Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0023587

Physical Location & Seq

Genomic Coordinates Reverse (-)

13484053 .. 13484445

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGACCGAATGTGACACCAACGCACCAACCGAGCATCCTATTTCCCAGGCTGATGCTGAATGCTGCATCTGCCTTTCTGTGTACGAGAATGGAGCAGAACTACGCCAACTTCCTTGCCAGCATCATTTTCACTGCACTTGCATAGACAAATGGTTACATATCAATGCTACCTGCCCTATGTGCAAGTTCAACATTTTAAAGCCCCGTGACCGACATGAAATCGGACTAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031090 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

78

Amino Acids

8.8

Weight (kDa)

5.77

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	20 - 62	9.5e-15	Ring finger domain
zf-RING_11	PF17123	20 - 48	2.6e-09	RING-like zinc finger
zf-rbx1	PF12678	20 - 62	5.2e-07	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	20 - 61	1e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	21 - 61	7.3e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11680 AT4G11680
pyrus_communis	pycom07g12210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	179
AfaI	GTAC	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	190
AhlI	ACTAGT	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	47
BcuI	ACTAGT	1 cut(s)	226
BfaI	CTAG	1 cut(s)	227
BfuAI	ACCTGC	1 cut(s)	179
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
Bme1390I	CCNGG	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	4 cut(s)	43, 43, 75, 130
BsaJI	CCNNGG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	1 cut(s)	34
BseXI	GCAGC	1 cut(s)	50
BsgI	GTGCAG	1 cut(s)	118
BsmI	GAATGC	1 cut(s)	65
BspMI	ACCTGC	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	119
BstF5I	GGATG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 180
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	34
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	130
BveI	ACCTGC	1 cut(s)	179
Cac8I	GCNNGC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	1 cut(s)	215
CviJI	RGCY	2 cut(s)	50, 202
CviKI_1	RGCY	2 cut(s)	50, 202
CviQI	GTAC	1 cut(s)	82
DraI	TTTAAA	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	45
FaeI	CATG	1 cut(s)	218
FaiI	YATR	4 cut(s)	143, 159, 179, 216
FatI	CATG	1 cut(s)	214
Fnu4HI	GCNGC	1 cut(s)	64
FokI	GGATG	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	64
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	1 cut(s)	64
Hin1II	CATG	1 cut(s)	218
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	224
Hpy8I	GTNNAC	1 cut(s)	82
HpyCH4V	TGCA	4 cut(s)	66, 135, 141, 183
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 180
Hsp92II	CATG	1 cut(s)	218
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	4 cut(s)	32, 59, 131, 184
Lsp1109I	GCAGC	1 cut(s)	50
LweI	GCATC	4 cut(s)	43, 43, 75, 130
MaeI	CTAG	1 cut(s)	227
MaeIII	GTNAC	3 cut(s)	11, 153, 206
MseI	TTAA	1 cut(s)	197
MslI	CAYNNNNRTG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	47
Mva1269I	GAATGC	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	2 cut(s)	69, 180
NlaIII	CATG	1 cut(s)	218
NmuCI	GTSAC	2 cut(s)	11, 206
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PctI	GAATGC	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	197
SatI	GCNGC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	47
SetI	ASST	1 cut(s)	173
SfaNI	GCATC	4 cut(s)	43, 43, 75, 130
SmiMI	CAYNNNNRTG	1 cut(s)	162
SpeI	ACTAGT	1 cut(s)	226
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	45
TaqII	GACCGA	2 cut(s)	20, 225
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TscAI	CASTG	1 cut(s)	137
TseFI	GTSAC	2 cut(s)	11, 206
TseI	GCWGC	1 cut(s)	63
Tsp45I	GTSAC	2 cut(s)	11, 206
TspDTI	ATGAA	1 cut(s)	231
TspRI	CASTG	1 cut(s)	137
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.