Rh2BG044800

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0029317
Physical Location & Seq
Reverse (-)
3189864 .. 3194808
4945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG044800.1

Sequence Viewer

Length: 774 bp
ATGGCTGCCGTCGGCGTCGAGACCAAGCCCGTCGAGGCCATGCCGGAGGACACCTGCTCCGCCAAGCTCGCCGCCTCCAAACTCGGCGAGGGGCTCCGCCCTTACTATCTCCAACACATTCACGAGCTCCAGCTCCAGGTCCGCCAGAAGACCCACAATCTCAATCGACTCGAGGCTCAGCGGAACGAGCTCAATTCCAGAGTGAGAATGCTCAGGGAAGAACTACAACTTCTTCAGGAGCCTGGGTCCTATGTCGGTGAGGTTGTCAACGTCATGGGAAAGAACAAGGTTTTGGTTAAGGTTCATCCGGAAGGGAAGTATGTGGTTGATATTGATAAGAACATTGATATCACAAAGATCACACCATCTACAAGAGTGGCTCTACGCAATGACAGCTATGTTCTTCATTTAGTGCTGCCAAGCAAAGTAGATCCTCTCGTCAATCTGATGAAAGTGGAAAAGGTTCCAGATTCTACATATGATATGATTGGTGGTCTGGATCAGCAGATTAAAGAAATCAAAGAGGTCATTGAACTTCCAATTAAACATCCTGAATTGTTTGAAAGTCTTGGAATAGCTCAGCCAAAGGGAGTCCTGCTTTATGGTCCCCCCGGCACTGGCAAAACCTTGTTGGCTAGGGCTGTGGCTCATCACACTGACTGTACTTTCATCAGGGTTTCTGGTTCAGAGTTGGTTCAGAAATACATTGGGGAAGGTTCCCGAATGGTTAGAGAACTTTTCGTAATGGCCAGGTTTGTTTTAATCTCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

257

Amino Acids

28.74

Weight (kDa)

8.4

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 85 - 140 4.5e-13 Proteasomal ATPase OB C-terminal domain
AAA PF00004 198 - 251 8.7e-17 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029317)

Species Orthologous Gene IDs
pyrus_communis pycom07g06990
rosa_samantha Rh2BG044800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 62
Acc36I ACCTGC 1 cut(s) 62
AccIII TCCGGA 1 cut(s) 307
AciI CCGC 5 cut(s) 60, 72, 97, 142, 181
AclWI GGATC 2 cut(s) 425, 507
AcoI YGGCCR 1 cut(s) 747
AcuI CTGAAG 1 cut(s) 218
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 1 cut(s) 664
AfiI CCNNNNNNNGG 2 cut(s) 136, 617
AgsI TTSAA 2 cut(s) 533, 563
AjnI CCWGG 3 cut(s) 135, 241, 749
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
AluBI AGCT 6 cut(s) 67, 127, 133, 190, 396, 578
AluI AGCT 6 cut(s) 67, 127, 133, 190, 396, 578
Alw21I GWGCWC 2 cut(s) 129, 192
Alw26I GTCTC 1 cut(s) 14
AlwI GGATC 2 cut(s) 425, 507
Ama87I CYCGRG 1 cut(s) 170
Aor13HI TCCGGA 1 cut(s) 307
AoxI GGCC 2 cut(s) 36, 747
ApeKI GCWGC 2 cut(s) 5, 415
Asp700I GAANNNNTTC 1 cut(s) 462
AspS9I GGNCC 3 cut(s) 139, 246, 605
AsuC2I CCSGG 1 cut(s) 612
AsuHPI GGTGA 1 cut(s) 269
AvaI CYCGRG 1 cut(s) 170
AvaII GGWCC 3 cut(s) 139, 246, 605
BalI TGGCCA 1 cut(s) 749
BanII GRGCYC 3 cut(s) 96, 129, 192
BauI CACGAG 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 155
Bbv12I GWGCWC 2 cut(s) 129, 192
BbvI GCAGC 1 cut(s) 402
BccI CCATC 1 cut(s) 373
BciT130I CCWGG 3 cut(s) 137, 243, 751
BcnI CCSGG 1 cut(s) 612
BcoDI GTCTC 1 cut(s) 14
BfaI CTAG 1 cut(s) 636
BfuAI ACCTGC 1 cut(s) 62
BisI GCNGC 3 cut(s) 6, 72, 416
BlpI GCTNAGC 2 cut(s) 177, 579
BlsI GCNGC 3 cut(s) 7, 73, 417
Bme1390I CCNGG 4 cut(s) 137, 243, 612, 751
Bme18I GGWCC 3 cut(s) 139, 246, 605
BmeT110I CYCGRG 1 cut(s) 170
BmgT120I GGNCC 3 cut(s) 139, 246, 605
BmiI GGNNCC 6 cut(s) 95, 240, 247, 465, 607, 718
BmrFI CCNGG 4 cut(s) 137, 243, 612, 751
BpiI GAAGAC 1 cut(s) 155
BpmI CTGGAG 2 cut(s) 113, 119
Bpu10I CCTNAGC 1 cut(s) 212
Bpu1102I GCTNAGC 2 cut(s) 177, 579
BpuMI CCSGG 1 cut(s) 612
BsaHI GRCGYC 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 14
BsaJI CCNNGG 2 cut(s) 242, 610
BsaWI WCCGGW 1 cut(s) 307
BsaXI ACNNNNNCTCC 4 cut(s) 41, 71, 230, 260
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 617
Bse1I ACTGG 1 cut(s) 622
Bse3DI GCAATG 1 cut(s) 394
BseAI TCCGGA 1 cut(s) 307
BseBI CCWGG 3 cut(s) 137, 243, 751
BseDI CCNNGG 2 cut(s) 242, 610
BseGI GGATG 2 cut(s) 304, 547
BseLI CCNNNNNNNGG 2 cut(s) 136, 617
BseMI GCAATG 1 cut(s) 394
BseMII CTCAG 3 cut(s) 191, 226, 593
BseNI ACTGG 1 cut(s) 622
BseXI GCAGC 1 cut(s) 402
BshFI GGCC 2 cut(s) 38, 749
BsiHKAI GWGCWC 2 cut(s) 129, 192
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 3 cut(s) 44, 308, 612
BslFI GGGAC 1 cut(s) 591
BslI CCNNNNNNNGG 2 cut(s) 136, 617
BsmAI GTCTC 1 cut(s) 14
BsmFI GGGAC 1 cut(s) 591
BsmI GAATGC 1 cut(s) 213
BsnI GGCC 2 cut(s) 38, 749
Bso31I GGTCTC 1 cut(s) 14
BsoBI CYCGRG 1 cut(s) 170
Bsp1286I GDGCHC 3 cut(s) 96, 129, 192
Bsp13I TCCGGA 1 cut(s) 307
Bsp143I GATC 3 cut(s) 357, 430, 499
Bsp1720I GCTNAGC 2 cut(s) 177, 579
BspACI CCGC 5 cut(s) 60, 72, 97, 142, 181
BspANI GGCC 2 cut(s) 38, 749
BspCNI CTCAG 3 cut(s) 190, 225, 592
BspEI TCCGGA 1 cut(s) 307
BspLI GGNNCC 6 cut(s) 95, 240, 247, 465, 607, 718
BspMI ACCTGC 1 cut(s) 62
BspPI GGATC 2 cut(s) 425, 507
BspTNI GGTCTC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 394
BsrI ACTGG 1 cut(s) 622
BssECI CCNNGG 2 cut(s) 242, 610
BssMI GATC 3 cut(s) 357, 430, 499
BssNI GRCGYC 1 cut(s) 15
BssSI CACGAG 1 cut(s) 122
Bst2BI CACGAG 1 cut(s) 122
Bst2UI CCWGG 3 cut(s) 137, 243, 751
Bst4CI ACNGT 1 cut(s) 662
BstACI GRCGYC 1 cut(s) 15
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 3 cut(s) 177, 212, 579
BstF5I GGATG 2 cut(s) 304, 547
BstKTI GATC 3 cut(s) 360, 433, 502
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 3 cut(s) 357, 430, 499
BstMWI GCNNNNNNNGC 3 cut(s) 68, 187, 393
BstNI CCWGG 3 cut(s) 137, 243, 751
BstSCI CCNGG 4 cut(s) 135, 241, 610, 749
BstV1I GCAGC 1 cut(s) 402
BstV2I GAAGAC 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BsuRI GGCC 2 cut(s) 38, 749
BtsCI GGATG 2 cut(s) 304, 547
BtsIMutI CAGTG 2 cut(s) 615, 654
BveI ACCTGC 1 cut(s) 62
Cac8I GCNNGC 1 cut(s) 69
Cfr13I GGNCC 3 cut(s) 139, 246, 605
CseI GACGC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 663
CviAII CATG 2 cut(s) 40, 274
CviQI GTAC 1 cut(s) 663
DdeI CTNAG 3 cut(s) 177, 212, 579
DpnI GATC 3 cut(s) 359, 432, 501
DpnII GATC 3 cut(s) 357, 430, 499
EaeI YGGCCR 1 cut(s) 747
EciI GGCGGA 3 cut(s) 49, 86, 131
Ecl136II GAGCTC 2 cut(s) 127, 190
Eco24I GRGCYC 3 cut(s) 96, 129, 192
Eco31I GGTCTC 1 cut(s) 14
Eco32I GATATC 1 cut(s) 349
Eco47I GGWCC 3 cut(s) 139, 246, 605
Eco53kI GAGCTC 2 cut(s) 127, 190
Eco57I CTGAAG 1 cut(s) 218
Eco88I CYCGRG 1 cut(s) 170
EcoICRI GAGCTC 2 cut(s) 127, 190
EcoO109I RGGNCCY 1 cut(s) 246
EcoRII CCWGG 3 cut(s) 135, 241, 749
EcoRV GATATC 1 cut(s) 349
EcoT38I GRGCYC 3 cut(s) 96, 129, 192
FaeI CATG 2 cut(s) 43, 277
FaiI YATR 9 cut(s) 41, 252, 275, 321, 399, 478, 480, 485, 603
FaqI GGGAC 1 cut(s) 591
FatI CATG 2 cut(s) 39, 273
FauNDI CATATG 1 cut(s) 478
Fnu4HI GCNGC 3 cut(s) 6, 72, 416
FokI GGATG 2 cut(s) 291, 534
FriOI GRGCYC 3 cut(s) 96, 129, 192
Fsp4HI GCNGC 3 cut(s) 6, 72, 416
FspBI CTAG 1 cut(s) 636
GluI GCNGC 3 cut(s) 6, 72, 416
GsuI CTGGAG 2 cut(s) 113, 119
HaeIII GGCC 2 cut(s) 38, 749
HapII CCGG 3 cut(s) 44, 308, 612
HgaI GACGC 1 cut(s) 4
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 2 cut(s) 43, 277
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 3 cut(s) 168, 470, 591
HpaII CCGG 3 cut(s) 44, 308, 612
HphI GGTGA 1 cut(s) 269
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 3 cut(s) 447, 688, 699
Hpy188III TCNNGA 9 cut(s) 19, 122, 198, 236, 308, 467, 497, 551, 720
Hpy8I GTNNAC 1 cut(s) 268
Hpy99I CGWCG 3 cut(s) 14, 20, 35
HpyAV CCTTC 2 cut(s) 305, 707
HpyCH4III ACNGT 1 cut(s) 662
HpyCH4IV ACGT 1 cut(s) 270
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 187, 393
HpyF3I CTNAG 3 cut(s) 177, 212, 579
HpySE526I ACGT 1 cut(s) 270
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 2 cut(s) 43, 277
Kpn2I TCCGGA 1 cut(s) 307
Kzo9I GATC 3 cut(s) 357, 430, 499
LmnI GCTCC 5 cut(s) 62, 99, 132, 138, 238
Lsp1109I GCAGC 1 cut(s) 402
MaeI CTAG 1 cut(s) 636
MaeII ACGT 1 cut(s) 270
MalI GATC 3 cut(s) 359, 432, 501
MboI GATC 3 cut(s) 357, 430, 499
MboII GAAGA 5 cut(s) 160, 224, 230, 395, 759
MflI RGATCY 1 cut(s) 430
MhlI GDGCHC 3 cut(s) 96, 129, 192
MlsI TGGCCA 1 cut(s) 749
MluCI AATT 3 cut(s) 193, 540, 554
MluNI TGGCCA 1 cut(s) 749
MlyI GAGTC 2 cut(s) 162, 600
MmeI TCCRAC 1 cut(s) 136
MnlI CCTC 8 cut(s) 28, 40, 82, 85, 166, 253, 444, 517
Mox20I TGGCCA 1 cut(s) 749
MroI TCCGGA 1 cut(s) 307
MroXI GAANNNNTTC 1 cut(s) 462
MscI TGGCCA 1 cut(s) 749
MseI TTAA 5 cut(s) 297, 510, 543, 761, 772
Msp20I TGGCCA 1 cut(s) 749
MspA1I CMGCKG 1 cut(s) 181
MspI CCGG 3 cut(s) 44, 308, 612
MspR9I CCNGG 4 cut(s) 137, 243, 612, 751
Mva1269I GAATGC 1 cut(s) 213
MvaI CCWGG 3 cut(s) 137, 243, 751
MwoI GCNNNNNNNGC 3 cut(s) 68, 187, 393
NciI CCSGG 1 cut(s) 612
NdeI CATATG 1 cut(s) 478
NdeII GATC 3 cut(s) 357, 430, 499
NlaIII CATG 2 cut(s) 43, 277
NlaIV GGNNCC 6 cut(s) 95, 240, 247, 465, 607, 718
NmeAIII GCCGAG 1 cut(s) 63
PaeR7I CTCGAG 1 cut(s) 170
PaqCI CACCTGC 1 cut(s) 62
PctI GAATGC 1 cut(s) 213
PdmI GAANNNNTTC 1 cut(s) 462
PfeI GAWTC 1 cut(s) 470
PkrI GCNGC 3 cut(s) 7, 73, 417
PleI GAGTC 2 cut(s) 162, 599
PpsI GAGTC 2 cut(s) 162, 599
PpuMI RGGWCCY 1 cut(s) 246
Psp124BI GAGCTC 2 cut(s) 129, 192
Psp5II RGGWCCY 1 cut(s) 246
Psp6I CCWGG 3 cut(s) 135, 241, 749
PspGI CCWGG 3 cut(s) 135, 241, 749
PspN4I GGNNCC 6 cut(s) 95, 240, 247, 465, 607, 718
PspPI GGNCC 3 cut(s) 139, 246, 605
PspPPI RGGWCCY 1 cut(s) 246
PspXI VCTCGAGB 1 cut(s) 170
PsuI RGATCY 1 cut(s) 430
RsaI GTAC 1 cut(s) 664
RsaNI GTAC 1 cut(s) 663
SacI GAGCTC 2 cut(s) 129, 192
SaqAI TTAA 5 cut(s) 297, 510, 543, 761, 772
SatI GCNGC 3 cut(s) 6, 72, 416
Sau3AI GATC 3 cut(s) 357, 430, 499
Sau96I GGNCC 3 cut(s) 139, 246, 605
SchI GAGTC 2 cut(s) 162, 600
ScrFI CCNGG 4 cut(s) 137, 243, 612, 751
SduI GDGCHC 3 cut(s) 96, 129, 192
Sfr274I CTCGAG 1 cut(s) 170
SinI GGWCC 3 cut(s) 139, 246, 605
SlaI CTCGAG 1 cut(s) 170
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 3 cut(s) 193, 540, 554
SsiI CCGC 5 cut(s) 60, 72, 97, 142, 181
SspMI CTAG 1 cut(s) 636
SstI GAGCTC 2 cut(s) 129, 192
StyD4I CCNGG 4 cut(s) 135, 241, 610, 749
TaaI ACNGT 1 cut(s) 662
TaiI ACGT 1 cut(s) 273
TaqI TCGA 4 cut(s) 18, 33, 166, 171
TasI AATT 3 cut(s) 193, 540, 554
TatI WGTACW 1 cut(s) 662
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 1 cut(s) 470
Tru1I TTAA 5 cut(s) 297, 510, 543, 761, 772
Tru9I TTAA 5 cut(s) 297, 510, 543, 761, 772
TscAI CASTG 2 cut(s) 622, 661
TseI GCWGC 2 cut(s) 5, 415
TspDTI ATGAA 4 cut(s) 293, 395, 464, 658
TspRI CASTG 2 cut(s) 622, 661
VpaK11BI GGWCC 3 cut(s) 139, 246, 605
XhoI CTCGAG 1 cut(s) 170
XmnI GAANNNNTTC 1 cut(s) 462
XspI CTAG 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.