pycom07g03360

Plant family of unknown function (DUF810)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0029224
Physical Location & Seq
Forward (+)
2780827 .. 2784958
4132 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 999 bp
ATGAGGCCTACAGAATTGAGTGGTTTGTTTCGTGGGGTTGACAATGCATTTCAGGTGTTTGCTAATCGTGTCATTGACAAGTTGGCTACCAAGGAGGATTTAATTCCACCAGTGCCCATTCTTACAAGATACAGGAAGGAAGTTGGAATAAAGGCTTTTGTAAAGAAGGAACTATTTGATCCTAGGCTGCCTGATGAGAGAAGGTCTACTGAAATTAATTTTAGAACGACTCCAACCCTTTGTGTTCAGTTAAACACACTTCATTATGCAATCAGTCAGCTGAATAAGTTGGAAGATAGCATTTGGGAGAGATGGACGAAGAAGCAGCCCCGCCAAAAACTTATCAAGAAATCCATGGACGAGAAGTCAAAAAGTTTCACCCAAAAGGACACGTTTGATGGCAGTAGAAAAGATATAAATGCTGCTATAGATCGATCGGTATTTGCGAGAACTAAGATTATCTTCTGGGATTTGAGGGAACCAATTATTGACAATTTATATAAACCAAGTGTTTCTCTTTCAAGATTTGAAGCAGTGTACGAACCACTTGATACGGAACTTAGTCAACTATGTGCTATAATTGTGGAACCACTCAGGGATCGCATTGTGACAAGTCTCCTTCAAGCAACACTGGATGGTTTACTCCGTGTTCTATTAGATGGTGGCCCATCACGAATTTTCTCTGTGGGAGATGCTAAGCTATTAGAAGAAGATTTGGAGGTCCTCAAGGAGTTTTTCATCTCTGGAGGAGATGGGCTTCCGCGAGGAGTTGTTGAGAATCAGGTAGCACGTGTTCGGGATGTAGTAAAGTTACACAGCTACGAGACTCGAGAACTGATCGACGACTTGAAGTCTTCTGGTGGCCTGGAAATGCAGGGTGGTAGAAGCAAGCTAGGGGCTGATTCTAAGACCCTTTTGAGAGTATTATGTCACAGAGGTGATTCAGAGGCCTCTCAATTCCTCAAGAAACAGTACAAGATACCCAAGTCCTCGGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009987 GO:0010118 GO:0016020 GO:0030054 GO:0044424 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF810

Protein Analysis

333

Amino Acids

37.78

Weight (kDa)

9.15

Isoelectric Point (pI)

34.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_PATROL1 PF25761 1 - 330 1e-95 PATROL1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029224)

Species Orthologous Gene IDs
pyrus_communis pycom02g23880 pycom07g03360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 206
AccII CGCG 1 cut(s) 763
AciI CCGC 2 cut(s) 331, 761
AclWI GGATC 2 cut(s) 173, 606
AcsI RAATTY 1 cut(s) 675
AcvI CACGTG 1 cut(s) 791
AfaI GTAC 2 cut(s) 539, 974
AflIII ACRYGT 2 cut(s) 390, 790
AgsI TTSAA 4 cut(s) 522, 530, 623, 850
AhdI GACNNNNNGTC 2 cut(s) 364, 850
AjnI CCWGG 1 cut(s) 864
AleI CACNNNNGTG 1 cut(s) 936
AluBI AGCT 4 cut(s) 280, 700, 819, 892
AluI AGCT 4 cut(s) 280, 700, 819, 892
Alw26I GTCTC 2 cut(s) 620, 818
AlwI GGATC 2 cut(s) 173, 606
Ama87I CYCGRG 1 cut(s) 828
AoxI GGCC 4 cut(s) 5, 664, 862, 948
ApeKI GCWGC 3 cut(s) 187, 325, 422
ApoI RAATTY 1 cut(s) 675
AseI ATTAAT 1 cut(s) 216
AspA2I CCTAGG 1 cut(s) 182
AspS9I GGNCC 2 cut(s) 665, 721
AsuHPI GGTGA 2 cut(s) 370, 950
AvaI CYCGRG 1 cut(s) 828
AvaII GGWCC 1 cut(s) 721
AvrII CCTAGG 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 117
BaeI ACNNNNGTAYC 1 cut(s) 971
BbrPI CACGTG 1 cut(s) 791
BbsI GAAGAC 1 cut(s) 846
BbvI GCAGC 3 cut(s) 174, 337, 409
BccI CCATC 6 cut(s) 306, 392, 629, 653, 676, 746
BciT130I CCWGG 1 cut(s) 866
BcoDI GTCTC 2 cut(s) 620, 818
BfaI CTAG 2 cut(s) 183, 893
BfmI CTRYAG 2 cut(s) 9, 426
BisI GCNGC 3 cut(s) 188, 326, 423
BlnI CCTAGG 1 cut(s) 182
BlpI GCTNAGC 1 cut(s) 696
BlsI GCNGC 3 cut(s) 189, 327, 424
Bme1390I CCNGG 1 cut(s) 866
Bme18I GGWCC 1 cut(s) 721
BmeRI GACNNNNNGTC 2 cut(s) 364, 850
BmeT110I CYCGRG 1 cut(s) 828
BmgT120I GGNCC 2 cut(s) 665, 721
BmiI GGNNCC 2 cut(s) 480, 588
BmrFI CCNGG 1 cut(s) 866
BmsI GCATC 1 cut(s) 682
BpiI GAAGAC 1 cut(s) 846
BpmI CTGGAG 1 cut(s) 765
Bpu1102I GCTNAGC 1 cut(s) 696
BpuEI CTTGAG 2 cut(s) 710, 947
Bsa29I ATCGAT 1 cut(s) 433
BsaAI YACGTR 1 cut(s) 791
BsaJI CCNNGG 4 cut(s) 90, 182, 354, 990
Bse1I ACTGG 2 cut(s) 110, 636
BseBI CCWGG 1 cut(s) 866
BseCI ATCGAT 1 cut(s) 433
BseDI CCNNGG 4 cut(s) 90, 182, 354, 990
BseGI GGATG 2 cut(s) 640, 805
BseMII CTCAG 1 cut(s) 607
BseNI ACTGG 2 cut(s) 110, 636
BseRI GAGGAG 2 cut(s) 762, 780
BseSI GKGCMC 1 cut(s) 117
BseXI GCAGC 3 cut(s) 174, 337, 409
Bsh1236I CGCG 1 cut(s) 763
Bsh1285I CGRYCG 1 cut(s) 437
BshFI GGCC 4 cut(s) 7, 666, 864, 950
BshVI ATCGAT 1 cut(s) 433
BsiEI CGRYCG 1 cut(s) 437
BsiHKCI CYCGRG 1 cut(s) 828
BsmAI GTCTC 2 cut(s) 620, 818
BsnI GGCC 4 cut(s) 7, 666, 864, 950
BsoBI CYCGRG 1 cut(s) 828
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 5 cut(s) 178, 430, 434, 598, 837
Bsp1720I GCTNAGC 1 cut(s) 696
Bsp19I CCATGG 1 cut(s) 354
BspACI CCGC 2 cut(s) 331, 761
BspANI GGCC 4 cut(s) 7, 666, 864, 950
BspCNI CTCAG 1 cut(s) 606
BspDI ATCGAT 1 cut(s) 433
BspFNI CGCG 1 cut(s) 763
BspLI GGNNCC 2 cut(s) 480, 588
BspPI GGATC 2 cut(s) 173, 606
BsrI ACTGG 2 cut(s) 110, 636
BssECI CCNNGG 4 cut(s) 90, 182, 354, 990
BssMI GATC 5 cut(s) 178, 430, 434, 598, 837
BssT1I CCWWGG 3 cut(s) 90, 182, 354
Bst2UI CCWGG 1 cut(s) 866
Bst4CI ACNGT 1 cut(s) 972
BstBAI YACGTR 1 cut(s) 791
BstC8I GCNNGC 1 cut(s) 890
BstDEI CTNAG 5 cut(s) 453, 560, 593, 696, 906
BstDSI CCRYGG 1 cut(s) 354
BstF5I GGATG 2 cut(s) 640, 805
BstFNI CGCG 1 cut(s) 763
BstKTI GATC 5 cut(s) 181, 433, 437, 601, 840
BstMAI GTCTC 2 cut(s) 620, 818
BstMBI GATC 5 cut(s) 178, 430, 434, 598, 837
BstMCI CGRYCG 1 cut(s) 437
BstNI CCWGG 1 cut(s) 866
BstSCI CCNGG 1 cut(s) 864
BstSFI CTRYAG 2 cut(s) 9, 426
BstSLI GKGCMC 1 cut(s) 117
BstUI CGCG 1 cut(s) 763
BstV1I GCAGC 3 cut(s) 174, 337, 409
BstV2I GAAGAC 1 cut(s) 846
Bsu15I ATCGAT 1 cut(s) 433
BsuRI GGCC 4 cut(s) 7, 666, 864, 950
BsuTUI ATCGAT 1 cut(s) 433
BtgI CCRYGG 1 cut(s) 354
BtsCI GGATG 2 cut(s) 640, 805
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 3 cut(s) 117, 540, 629
Cac8I GCNNGC 1 cut(s) 890
Cfr13I GGNCC 2 cut(s) 665, 721
ClaI ATCGAT 1 cut(s) 433
Csp6I GTAC 2 cut(s) 538, 973
CviAII CATG 1 cut(s) 355
CviQI GTAC 2 cut(s) 538, 973
DdeI CTNAG 5 cut(s) 453, 560, 593, 696, 906
DpnI GATC 5 cut(s) 180, 432, 436, 600, 839
DpnII GATC 5 cut(s) 178, 430, 434, 598, 837
DriI GACNNNNNGTC 2 cut(s) 364, 850
Eam1105I GACNNNNNGTC 2 cut(s) 364, 850
Eco130I CCWWGG 3 cut(s) 90, 182, 354
Eco147I AGGCCT 2 cut(s) 7, 950
Eco47I GGWCC 1 cut(s) 721
Eco72I CACGTG 1 cut(s) 791
Eco88I CYCGRG 1 cut(s) 828
EcoO109I RGGNCCY 1 cut(s) 721
EcoRII CCWGG 1 cut(s) 864
EcoT14I CCWWGG 3 cut(s) 90, 182, 354
EcoT22I ATGCAT 1 cut(s) 49
ErhI CCWWGG 3 cut(s) 90, 182, 354
FaeI CATG 1 cut(s) 358
FaiI YATR 9 cut(s) 267, 356, 416, 428, 499, 501, 571, 578, 928
FalI AAGNNNNNCTT 2 cut(s) 446, 478
FatI CATG 1 cut(s) 354
FauI CCCGC 1 cut(s) 338
FblI GTMKAC 1 cut(s) 206
Fnu4HI GCNGC 3 cut(s) 188, 326, 423
FokI GGATG 2 cut(s) 647, 812
Fsp4HI GCNGC 3 cut(s) 188, 326, 423
FspBI CTAG 2 cut(s) 183, 893
GluI GCNGC 3 cut(s) 188, 326, 423
GsuI CTGGAG 1 cut(s) 765
HaeIII GGCC 4 cut(s) 7, 666, 864, 950
Hin1II CATG 1 cut(s) 358
HincII GTYRAC 2 cut(s) 40, 566
HindII GTYRAC 2 cut(s) 40, 566
HinfI GANTC 5 cut(s) 229, 778, 826, 902, 941
HphI GGTGA 2 cut(s) 370, 950
Hpy166II GTNNAC 5 cut(s) 40, 207, 538, 566, 641
Hpy188I TCNGA 1 cut(s) 946
Hpy188III TCNNGA 7 cut(s) 346, 522, 672, 744, 797, 830, 964
Hpy8I GTNNAC 5 cut(s) 40, 207, 538, 566, 641
Hpy99I CGWCG 1 cut(s) 845
HpyAV CCTTC 4 cut(s) 130, 160, 195, 629
HpyCH4III ACNGT 1 cut(s) 972
HpyCH4IV ACGT 2 cut(s) 392, 790
HpyCH4V TGCA 3 cut(s) 47, 269, 874
HpyF3I CTNAG 5 cut(s) 453, 560, 593, 696, 906
HpySE526I ACGT 2 cut(s) 392, 790
Hsp92II CATG 1 cut(s) 358
Kzo9I GATC 5 cut(s) 178, 430, 434, 598, 837
Lsp1109I GCAGC 3 cut(s) 174, 337, 409
LweI GCATC 1 cut(s) 682
MaeI CTAG 2 cut(s) 183, 893
MaeII ACGT 2 cut(s) 392, 790
MaeIII GTNAC 3 cut(s) 607, 810, 929
MalI GATC 5 cut(s) 180, 432, 436, 600, 839
MboI GATC 5 cut(s) 178, 430, 434, 598, 837
MboII GAAGA 6 cut(s) 305, 331, 454, 719, 722, 846
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 9 cut(s) 14, 102, 213, 217, 483, 493, 579, 675, 956
MlyI GAGTC 2 cut(s) 223, 820
MmeI TCCRAC 3 cut(s) 124, 257, 270
Mph1103I ATGCAT 1 cut(s) 49
MseI TTAA 3 cut(s) 101, 216, 251
MslI CAYNNNNRTG 1 cut(s) 936
MspA1I CMGCKG 1 cut(s) 280
MspR9I CCNGG 1 cut(s) 866
MvaI CCWGG 1 cut(s) 866
MvnI CGCG 1 cut(s) 763
NcoI CCATGG 1 cut(s) 354
NdeII GATC 5 cut(s) 178, 430, 434, 598, 837
NlaIII CATG 1 cut(s) 358
NlaIV GGNNCC 2 cut(s) 480, 588
NmeAIII GCCGAG 1 cut(s) 971
NmuCI GTSAC 2 cut(s) 607, 929
NsiI ATGCAT 1 cut(s) 49
OliI CACNNNNGTG 1 cut(s) 936
PaeR7I CTCGAG 1 cut(s) 828
PceI AGGCCT 2 cut(s) 7, 950
PcsI WCGNNNNNNNCGW 1 cut(s) 443
PfeI GAWTC 3 cut(s) 778, 902, 941
PkrI GCNGC 3 cut(s) 189, 327, 424
Ple19I CGATCG 1 cut(s) 437
PleI GAGTC 2 cut(s) 223, 820
PmaCI CACGTG 1 cut(s) 791
PmlI CACGTG 1 cut(s) 791
PpsI GAGTC 2 cut(s) 223, 820
Ppu21I YACGTR 1 cut(s) 791
PpuMI RGGWCCY 1 cut(s) 721
PshBI ATTAAT 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 721
Psp6I CCWGG 1 cut(s) 864
PspCI CACGTG 1 cut(s) 791
PspGI CCWGG 1 cut(s) 864
PspN4I GGNNCC 2 cut(s) 480, 588
PspPI GGNCC 2 cut(s) 665, 721
PspPPI RGGWCCY 1 cut(s) 721
PsrI GAACNNNNNNTAC 2 cut(s) 777, 809
PvuI CGATCG 1 cut(s) 437
PvuII CAGCTG 1 cut(s) 280
RsaI GTAC 2 cut(s) 539, 974
RsaNI GTAC 2 cut(s) 538, 973
RseI CAYNNNNRTG 1 cut(s) 936
SaqAI TTAA 3 cut(s) 101, 216, 251
SatI GCNGC 3 cut(s) 188, 326, 423
Sau3AI GATC 5 cut(s) 178, 430, 434, 598, 837
Sau96I GGNCC 2 cut(s) 665, 721
SchI GAGTC 2 cut(s) 223, 820
ScrFI CCNGG 1 cut(s) 866
SduI GDGCHC 1 cut(s) 117
SfaNI GCATC 1 cut(s) 682
SfcI CTRYAG 2 cut(s) 9, 426
Sfr274I CTCGAG 1 cut(s) 828
SinI GGWCC 1 cut(s) 721
SlaI CTCGAG 1 cut(s) 828
SmiMI CAYNNNNRTG 1 cut(s) 936
SmlI CTYRAG 3 cut(s) 725, 828, 962
SmoI CTYRAG 3 cut(s) 725, 828, 962
Sse9I AATT 9 cut(s) 14, 102, 213, 217, 483, 493, 579, 675, 956
SseBI AGGCCT 2 cut(s) 7, 950
SsiI CCGC 2 cut(s) 331, 761
SspMI CTAG 2 cut(s) 183, 893
StuI AGGCCT 2 cut(s) 7, 950
StyD4I CCNGG 1 cut(s) 864
StyI CCWWGG 3 cut(s) 90, 182, 354
TaaI ACNGT 1 cut(s) 972
TaiI ACGT 2 cut(s) 395, 793
TaqI TCGA 3 cut(s) 433, 829, 840
TasI AATT 9 cut(s) 14, 102, 213, 217, 483, 493, 579, 675, 956
TatI WGTACW 1 cut(s) 972
TfiI GAWTC 3 cut(s) 778, 902, 941
Tru1I TTAA 3 cut(s) 101, 216, 251
Tru9I TTAA 3 cut(s) 101, 216, 251
TscAI CASTG 3 cut(s) 117, 540, 636
TseFI GTSAC 2 cut(s) 607, 929
TseI GCWGC 3 cut(s) 187, 325, 422
Tsp45I GTSAC 2 cut(s) 607, 929
TspDTI ATGAA 2 cut(s) 251, 727
TspGWI ACGGA 2 cut(s) 569, 635
TspRI CASTG 3 cut(s) 117, 540, 636
VpaK11BI GGWCC 1 cut(s) 721
VspI ATTAAT 1 cut(s) 216
XapI RAATTY 1 cut(s) 675
XhoI CTCGAG 1 cut(s) 828
XmaJI CCTAGG 1 cut(s) 182
XmiI GTMKAC 1 cut(s) 206
XspI CTAG 2 cut(s) 183, 893
Zsp2I ATGCAT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.