Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0029313

Physical Location & Seq

Genomic Coordinates Forward (+)

3756152 .. 3756463

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGGTCAAGATTTCTGTGCCCAGACGCCTGTTCAAGCTAATTTGTTGGAACATGTCAATACACTTGATAATTCCTCGTGCCCGCATGGTGTTCTGAGTTCAAATTTTATTTTCTCCTTACCAACACAAAAGCCTATTGCCGAAGAGGCAATGGTTTCCGGGTATACGTGTTTTCTTTCATTTTTATTTGGTTTTTTGTACTGTTATTTCATCTTATCTATTCACTTCTCTCTTACCTCCTGTCTTGAACATGATCATGCGACAGGTCCTTGTGTTTGTGTTAGTTACACGATTATTGTTTGTTTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009409 GO:0009506 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032392 GO:0032508 GO:0032870 GO:0033554 GO:0033993 GO:0034641 GO:0042221 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0055044 GO:0070035 GO:0070417 GO:0070887 GO:0071103 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:0097306 GO:0140097 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03018 ko03440 ko03460 map03018 map03440 map03460

Pfam Domains

Protein Families

DEAD HRDC Helicase_C RQC RecQ_Zn_bind

Protein Analysis

104

Amino Acids

11.4

Weight (kDa)

4.92

Isoelectric Point (pI)

21.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029313)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g04360 pycom07g04370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	164
AciI	CCGC	1 cut(s)	83
AcsI	RAATTY	1 cut(s)	103
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	1 cut(s)	200
AflIII	ACRYGT	2 cut(s)	52, 167
AgsI	TTSAA	4 cut(s)	35, 102, 248, 307
AluBI	AGCT	1 cut(s)	38
AluI	AGCT	1 cut(s)	38
ApoI	RAATTY	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	266
AsuC2I	CCSGG	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	266
BaeGI	GKGCMC	2 cut(s)	22, 83
BauI	CACGAG	1 cut(s)	76
BclI	TGATCA	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	160
BglI	GCCNNNNNGGC	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	160
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmrFI	CCNGG	1 cut(s)	160
BpuMI	CCSGG	1 cut(s)	160
BsaAI	YACGTR	1 cut(s)	168
BsaHI	GRCGYC	1 cut(s)	26
Bse3DI	GCAATG	1 cut(s)	156
BseMI	GCAATG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	86
BseSI	GKGCMC	2 cut(s)	22, 83
BsiSI	CCGG	1 cut(s)	159
Bsp1286I	GDGCHC	2 cut(s)	22, 83
Bsp143I	GATC	1 cut(s)	253
BspACI	CCGC	1 cut(s)	83
BspCNI	CTCAG	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	156
BssMI	GATC	1 cut(s)	253
BssNAI	GTATAC	1 cut(s)	165
BssNI	GRCGYC	1 cut(s)	26
BssSI	CACGAG	1 cut(s)	76
Bst1107I	GTATAC	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	76
Bst4CI	ACNGT	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	138
BstACI	GRCGYC	1 cut(s)	26
BstBAI	YACGTR	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	83
BstDEI	CTNAG	1 cut(s)	95
BstKTI	GATC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNSI	RCATGY	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	158
BstSLI	GKGCMC	2 cut(s)	22, 83
BstZ17I	GTATAC	1 cut(s)	165
Cac8I	GCNNGC	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	266
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	4 cut(s)	53, 86, 251, 257
CviJI	RGCY	2 cut(s)	38, 133
CviKI_1	RGCY	2 cut(s)	38, 133
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	266
FaeI	CATG	4 cut(s)	56, 89, 254, 260
FaiI	YATR	5 cut(s)	54, 87, 165, 252, 258
FatI	CATG	4 cut(s)	52, 85, 250, 256
FauI	CCCGC	1 cut(s)	90
FbaI	TGATCA	1 cut(s)	253
FblI	GTMKAC	1 cut(s)	164
HapII	CCGG	1 cut(s)	159
HgaI	GACGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	4 cut(s)	56, 89, 254, 260
HpaII	CCGG	1 cut(s)	159
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	1 cut(s)	96
Hpy188III	TCNNGA	2 cut(s)	8, 245
Hpy8I	GTNNAC	1 cut(s)	165
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	1 cut(s)	167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	1 cut(s)	95
HpySE526I	ACGT	1 cut(s)	167
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	4 cut(s)	56, 89, 254, 260
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	253
LpnPI	CCDG	5 cut(s)	35, 42, 172, 249, 253
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	1 cut(s)	155
MhlI	GDGCHC	2 cut(s)	22, 83
MluCI	AATT	3 cut(s)	40, 70, 103
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	3 cut(s)	85, 139, 247
MslI	CAYNNNNRTG	1 cut(s)	255
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	160
MwoI	GCNNNNNNNGC	1 cut(s)	146
NciI	CCSGG	1 cut(s)	160
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	4 cut(s)	56, 89, 254, 260
NspI	RCATGY	1 cut(s)	56
PciI	ACATGT	1 cut(s)	52
Ppu21I	YACGTR	1 cut(s)	168
PpuMI	RGGWCCY	1 cut(s)	266
PscI	ACATGT	1 cut(s)	52
Psp5II	RGGWCCY	1 cut(s)	266
PspPI	GGNCC	1 cut(s)	266
PspPPI	RGGWCCY	1 cut(s)	266
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
RseI	CAYNNNNRTG	1 cut(s)	255
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	160
SduI	GDGCHC	2 cut(s)	22, 83
SetI	ASST	4 cut(s)	40, 170, 239, 268
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	255
Sse9I	AATT	3 cut(s)	40, 70, 103
SsiI	CCGC	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	158
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	1 cut(s)	170
TasI	AATT	3 cut(s)	40, 70, 103
TatI	WGTACW	1 cut(s)	198
TspDTI	ATGAA	2 cut(s)	168, 199
VpaK11BI	GGWCC	1 cut(s)	266
XapI	RAATTY	1 cut(s)	103
XceI	RCATGY	1 cut(s)	56
XmiI	GTMKAC	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.