pycom07g05760

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0029316
Physical Location & Seq
Reverse (-)
5029903 .. 5030682
780 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 525 bp
ATGGTGAGAAAAGAGAGGGTGAGAGTTGAAATTCTGGGTATTTTGTGGGTAACCCTGTTGCTGCCGTGGCTCAATCTTGTCATGAAAGCAATGTTTTTTTATGCCCAATGCAAACCCAGATCAATGGTTGATAATCAGCCTTTAGGATTGCCGGTTCGGAGTTTGAAACCGAGGGTGAAAAACCGGGACAGTTTTGAGTTTGTTGCTAGGAGTGAATTCGGTTTAGGTTCTAAGGGCTATTTTAATAGCTCTGAATTTGGGTGGTCTTCTTCTCCTTCAGGATTTGCATCATCACCACCAAAACCGTTGAATGAAAAAGCCTCAGTGAGTGCATTGCATTCGCGGGGGTATAGCATTGGTTCTTTCCATGAGGAGAACATGATGAGAAGAAAGAGTCATCCTCTTCCTGCTCCGTCTACATCACTAACACCCAAATATTATATGTTACATAAGGACTTGTTCGTTTCAAGACTAGCACACTTGCATGACCACCCAACCTATCTTGAAGCATACAGGAGAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

175

Amino Acids

19.97

Weight (kDa)

10.09

Isoelectric Point (pI)

55.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029316)

Species Orthologous Gene IDs
pyrus_communis pycom07g05730 pycom07g05760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 416
AccII CGCG 1 cut(s) 343
AciI CCGC 1 cut(s) 343
AcsI RAATTY 4 cut(s) 30, 215, 254, 519
AcuI CTGAAG 1 cut(s) 261
AgsI TTSAA 5 cut(s) 29, 166, 310, 468, 506
AloI GAACNNNNNNTCC 2 cut(s) 138, 170
AluBI AGCT 1 cut(s) 249
AluI AGCT 1 cut(s) 249
ApeKI GCWGC 1 cut(s) 61
ApoI RAATTY 4 cut(s) 30, 215, 254, 519
AsuC2I CCSGG 1 cut(s) 185
AsuHPI GGTGA 4 cut(s) 16, 31, 187, 285
BbsI GAAGAC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 48
BceAI ACGGC 1 cut(s) 49
BcgI CGANNNNNNTGC 2 cut(s) 321, 355
BcnI CCSGG 1 cut(s) 185
BfaI CTAG 2 cut(s) 207, 473
BisI GCNGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 63
Bme1390I CCNGG 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 185
BmsI GCATC 1 cut(s) 296
BpiI GAAGAC 1 cut(s) 258
BplI GAGNNNNNCTC 2 cut(s) 385, 417
BpuMI CCSGG 1 cut(s) 185
BsaBI GATNNNNATC 1 cut(s) 286
BsaJI CCNNGG 2 cut(s) 65, 170
Bse118I RCCGGY 1 cut(s) 151
Bse3DI GCAATG 2 cut(s) 96, 332
Bse8I GATNNNNATC 1 cut(s) 286
BseDI CCNNGG 2 cut(s) 65, 170
BseGI GGATG 1 cut(s) 397
BseJI GATNNNNATC 1 cut(s) 286
BseMI GCAATG 2 cut(s) 96, 332
BseMII CTCAG 1 cut(s) 336
BseRI GAGGAG 1 cut(s) 386
BseXI GCAGC 1 cut(s) 48
Bsh1236I CGCG 1 cut(s) 343
BsiSI CCGG 2 cut(s) 152, 184
BslFI GGGAC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 200
BsmI GAATGC 1 cut(s) 337
Bsp143I GATC 1 cut(s) 119
BspACI CCGC 1 cut(s) 343
BspCNI CTCAG 1 cut(s) 335
BspFNI CGCG 1 cut(s) 343
BspHI TCATGA 1 cut(s) 81
BsrDI GCAATG 2 cut(s) 96, 332
BsrFI RCCGGY 1 cut(s) 151
BssAI RCCGGY 1 cut(s) 151
BssECI CCNNGG 2 cut(s) 65, 170
BssMI GATC 1 cut(s) 119
Bst4CI ACNGT 2 cut(s) 191, 306
Bst6I CTCTTC 1 cut(s) 408
BstDEI CTNAG 2 cut(s) 231, 322
BstDSI CCRYGG 1 cut(s) 65
BstEII GGTNACC 1 cut(s) 49
BstF5I GGATG 1 cut(s) 397
BstFNI CGCG 1 cut(s) 343
BstKTI GATC 1 cut(s) 122
BstMBI GATC 1 cut(s) 119
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstPI GGTNACC 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 183
BstUI CGCG 1 cut(s) 343
BstV1I GCAGC 1 cut(s) 48
BstV2I GAAGAC 1 cut(s) 258
BstXI CCANNNNNNTGG 1 cut(s) 124
BtgI CCRYGG 1 cut(s) 65
BtsCI GGATG 1 cut(s) 397
BtsIMutI CAGTG 1 cut(s) 330
CciI TCATGA 1 cut(s) 81
Cfr10I RCCGGY 1 cut(s) 151
CviAII CATG 4 cut(s) 82, 368, 379, 485
CviJI RGCY 5 cut(s) 70, 139, 237, 249, 320
CviKI_1 RGCY 5 cut(s) 70, 139, 237, 249, 320
DdeI CTNAG 2 cut(s) 231, 322
DpnI GATC 1 cut(s) 121
DpnII GATC 1 cut(s) 119
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
Eco57I CTGAAG 1 cut(s) 261
Eco91I GGTNACC 1 cut(s) 49
EcoO65I GGTNACC 1 cut(s) 49
EcoRI GAATTC 1 cut(s) 215
FaeI CATG 4 cut(s) 85, 371, 382, 488
FaqI GGGAC 1 cut(s) 200
FatI CATG 4 cut(s) 81, 367, 378, 484
FauI CCCGC 1 cut(s) 336
FblI GTMKAC 1 cut(s) 416
Fnu4HI GCNGC 1 cut(s) 62
FokI GGATG 1 cut(s) 384
Fsp4HI GCNGC 1 cut(s) 62
FspBI CTAG 2 cut(s) 207, 473
GluI GCNGC 1 cut(s) 62
HapII CCGG 2 cut(s) 152, 184
Hin1II CATG 4 cut(s) 85, 371, 382, 488
HinfI GANTC 1 cut(s) 394
HpaII CCGG 2 cut(s) 152, 184
HphI GGTGA 4 cut(s) 16, 31, 187, 285
Hpy166II GTNNAC 1 cut(s) 417
Hpy188I TCNGA 2 cut(s) 159, 253
Hpy188III TCNNGA 4 cut(s) 82, 279, 468, 503
Hpy8I GTNNAC 1 cut(s) 417
HpyAV CCTTC 1 cut(s) 285
HpyCH4III ACNGT 2 cut(s) 191, 306
HpyCH4V TGCA 5 cut(s) 111, 287, 332, 337, 484
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
HpyF3I CTNAG 2 cut(s) 231, 322
Hsp92II CATG 4 cut(s) 85, 371, 382, 488
Kzo9I GATC 1 cut(s) 119
LmnI GCTCC 1 cut(s) 415
LpnPI CCDG 8 cut(s) 20, 68, 130, 165, 197, 264, 420, 499
Lsp1109I GCAGC 1 cut(s) 48
LweI GCATC 1 cut(s) 296
MaeI CTAG 2 cut(s) 207, 473
MaeIII GTNAC 2 cut(s) 49, 444
MalI GATC 1 cut(s) 121
MboI GATC 1 cut(s) 119
MboII GAAGA 4 cut(s) 258, 261, 395, 399
MluCI AATT 4 cut(s) 30, 215, 254, 519
MlyI GAGTC 1 cut(s) 403
MnlI CCTC 5 cut(s) 9, 165, 331, 364, 411
MseI TTAA 2 cut(s) 243, 523
MslI CAYNNNNRTG 1 cut(s) 483
MspI CCGG 2 cut(s) 152, 184
MspR9I CCNGG 1 cut(s) 185
Mva1269I GAATGC 1 cut(s) 337
MvnI CGCG 1 cut(s) 343
MwoI GCNNNNNNNGC 1 cut(s) 67
NciI CCSGG 1 cut(s) 185
NdeII GATC 1 cut(s) 119
NlaIII CATG 4 cut(s) 85, 371, 382, 488
PagI TCATGA 1 cut(s) 81
PctI GAATGC 1 cut(s) 337
PkrI GCNGC 1 cut(s) 63
PleI GAGTC 1 cut(s) 402
PpsI GAGTC 1 cut(s) 402
PspEI GGTNACC 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 483
SaqAI TTAA 2 cut(s) 243, 523
SatI GCNGC 1 cut(s) 62
Sau3AI GATC 1 cut(s) 119
SchI GAGTC 1 cut(s) 403
ScrFI CCNGG 1 cut(s) 185
SetI ASST 3 cut(s) 229, 251, 500
SfaNI GCATC 1 cut(s) 296
SmiMI CAYNNNNRTG 1 cut(s) 483
Sse9I AATT 4 cut(s) 30, 215, 254, 519
SsiI CCGC 1 cut(s) 343
SspI AATATT 1 cut(s) 437
SspMI CTAG 2 cut(s) 207, 473
StyD4I CCNGG 1 cut(s) 183
TaaI ACNGT 2 cut(s) 191, 306
TasI AATT 4 cut(s) 30, 215, 254, 519
Tru1I TTAA 2 cut(s) 243, 523
Tru9I TTAA 2 cut(s) 243, 523
TscAI CASTG 1 cut(s) 330
TseI GCWGC 1 cut(s) 61
TspDTI ATGAA 2 cut(s) 98, 327
TspGWI ACGGA 1 cut(s) 402
TspRI CASTG 1 cut(s) 330
XapI RAATTY 4 cut(s) 30, 215, 254, 519
XmiI GTMKAC 1 cut(s) 416
XspI CTAG 2 cut(s) 207, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.