pycom07g00990

Belongs to the UDP-glucose GDP-mannose dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0028861
Physical Location & Seq
Reverse (-)
827895 .. 829955
2061 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 675 bp
ATGGTTTATTTCCTTTTGAGAAACAGCCCGCTTGGTGGGCCGGCTGAAACAGGCTATGGACAACTAAAATGGGCCCCGAGCTATGTACGTACAGTTCATCTCTTAACCTTCTCTTCCTTGAGATATCGACTGTGCTTTTCTTCACTGTTAAAGATCTTCGGTGGCCTTTCGGCTGTCAATTCTTGTAAAGATTGCCGGAATTCTGAGTCTGGCGAGCTCCATCTCCTTGACAGGTTCTGGTTCAAGATTGAAGAAACTCTCAGCCCTGAAGATATGGATATGGACGGTGAGGACCCCATAGATGGTACTGCTGGGACAGAAGCTCCGATTAATAGTTTGGCACAGAATATTTGTTGGTCAGGGGCCAGCCTTTCTGGCGTTGTGAACATGCTTGTCATGGCGTCAAATCACCACGGTATAGGTTTTACAATTGTTGATACTGACAAATTAAAGATTGAAGCTTGGGATAATGTCTGGAATGGTGTGCCTGATGCTGCATTGCCTTTTGAGGAGCCTCATCTGAGAGACTTGTTGAATGATGCCAAACACTCTGATAACGTCCGTTTTGTTTGTGATGAAACGGCAAAAGATGAAGGAATCATAAAGAGGGCAAAGATGGTCTTCATTGCTGTTGAGGTACCCACAAAGCCGTGTGTTGGCACTAAAGGTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100
Pfam Domains
Protein Families
UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

225

Amino Acids

24.68

Weight (kDa)

5.12

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPG_MGDP_dh_N PF03721 116 - 216 4.1e-06 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028861)

Species Orthologous Gene IDs
malus_domestica MD07G1012300.v1.1
pyrus_communis pycom07g00990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 637
AccB1I GGYRCC 1 cut(s) 637
AciI CCGC 1 cut(s) 29
AcsI RAATTY 1 cut(s) 199
AcuI CTGAAG 1 cut(s) 288
AcyI GRCGYC 1 cut(s) 401
AfaI GTAC 4 cut(s) 87, 91, 307, 639
AfiI CCNNNNNNNGG 3 cut(s) 35, 302, 656
AgsI TTSAA 4 cut(s) 244, 251, 458, 535
AluBI AGCT 4 cut(s) 81, 217, 323, 461
AluI AGCT 4 cut(s) 81, 217, 323, 461
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 1 cut(s) 519
AlwNI CAGNNNCTG 1 cut(s) 237
Ama87I CYCGRG 1 cut(s) 76
AoxI GGCC 4 cut(s) 38, 72, 163, 363
ApaI GGGCCC 1 cut(s) 76
ApeKI GCWGC 1 cut(s) 494
ApoI RAATTY 1 cut(s) 199
AseI ATTAAT 1 cut(s) 330
Asp718I GGTACC 1 cut(s) 637
AspS9I GGNCC 5 cut(s) 38, 72, 73, 292, 363
AsuHPI GGTGA 2 cut(s) 299, 401
AvaI CYCGRG 1 cut(s) 76
AvaII GGWCC 1 cut(s) 292
BaeGI GKGCMC 1 cut(s) 76
BanI GGYRCC 1 cut(s) 637
BanII GRGCYC 2 cut(s) 76, 219
BbsI GAAGAC 1 cut(s) 613
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 481
BccI CCATC 3 cut(s) 228, 296, 610
BceAI ACGGC 2 cut(s) 597, 634
BcoDI GTCTC 1 cut(s) 519
BglI GCCNNNNNGGC 1 cut(s) 375
BglII AGATCT 1 cut(s) 153
BisI GCNGC 1 cut(s) 495
BlsI GCNGC 1 cut(s) 496
Bme18I GGWCC 1 cut(s) 292
BmeT110I CYCGRG 1 cut(s) 76
BmgT120I GGNCC 5 cut(s) 38, 72, 73, 292, 363
BmiI GGNNCC 6 cut(s) 74, 75, 294, 364, 513, 639
BmsI GCATC 2 cut(s) 481, 529
BpiI GAAGAC 1 cut(s) 613
BpuEI CTTGAG 1 cut(s) 139
BsaAI YACGTR 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 401
BsaJI CCNNGG 1 cut(s) 412
BsaXI ACNNNNNCTCC 2 cut(s) 307, 337
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 302, 656
Bse118I RCCGGY 1 cut(s) 40
Bse3DI GCAATG 2 cut(s) 497, 624
BseDI CCNNGG 1 cut(s) 412
BseLI CCNNNNNNNGG 3 cut(s) 35, 302, 656
BseMI GCAATG 2 cut(s) 497, 624
BseMII CTCAG 3 cut(s) 195, 274, 512
BseRI GAGGAG 1 cut(s) 524
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 1 cut(s) 481
BseYI CCCAGC 1 cut(s) 311
BshFI GGCC 4 cut(s) 40, 74, 165, 365
BshNI GGYRCC 1 cut(s) 637
BsiHKAI GWGCWC 1 cut(s) 219
BsiHKCI CYCGRG 1 cut(s) 76
BsiSI CCGG 2 cut(s) 41, 196
BslFI GGGAC 1 cut(s) 328
BslI CCNNNNNNNGG 3 cut(s) 35, 302, 656
BsmAI GTCTC 1 cut(s) 519
BsmFI GGGAC 1 cut(s) 328
BsnI GGCC 4 cut(s) 40, 74, 165, 365
BsoBI CYCGRG 1 cut(s) 76
Bsp120I GGGCCC 1 cut(s) 72
Bsp1286I GDGCHC 2 cut(s) 76, 219
Bsp143I GATC 1 cut(s) 153
BspACI CCGC 1 cut(s) 29
BspANI GGCC 4 cut(s) 40, 74, 165, 365
BspCNI CTCAG 3 cut(s) 196, 273, 513
BspLI GGNNCC 6 cut(s) 74, 75, 294, 364, 513, 639
BspT107I GGYRCC 1 cut(s) 637
BsrDI GCAATG 2 cut(s) 497, 624
BsrFI RCCGGY 1 cut(s) 40
BssAI RCCGGY 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 412
BssMI GATC 1 cut(s) 153
BssNI GRCGYC 1 cut(s) 401
Bst4CI ACNGT 5 cut(s) 94, 132, 147, 287, 416
Bst6I CTCTTC 1 cut(s) 118
BstACI GRCGYC 1 cut(s) 401
BstBAI YACGTR 1 cut(s) 89
BstC8I GCNNGC 4 cut(s) 29, 42, 215, 367
BstDEI CTNAG 3 cut(s) 204, 260, 521
BstDSI CCRYGG 1 cut(s) 412
BstKTI GATC 1 cut(s) 156
BstMAI GTCTC 1 cut(s) 519
BstMBI GATC 1 cut(s) 153
BstMWI GCNNNNNNNGC 2 cut(s) 37, 375
BstNSI RCATGY 1 cut(s) 391
BstSLI GKGCMC 1 cut(s) 76
BstSNI TACGTA 1 cut(s) 89
BstV1I GCAGC 1 cut(s) 481
BstV2I GAAGAC 1 cut(s) 613
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BsuRI GGCC 4 cut(s) 40, 74, 165, 365
BtgI CCRYGG 1 cut(s) 412
BtsIMutI CAGTG 1 cut(s) 143
Cac8I GCNNGC 4 cut(s) 29, 42, 215, 367
CaiI CAGNNNCTG 1 cut(s) 237
Cfr10I RCCGGY 1 cut(s) 40
Cfr13I GGNCC 5 cut(s) 38, 72, 73, 292, 363
CseI GACGC 1 cut(s) 390
Csp6I GTAC 4 cut(s) 86, 90, 306, 638
CviAII CATG 2 cut(s) 388, 397
CviQI GTAC 4 cut(s) 86, 90, 306, 638
DdeI CTNAG 3 cut(s) 204, 260, 521
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
Ecl136II GAGCTC 1 cut(s) 217
Eco105I TACGTA 1 cut(s) 89
Eco24I GRGCYC 2 cut(s) 76, 219
Eco32I GATATC 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 292
Eco53kI GAGCTC 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 76
EcoICRI GAGCTC 1 cut(s) 217
EcoO109I RGGNCCY 2 cut(s) 73, 292
EcoRI GAATTC 1 cut(s) 199
EcoRV GATATC 1 cut(s) 125
EcoT38I GRGCYC 2 cut(s) 76, 219
FaeI CATG 2 cut(s) 391, 400
FaiI YATR 9 cut(s) 57, 84, 275, 281, 299, 389, 398, 419, 602
FalI AAGNNNNNCTT 2 cut(s) 605, 637
FaqI GGGAC 1 cut(s) 328
FatI CATG 2 cut(s) 387, 396
FauI CCCGC 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 495
FriOI GRGCYC 2 cut(s) 76, 219
Fsp4HI GCNGC 1 cut(s) 495
GluI GCNGC 1 cut(s) 495
GsaI CCCAGC 1 cut(s) 315
HaeIII GGCC 4 cut(s) 40, 74, 165, 365
HapII CCGG 2 cut(s) 41, 196
HgaI GACGC 1 cut(s) 390
Hin1I GRCGYC 1 cut(s) 401
Hin1II CATG 2 cut(s) 391, 400
HindIII AAGCTT 1 cut(s) 459
HinfI GANTC 2 cut(s) 206, 597
HpaII CCGG 2 cut(s) 41, 196
HphI GGTGA 2 cut(s) 299, 401
Hpy166II GTNNAC 1 cut(s) 385
Hpy188I TCNGA 4 cut(s) 205, 327, 522, 553
Hpy188III TCNNGA 3 cut(s) 244, 475, 672
Hpy8I GTNNAC 1 cut(s) 385
HpyAV CCTTC 2 cut(s) 118, 587
HpyCH4III ACNGT 5 cut(s) 94, 132, 147, 287, 416
HpyCH4IV ACGT 2 cut(s) 88, 558
HpyCH4V TGCA 1 cut(s) 497
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 375
HpyF3I CTNAG 3 cut(s) 204, 260, 521
HpySE526I ACGT 2 cut(s) 88, 558
Hsp92I GRCGYC 1 cut(s) 401
Hsp92II CATG 2 cut(s) 391, 400
KpnI GGTACC 1 cut(s) 641
KroI GCCGGC 1 cut(s) 40
KroNI GCCGGC 1 cut(s) 42
Kzo9I GATC 1 cut(s) 153
LmnI GCTCC 3 cut(s) 222, 328, 511
Lsp1109I GCAGC 1 cut(s) 481
LweI GCATC 2 cut(s) 481, 529
MaeII ACGT 2 cut(s) 88, 558
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MboII GAAGA 6 cut(s) 105, 132, 148, 263, 281, 613
MfeI CAATTG 1 cut(s) 429
MflI RGATCY 1 cut(s) 153
MhlI GDGCHC 2 cut(s) 76, 219
MluCI AATT 4 cut(s) 178, 199, 429, 446
MlyI GAGTC 1 cut(s) 215
MnlI CCTC 5 cut(s) 283, 502, 525, 600, 628
MroNI GCCGGC 1 cut(s) 40
MseI TTAA 4 cut(s) 104, 149, 330, 449
MspI CCGG 2 cut(s) 41, 196
MunI CAATTG 1 cut(s) 429
MwoI GCNNNNNNNGC 2 cut(s) 37, 375
NaeI GCCGGC 1 cut(s) 42
NdeII GATC 1 cut(s) 153
NgoMIV GCCGGC 1 cut(s) 40
NlaIII CATG 2 cut(s) 391, 400
NlaIV GGNNCC 6 cut(s) 74, 75, 294, 364, 513, 639
NspI RCATGY 1 cut(s) 391
PdiI GCCGGC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 597
PkrI GCNGC 1 cut(s) 496
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
Ppu21I YACGTR 1 cut(s) 89
PpuMI RGGWCCY 1 cut(s) 292
PshBI ATTAAT 1 cut(s) 330
Psp124BI GAGCTC 1 cut(s) 219
Psp5II RGGWCCY 1 cut(s) 292
PspFI CCCAGC 1 cut(s) 311
PspN4I GGNNCC 6 cut(s) 74, 75, 294, 364, 513, 639
PspOMI GGGCCC 1 cut(s) 72
PspPI GGNCC 5 cut(s) 38, 72, 73, 292, 363
PspPPI RGGWCCY 1 cut(s) 292
PsrI GAACNNNNNNTAC 2 cut(s) 78, 110
PstNI CAGNNNCTG 1 cut(s) 237
PsuI RGATCY 1 cut(s) 153
RsaI GTAC 4 cut(s) 87, 91, 307, 639
RsaNI GTAC 4 cut(s) 86, 90, 306, 638
SacI GAGCTC 1 cut(s) 219
SaqAI TTAA 4 cut(s) 104, 149, 330, 449
SatI GCNGC 1 cut(s) 495
Sau3AI GATC 1 cut(s) 153
Sau96I GGNCC 5 cut(s) 38, 72, 73, 292, 363
SchI GAGTC 1 cut(s) 215
SduI GDGCHC 2 cut(s) 76, 219
SfaNI GCATC 2 cut(s) 481, 529
SinI GGWCC 1 cut(s) 292
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
SnaBI TACGTA 1 cut(s) 89
Sse9I AATT 4 cut(s) 178, 199, 429, 446
SsiI CCGC 1 cut(s) 29
SspI AATATT 1 cut(s) 349
SstI GAGCTC 1 cut(s) 219
TaaI ACNGT 5 cut(s) 94, 132, 147, 287, 416
TaiI ACGT 2 cut(s) 91, 561
TaqI TCGA 1 cut(s) 127
TasI AATT 4 cut(s) 178, 199, 429, 446
TfiI GAWTC 1 cut(s) 597
Tru1I TTAA 4 cut(s) 104, 149, 330, 449
Tru9I TTAA 4 cut(s) 104, 149, 330, 449
TscAI CASTG 1 cut(s) 150
TseI GCWGC 1 cut(s) 494
TspDTI ATGAA 4 cut(s) 86, 591, 606, 613
TspGWI ACGGA 1 cut(s) 551
TspRI CASTG 1 cut(s) 150
VpaK11BI GGWCC 1 cut(s) 292
VspI ATTAAT 1 cut(s) 330
XapI RAATTY 1 cut(s) 199
XceI RCATGY 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.