pycom07g06990

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0029317
Physical Location & Seq
Reverse (-)
6343448 .. 6345498
2051 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 915 bp
ATGGTCAAGCCCAATAAAAGAACCGGCATTGCTTCAAGAACAGGAAAAGCAGAAAACCAAAGCACAAAGGAATTCAGAATTCTTGTGCAACTCGAAGACAACCTTTTATTTAGGCTTCGCCCGACTTCTCAGATTCAGTCCGCGACGCCAACATCCAATCACTGCACCAATCGCACACGAACAATCGCAATGGCCGCCGCCGGAGTAGAGATCAAGCGCACGGACGCCGCGCCGGAGGAGACATGCTCCGCCAAGGCCTCCAAGCAAGGCGAGGGACTGCGGCAATACTACCTCCAGCACATCCACGAGCTTCAGCTTCAGGTCCGCCAGAAGACCCACAACCTCAATCGTCTCGAAGCTCAGCGCAACGAGCTCAATTCCCGAGTGAGAATGCTGAGGGAAGAACTACAGCTGCTTCAGGAGCCCGGATCATATGTTGGTGAAGTTGTCAAAGTAATGGGAAAGAACAAGGTTTTGGTTAAGGTTCATCCAGAAGGGAAATATGTCGTTGATATTGATAAAAACATTGATATCACAAAGATCACACCATCAACAAGAGTTGCTCTCCGCAATGACAGCTACGTGCTACACTTGGTCTTGCCAAGCAAAGTTGATCCTTTGGTCAACCTTATGAAAGTTGAAAAAGTTCCCGATTCTACTTATGATATGATCGGTGGCCTGGATCAGCAAATCAAGGAAATAAAGGAGGTCATTGAACTTCCAATTAAGCATCCTGAACTGTTTGAGAGTCTTGGTATAGCTCAGCCAAAGGGTGTGCTGCTTTATGGACCACCTGGCACTGGGAAAACACTTTTGGCTAGGGCTGTGGCCCATCATACTGACTGTACATTTATCAGGGTTTCTGGTTCGGAGTTGGTCCAGAAATACATTGGGGAAGGATCGAGAATGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

305

Amino Acids

34.06

Weight (kDa)

9.43

Isoelectric Point (pI)

45.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 146 - 201 3.5e-13 Proteasomal ATPase OB C-terminal domain
AAA PF00004 259 - 302 4.6e-14 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029317)

Species Orthologous Gene IDs
pyrus_communis pycom07g06990
rosa_samantha Rh2BG044800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 143, 230
AciI CCGC 8 cut(s) 141, 195, 198, 228, 249, 280, 325, 568
AclWI GGATC 4 cut(s) 436, 608, 690, 907
AcoI YGGCCR 1 cut(s) 192
AcsI RAATTY 2 cut(s) 71, 78
AcuI CTGAAG 3 cut(s) 296, 302, 401
AcyI GRCGYC 2 cut(s) 146, 225
AfaI GTAC 1 cut(s) 847
AfiI CCNNNNNNNGG 1 cut(s) 800
AgsI TTSAA 3 cut(s) 36, 641, 716
AjnI CCWGG 2 cut(s) 678, 793
AjuI GAANNNNNNNTTGG 4 cut(s) 458, 490, 797, 829
AluBI AGCT 7 cut(s) 310, 316, 359, 373, 412, 579, 761
AluI AGCT 7 cut(s) 310, 316, 359, 373, 412, 579, 761
Alw21I GWGCWC 1 cut(s) 375
Alw26I GTCTC 2 cut(s) 233, 356
AlwI GGATC 4 cut(s) 436, 608, 690, 907
Ama87I CYCGRG 1 cut(s) 381
AoxI GGCC 4 cut(s) 192, 255, 676, 828
ApeKI GCWGC 2 cut(s) 412, 778
ApoI RAATTY 2 cut(s) 71, 78
Asp700I GAANNNNTTC 1 cut(s) 645
AspLEI GCGC 3 cut(s) 219, 232, 366
AspS9I GGNCC 4 cut(s) 322, 788, 829, 877
AsuC2I CCSGG 1 cut(s) 426
AsuHPI GGTGA 1 cut(s) 452
AvaI CYCGRG 1 cut(s) 381
AvaII GGWCC 3 cut(s) 322, 788, 877
BanII GRGCYC 2 cut(s) 375, 426
BauI CACGAG 1 cut(s) 305
BbsI GAAGAC 2 cut(s) 102, 338
Bbv12I GWGCWC 1 cut(s) 375
BbvCI CCTCAGC 1 cut(s) 395
BbvI GCAGC 2 cut(s) 399, 765
BccI CCATC 2 cut(s) 556, 840
BciT130I CCWGG 2 cut(s) 680, 795
BcnI CCSGG 1 cut(s) 426
BcoDI GTCTC 2 cut(s) 233, 356
BfaI CTAG 1 cut(s) 819
BfmI CTRYAG 1 cut(s) 407
BisI GCNGC 6 cut(s) 195, 198, 228, 281, 413, 779
BlpI GCTNAGC 2 cut(s) 360, 762
BlsI GCNGC 6 cut(s) 196, 199, 229, 282, 414, 780
Bme1390I CCNGG 3 cut(s) 426, 680, 795
Bme18I GGWCC 3 cut(s) 322, 788, 877
BmeT110I CYCGRG 1 cut(s) 381
BmgT120I GGNCC 4 cut(s) 322, 788, 829, 877
BmiI GGNNCC 1 cut(s) 423
BmrFI CCNGG 3 cut(s) 426, 680, 795
BmrI ACTGGG 1 cut(s) 810
BmsI GCATC 1 cut(s) 739
BmuI ACTGGG 1 cut(s) 810
BpiI GAAGAC 2 cut(s) 102, 338
BplI GAGNNNNNCTC 4 cut(s) 230, 262, 549, 581
BpmI CTGGAG 1 cut(s) 278
Bpu10I CCTNAGC 1 cut(s) 395
Bpu1102I GCTNAGC 2 cut(s) 360, 762
BpuMI CCSGG 1 cut(s) 426
BsaAI YACGTR 1 cut(s) 583
BsaHI GRCGYC 2 cut(s) 146, 225
BsaJI CCNNGG 1 cut(s) 252
Bsc4I CCNNNNNNNGG 1 cut(s) 800
Bse118I RCCGGY 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 805
Bse3DI GCAATG 3 cut(s) 27, 195, 577
BseBI CCWGG 2 cut(s) 680, 795
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 4 cut(s) 152, 300, 487, 730
BseLI CCNNNNNNNGG 1 cut(s) 800
BseMI GCAATG 3 cut(s) 27, 195, 577
BseMII CTCAG 4 cut(s) 143, 374, 386, 776
BseNI ACTGG 1 cut(s) 805
BseRI GAGGAG 1 cut(s) 251
BseXI GCAGC 2 cut(s) 399, 765
BsgI GTGCAG 1 cut(s) 148
Bsh1236I CGCG 2 cut(s) 143, 230
BshFI GGCC 4 cut(s) 194, 257, 678, 830
BsiHKAI GWGCWC 1 cut(s) 375
BsiHKCI CYCGRG 1 cut(s) 381
BsiSI CCGG 4 cut(s) 24, 201, 233, 426
BslFI GGGAC 1 cut(s) 288
BslI CCNNNNNNNGG 1 cut(s) 800
BsmAI GTCTC 2 cut(s) 233, 356
BsmBI CGTCTC 1 cut(s) 356
BsmFI GGGAC 1 cut(s) 288
BsmI GAATGC 1 cut(s) 396
BsnI GGCC 4 cut(s) 194, 257, 678, 830
BsoBI CYCGRG 1 cut(s) 381
Bsp1286I GDGCHC 2 cut(s) 375, 426
Bsp1407I TGTACA 1 cut(s) 845
Bsp143I GATC 7 cut(s) 210, 428, 540, 613, 669, 682, 899
Bsp1720I GCTNAGC 2 cut(s) 360, 762
BspACI CCGC 8 cut(s) 141, 195, 198, 228, 249, 280, 325, 568
BspANI GGCC 4 cut(s) 194, 257, 678, 830
BspCNI CTCAG 4 cut(s) 142, 373, 387, 775
BspFNI CGCG 2 cut(s) 143, 230
BspLI GGNNCC 1 cut(s) 423
BspPI GGATC 4 cut(s) 436, 608, 690, 907
BsrDI GCAATG 3 cut(s) 27, 195, 577
BsrFI RCCGGY 1 cut(s) 23
BsrGI TGTACA 1 cut(s) 845
BsrI ACTGG 1 cut(s) 805
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 7 cut(s) 210, 428, 540, 613, 669, 682, 899
BssNI GRCGYC 2 cut(s) 146, 225
BssSI CACGAG 1 cut(s) 305
BssT1I CCWWGG 1 cut(s) 252
Bst2BI CACGAG 1 cut(s) 305
Bst2UI CCWGG 2 cut(s) 680, 795
Bst4CI ACNGT 2 cut(s) 741, 845
BstACI GRCGYC 2 cut(s) 146, 225
BstAUI TGTACA 1 cut(s) 845
BstBAI YACGTR 1 cut(s) 583
BstDEI CTNAG 4 cut(s) 129, 360, 395, 762
BstF5I GGATG 4 cut(s) 152, 300, 487, 730
BstFNI CGCG 2 cut(s) 143, 230
BstHHI GCGC 3 cut(s) 219, 232, 366
BstKTI GATC 7 cut(s) 213, 431, 543, 616, 672, 685, 902
BstMAI GTCTC 2 cut(s) 233, 356
BstMBI GATC 7 cut(s) 210, 428, 540, 613, 669, 682, 899
BstMWI GCNNNNNNNGC 5 cut(s) 171, 194, 370, 421, 576
BstNI CCWGG 2 cut(s) 680, 795
BstNSI RCATGY 1 cut(s) 246
BstSCI CCNGG 3 cut(s) 424, 678, 793
BstSFI CTRYAG 1 cut(s) 407
BstUI CGCG 2 cut(s) 143, 230
BstV1I GCAGC 2 cut(s) 399, 765
BstV2I GAAGAC 2 cut(s) 102, 338
BsuRI GGCC 4 cut(s) 194, 257, 678, 830
BtsCI GGATG 4 cut(s) 152, 300, 487, 730
BtsI GCAGTG 1 cut(s) 160
BtsIMutI CAGTG 2 cut(s) 160, 798
CfoI GCGC 3 cut(s) 219, 232, 366
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 4 cut(s) 322, 788, 829, 877
CseI GACGC 2 cut(s) 154, 233
Csp6I GTAC 1 cut(s) 846
CviAII CATG 1 cut(s) 243
CviQI GTAC 1 cut(s) 846
DdeI CTNAG 4 cut(s) 129, 360, 395, 762
DpnI GATC 7 cut(s) 212, 430, 542, 615, 671, 684, 901
DpnII GATC 7 cut(s) 210, 428, 540, 613, 669, 682, 899
EaeI YGGCCR 1 cut(s) 192
EciI GGCGGA 2 cut(s) 238, 314
Ecl136II GAGCTC 1 cut(s) 373
Eco130I CCWWGG 1 cut(s) 252
Eco147I AGGCCT 1 cut(s) 257
Eco24I GRGCYC 2 cut(s) 375, 426
Eco32I GATATC 1 cut(s) 532
Eco47I GGWCC 3 cut(s) 322, 788, 877
Eco53kI GAGCTC 1 cut(s) 373
Eco57I CTGAAG 3 cut(s) 296, 302, 401
Eco88I CYCGRG 1 cut(s) 381
EcoICRI GAGCTC 1 cut(s) 373
EcoRI GAATTC 2 cut(s) 71, 78
EcoRII CCWGG 2 cut(s) 678, 793
EcoRV GATATC 1 cut(s) 532
EcoT14I CCWWGG 1 cut(s) 252
EcoT38I GRGCYC 2 cut(s) 375, 426
ErhI CCWWGG 1 cut(s) 252
Esp3I CGTCTC 1 cut(s) 356
FaeI CATG 1 cut(s) 246
FalI AAGNNNNNCTT 2 cut(s) 87, 119
FaqI GGGAC 1 cut(s) 288
FatI CATG 1 cut(s) 242
FauNDI CATATG 1 cut(s) 433
Fnu4HI GCNGC 6 cut(s) 195, 198, 228, 281, 413, 779
FokI GGATG 4 cut(s) 139, 287, 474, 717
FriOI GRGCYC 2 cut(s) 375, 426
Fsp4HI GCNGC 6 cut(s) 195, 198, 228, 281, 413, 779
FspBI CTAG 1 cut(s) 819
GlaI GCGC 3 cut(s) 218, 231, 365
GluI GCNGC 6 cut(s) 195, 198, 228, 281, 413, 779
GsuI CTGGAG 1 cut(s) 278
HaeIII GGCC 4 cut(s) 194, 257, 678, 830
HapII CCGG 4 cut(s) 24, 201, 233, 426
HgaI GACGC 2 cut(s) 154, 233
HhaI GCGC 3 cut(s) 219, 232, 366
Hin1I GRCGYC 2 cut(s) 146, 225
Hin1II CATG 1 cut(s) 246
Hin6I GCGC 3 cut(s) 217, 230, 364
HinP1I GCGC 3 cut(s) 217, 230, 364
HincII GTYRAC 1 cut(s) 625
HindII GTYRAC 1 cut(s) 625
HinfI GANTC 3 cut(s) 133, 653, 748
HpaII CCGG 4 cut(s) 24, 201, 233, 426
HphI GGTGA 1 cut(s) 452
Hpy166II GTNNAC 1 cut(s) 625
Hpy188I TCNGA 4 cut(s) 77, 132, 871, 914
Hpy188III TCNNGA 9 cut(s) 36, 353, 381, 419, 491, 650, 734, 880, 903
Hpy8I GTNNAC 1 cut(s) 625
Hpy99I CGWCG 1 cut(s) 148
HpyAV CCTTC 2 cut(s) 488, 890
HpyCH4III ACNGT 2 cut(s) 741, 845
HpyCH4IV ACGT 1 cut(s) 582
HpyCH4V TGCA 2 cut(s) 88, 165
HpyF10VI GCNNNNNNNGC 5 cut(s) 171, 194, 370, 421, 576
HpyF3I CTNAG 4 cut(s) 129, 360, 395, 762
HpySE526I ACGT 1 cut(s) 582
Hsp92I GRCGYC 2 cut(s) 146, 225
Hsp92II CATG 1 cut(s) 246
HspAI GCGC 3 cut(s) 217, 230, 364
Kzo9I GATC 7 cut(s) 210, 428, 540, 613, 669, 682, 899
LmnI GCTCC 2 cut(s) 251, 421
Lsp1109I GCAGC 2 cut(s) 399, 765
LweI GCATC 1 cut(s) 739
MaeI CTAG 1 cut(s) 819
MaeII ACGT 1 cut(s) 582
MalI GATC 7 cut(s) 212, 430, 542, 615, 671, 684, 901
MboI GATC 7 cut(s) 210, 428, 540, 613, 669, 682, 899
MboII GAAGA 3 cut(s) 107, 343, 413
MhlI GDGCHC 2 cut(s) 375, 426
MluCI AATT 4 cut(s) 71, 78, 376, 723
MlyI GAGTC 1 cut(s) 757
MnlI CCTC 7 cut(s) 229, 265, 268, 302, 353, 390, 700
MroXI GAANNNNTTC 1 cut(s) 645
MseI TTAA 2 cut(s) 480, 726
MspA1I CMGCKG 1 cut(s) 412
MspI CCGG 4 cut(s) 24, 201, 233, 426
MspR9I CCNGG 3 cut(s) 426, 680, 795
Mva1269I GAATGC 1 cut(s) 396
MvaI CCWGG 2 cut(s) 680, 795
MvnI CGCG 2 cut(s) 143, 230
MwoI GCNNNNNNNGC 5 cut(s) 171, 194, 370, 421, 576
NciI CCSGG 1 cut(s) 426
NdeI CATATG 1 cut(s) 433
NdeII GATC 7 cut(s) 210, 428, 540, 613, 669, 682, 899
NlaIII CATG 1 cut(s) 246
NlaIV GGNNCC 1 cut(s) 423
NspI RCATGY 1 cut(s) 246
PceI AGGCCT 1 cut(s) 257
PctI GAATGC 1 cut(s) 396
PdmI GAANNNNTTC 1 cut(s) 645
PfeI GAWTC 2 cut(s) 133, 653
PkrI GCNGC 6 cut(s) 196, 199, 229, 282, 414, 780
PleI GAGTC 1 cut(s) 756
PpsI GAGTC 1 cut(s) 756
Ppu21I YACGTR 1 cut(s) 583
Psp124BI GAGCTC 1 cut(s) 375
Psp6I CCWGG 2 cut(s) 678, 793
PspGI CCWGG 2 cut(s) 678, 793
PspN4I GGNNCC 1 cut(s) 423
PspPI GGNCC 4 cut(s) 322, 788, 829, 877
PvuII CAGCTG 1 cut(s) 412
RsaI GTAC 1 cut(s) 847
RsaNI GTAC 1 cut(s) 846
SacI GAGCTC 1 cut(s) 375
SaqAI TTAA 2 cut(s) 480, 726
SatI GCNGC 6 cut(s) 195, 198, 228, 281, 413, 779
Sau3AI GATC 7 cut(s) 210, 428, 540, 613, 669, 682, 899
Sau96I GGNCC 4 cut(s) 322, 788, 829, 877
SchI GAGTC 1 cut(s) 757
ScrFI CCNGG 3 cut(s) 426, 680, 795
SduI GDGCHC 2 cut(s) 375, 426
SfaNI GCATC 1 cut(s) 739
SfcI CTRYAG 1 cut(s) 407
SinI GGWCC 3 cut(s) 322, 788, 877
Sse9I AATT 4 cut(s) 71, 78, 376, 723
SseBI AGGCCT 1 cut(s) 257
SsiI CCGC 8 cut(s) 141, 195, 198, 228, 249, 280, 325, 568
SspMI CTAG 1 cut(s) 819
SstI GAGCTC 1 cut(s) 375
StuI AGGCCT 1 cut(s) 257
StyD4I CCNGG 3 cut(s) 424, 678, 793
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 2 cut(s) 741, 845
TaiI ACGT 1 cut(s) 585
TaqI TCGA 3 cut(s) 93, 354, 902
TasI AATT 4 cut(s) 71, 78, 376, 723
TatI WGTACW 1 cut(s) 845
TauI GCSGC 4 cut(s) 197, 200, 230, 283
TfiI GAWTC 2 cut(s) 133, 653
Tru1I TTAA 2 cut(s) 480, 726
Tru9I TTAA 2 cut(s) 480, 726
TscAI CASTG 2 cut(s) 167, 805
TseI GCWGC 2 cut(s) 412, 778
TspDTI ATGAA 2 cut(s) 476, 647
TspGWI ACGGA 1 cut(s) 236
TspRI CASTG 2 cut(s) 167, 805
VpaK11BI GGWCC 3 cut(s) 322, 788, 877
XapI RAATTY 2 cut(s) 71, 78
XceI RCATGY 1 cut(s) 246
XcmI CCANNNNNNNNNTGG 1 cut(s) 887
XmnI GAANNNNTTC 1 cut(s) 645
XspI CTAG 1 cut(s) 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.