pycom07g05730

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0029316
Physical Location & Seq
Reverse (-)
4998909 .. 4999758
850 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g05730.2

Sequence Viewer

Length: 615 bp
ATGAGTCTTATATGCCTACAATATATCCCGTTTCGTCGAATTTCGACGGCGGGTGTGAACACCCATGTGGGTATGGTGAGAAAAGAGAGGGTGAGAGTTGGAATTCTGGGTATTTTGTGGGTAACCCTGTTGCTGCCGTGGCTCAATCTTGTCATGAAAGCAATGTTTTTTTATGCCCAATGCAAACCCAGATCAATGGTTGATAATCAGCCTTTAGGATTGCCGGTTCGGAGTTTGAAACCGAGGGTGAAAAACCGGGACAGTTTTGAGTTTGTTGCTAGGAGTGAATTCGGTTTAGGTTCTAAGGGCTATTTTAATAGCTCTGAATTTGGGTGCTATAAATTTAGAACAGAAGGTCTTCCTCCTTCAGGATTTGCATCATCACCACCAAAACCGTTGAATGAAAAAGCCTCAGTGAGTGCATTGCATTCGCGGGGGTATAGCATTGGTTCTTTCCATGAGGAGAACATGATGAGAAGAAAGAGTCATCCTCTTCCTGCTCCGTCTACATCACTAACACCCAAATATTATATGTTACATAAGGACTTGTTCGTTTCAAGACTAGCACACTTGCATGACCACCCAACCTATCTTGAAGCATACAGGAGAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

205

Amino Acids

23.31

Weight (kDa)

10.12

Isoelectric Point (pI)

52.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029316)

Species Orthologous Gene IDs
pyrus_communis pycom07g05730 pycom07g05760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 506
AccII CGCG 1 cut(s) 433
AciI CCGC 2 cut(s) 50, 433
AcsI RAATTY 6 cut(s) 39, 102, 287, 326, 341, 609
AcuI CTGAAG 1 cut(s) 351
AfiI CCNNNNNNNGG 1 cut(s) 368
AgsI TTSAA 4 cut(s) 238, 400, 558, 596
AleI CACNNNNGTG 1 cut(s) 65
AloI GAACNNNNNNTCC 2 cut(s) 210, 242
AluBI AGCT 1 cut(s) 321
AluI AGCT 1 cut(s) 321
ApeKI GCWGC 1 cut(s) 133
ApoI RAATTY 6 cut(s) 39, 102, 287, 326, 341, 609
Asp700I GAANNNNTTC 1 cut(s) 357
AsuC2I CCSGG 1 cut(s) 257
AsuHPI GGTGA 4 cut(s) 88, 103, 259, 375
BbsI GAAGAC 1 cut(s) 350
BbvI GCAGC 1 cut(s) 120
BceAI ACGGC 2 cut(s) 63, 121
BcgI CGANNNNNNTGC 2 cut(s) 411, 445
BcnI CCSGG 1 cut(s) 257
BfaI CTAG 2 cut(s) 279, 563
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
Bme1390I CCNGG 1 cut(s) 257
BmrFI CCNGG 1 cut(s) 257
BmsI GCATC 1 cut(s) 386
BpiI GAAGAC 1 cut(s) 350
BplI GAGNNNNNCTC 2 cut(s) 475, 507
BpuMI CCSGG 1 cut(s) 257
BsaBI GATNNNNATC 1 cut(s) 376
BsaJI CCNNGG 2 cut(s) 137, 242
Bsc4I CCNNNNNNNGG 1 cut(s) 368
Bse118I RCCGGY 1 cut(s) 223
Bse3DI GCAATG 2 cut(s) 168, 422
Bse8I GATNNNNATC 1 cut(s) 376
BseDI CCNNGG 2 cut(s) 137, 242
BseGI GGATG 1 cut(s) 487
BseJI GATNNNNATC 1 cut(s) 376
BseLI CCNNNNNNNGG 1 cut(s) 368
BseMI GCAATG 2 cut(s) 168, 422
BseMII CTCAG 1 cut(s) 426
BseRI GAGGAG 1 cut(s) 476
BseXI GCAGC 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 433
BsiSI CCGG 2 cut(s) 224, 256
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 1 cut(s) 368
BsmFI GGGAC 1 cut(s) 272
BsmI GAATGC 1 cut(s) 427
Bsp143I GATC 1 cut(s) 191
BspACI CCGC 2 cut(s) 50, 433
BspCNI CTCAG 1 cut(s) 425
BspFNI CGCG 1 cut(s) 433
BspHI TCATGA 1 cut(s) 153
BsrDI GCAATG 2 cut(s) 168, 422
BsrFI RCCGGY 1 cut(s) 223
BssAI RCCGGY 1 cut(s) 223
BssECI CCNNGG 2 cut(s) 137, 242
BssMI GATC 1 cut(s) 191
Bst4CI ACNGT 2 cut(s) 263, 396
Bst6I CTCTTC 1 cut(s) 498
BstDEI CTNAG 2 cut(s) 303, 412
BstDSI CCRYGG 1 cut(s) 137
BstEII GGTNACC 1 cut(s) 121
BstENI CCTNNNNNAGG 1 cut(s) 366
BstF5I GGATG 1 cut(s) 487
BstFNI CGCG 1 cut(s) 433
BstKTI GATC 1 cut(s) 194
BstMBI GATC 1 cut(s) 191
BstMWI GCNNNNNNNGC 1 cut(s) 139
BstPI GGTNACC 1 cut(s) 121
BstSCI CCNGG 1 cut(s) 255
BstUI CGCG 1 cut(s) 433
BstV1I GCAGC 1 cut(s) 120
BstV2I GAAGAC 1 cut(s) 350
BstXI CCANNNNNNTGG 1 cut(s) 196
BtgI CCRYGG 1 cut(s) 137
BtsCI GGATG 1 cut(s) 487
BtsIMutI CAGTG 1 cut(s) 420
CciI TCATGA 1 cut(s) 153
Cfr10I RCCGGY 1 cut(s) 223
CviAII CATG 5 cut(s) 65, 154, 458, 469, 575
CviJI RGCY 5 cut(s) 142, 211, 309, 321, 410
CviKI_1 RGCY 5 cut(s) 142, 211, 309, 321, 410
DdeI CTNAG 2 cut(s) 303, 412
DpnI GATC 1 cut(s) 193
DpnII GATC 1 cut(s) 191
Eam1104I CTCTTC 1 cut(s) 498
EarI CTCTTC 1 cut(s) 498
Eco57I CTGAAG 1 cut(s) 351
Eco91I GGTNACC 1 cut(s) 121
EcoNI CCTNNNNNAGG 1 cut(s) 366
EcoO65I GGTNACC 1 cut(s) 121
EcoRI GAATTC 2 cut(s) 102, 287
FaeI CATG 5 cut(s) 68, 157, 461, 472, 578
FaqI GGGAC 1 cut(s) 272
FatI CATG 5 cut(s) 64, 153, 457, 468, 574
FauI CCCGC 2 cut(s) 43, 426
FblI GTMKAC 1 cut(s) 506
Fnu4HI GCNGC 1 cut(s) 134
FokI GGATG 1 cut(s) 474
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 2 cut(s) 279, 563
GluI GCNGC 1 cut(s) 134
HapII CCGG 2 cut(s) 224, 256
Hin1II CATG 5 cut(s) 68, 157, 461, 472, 578
HinfI GANTC 2 cut(s) 4, 484
HpaII CCGG 2 cut(s) 224, 256
HphI GGTGA 4 cut(s) 88, 103, 259, 375
Hpy166II GTNNAC 2 cut(s) 58, 507
Hpy188I TCNGA 2 cut(s) 231, 325
Hpy188III TCNNGA 4 cut(s) 154, 369, 558, 593
Hpy8I GTNNAC 2 cut(s) 58, 507
Hpy99I CGWCG 2 cut(s) 39, 49
HpyAV CCTTC 2 cut(s) 347, 375
HpyCH4III ACNGT 2 cut(s) 263, 396
HpyCH4V TGCA 5 cut(s) 183, 377, 422, 427, 574
HpyF10VI GCNNNNNNNGC 1 cut(s) 139
HpyF3I CTNAG 2 cut(s) 303, 412
Hsp92II CATG 5 cut(s) 68, 157, 461, 472, 578
Kzo9I GATC 1 cut(s) 191
LmnI GCTCC 1 cut(s) 505
LpnPI CCDG 8 cut(s) 92, 140, 202, 237, 269, 354, 510, 589
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 1 cut(s) 386
MaeI CTAG 2 cut(s) 279, 563
MaeIII GTNAC 2 cut(s) 121, 534
MalI GATC 1 cut(s) 193
MboI GATC 1 cut(s) 191
MboII GAAGA 3 cut(s) 350, 485, 489
MluCI AATT 6 cut(s) 39, 102, 287, 326, 341, 609
MlyI GAGTC 2 cut(s) 13, 493
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 6 cut(s) 81, 237, 372, 421, 454, 501
MroXI GAANNNNTTC 1 cut(s) 357
MseI TTAA 2 cut(s) 315, 613
MslI CAYNNNNRTG 2 cut(s) 65, 573
MspI CCGG 2 cut(s) 224, 256
MspR9I CCNGG 1 cut(s) 257
Mva1269I GAATGC 1 cut(s) 427
MvnI CGCG 1 cut(s) 433
MwoI GCNNNNNNNGC 1 cut(s) 139
NciI CCSGG 1 cut(s) 257
NdeII GATC 1 cut(s) 191
NlaIII CATG 5 cut(s) 68, 157, 461, 472, 578
OliI CACNNNNGTG 1 cut(s) 65
PagI TCATGA 1 cut(s) 153
PctI GAATGC 1 cut(s) 427
PdmI GAANNNNTTC 1 cut(s) 357
PkrI GCNGC 1 cut(s) 135
PleI GAGTC 2 cut(s) 12, 492
PpsI GAGTC 2 cut(s) 12, 492
PspEI GGTNACC 1 cut(s) 121
RseI CAYNNNNRTG 2 cut(s) 65, 573
SaqAI TTAA 2 cut(s) 315, 613
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 1 cut(s) 191
SchI GAGTC 2 cut(s) 13, 493
ScrFI CCNGG 1 cut(s) 257
SetI ASST 4 cut(s) 301, 323, 358, 590
SfaNI GCATC 1 cut(s) 386
SmiMI CAYNNNNRTG 2 cut(s) 65, 573
Sse9I AATT 6 cut(s) 39, 102, 287, 326, 341, 609
SsiI CCGC 2 cut(s) 50, 433
SspI AATATT 1 cut(s) 527
SspMI CTAG 2 cut(s) 279, 563
StyD4I CCNGG 1 cut(s) 255
TaaI ACNGT 2 cut(s) 263, 396
TaqI TCGA 2 cut(s) 37, 44
TasI AATT 6 cut(s) 39, 102, 287, 326, 341, 609
Tru1I TTAA 2 cut(s) 315, 613
Tru9I TTAA 2 cut(s) 315, 613
TscAI CASTG 1 cut(s) 420
TseI GCWGC 1 cut(s) 133
TspDTI ATGAA 2 cut(s) 170, 417
TspGWI ACGGA 1 cut(s) 492
TspRI CASTG 1 cut(s) 420
XagI CCTNNNNNAGG 1 cut(s) 366
XapI RAATTY 6 cut(s) 39, 102, 287, 326, 341, 609
XmiI GTMKAC 1 cut(s) 506
XmnI GAANNNNTTC 1 cut(s) 357
XspI CTAG 2 cut(s) 279, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.