Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0029194

Physical Location & Seq

Genomic Coordinates Forward (+)

16142576 .. 16143349

Gene Structure 774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGAAGGAATTGAATACGGATCTATTCGACCCGAGAACTACGCTGATGGAACCCGACTTCTCGCGGGCCGTGACGCCGTTGGCCGACGCTGACGGCGACGATTTCGCCTTCGCCTTTAACGACAGTAACTTCTCCGACCGACAGCTTCGGATCGATCTAGCATGGGTGACACACCCGAGTCCAGACCCGATTCCGAGGCCTGCACCAGTATCGCTGATTGGGCCCTCCACAGGAAGCGGCGGAGAGAAGACATCAAGAAGGAAAACATTCTGGATCGATCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0031461 GO:0031463 GO:0032991 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0050896 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

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Protein Analysis

95

Amino Acids

10.49

Weight (kDa)

4.75

Isoelectric Point (pI)

33.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029194)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g10340 pycom07g14180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	64
AciI	CCGC	3 cut(s)	64, 237, 240
AclWI	GGATC	3 cut(s)	27, 158, 281
AcoI	YGGCCR	1 cut(s)	81
AcyI	GRCGYC	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgsI	TTSAA	1 cut(s)	13
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
AlwI	GGATC	3 cut(s)	27, 158, 281
Ama87I	CYCGRG	2 cut(s)	31, 175
AoxI	GGCC	4 cut(s)	66, 81, 197, 221
ApaI	GGGCCC	1 cut(s)	225
Asp700I	GAANNNNTTC	1 cut(s)	266
AspS9I	GGNCC	3 cut(s)	66, 221, 222
AsuHPI	GGTGA	1 cut(s)	178
AvaI	CYCGRG	2 cut(s)	31, 175
BaeGI	GKGCMC	1 cut(s)	225
BanII	GRGCYC	1 cut(s)	225
BbsI	GAAGAC	1 cut(s)	254
BccI	CCATC	1 cut(s)	40
BceAI	ACGGC	3 cut(s)	53, 61, 109
BcgI	CGANNNNNNTGC	2 cut(s)	192, 226
BfaI	CTAG	1 cut(s)	158
BisI	GCNGC	1 cut(s)	238
BlsI	GCNGC	1 cut(s)	239
BmeT110I	CYCGRG	2 cut(s)	31, 175
BmgT120I	GGNCC	3 cut(s)	66, 221, 222
BmiI	GGNNCC	2 cut(s)	51, 223
BpiI	GAAGAC	1 cut(s)	254
Bsa29I	ATCGAT	2 cut(s)	153, 276
BsaHI	GRCGYC	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	206
BseCI	ATCGAT	2 cut(s)	153, 276
BseDI	CCNNGG	1 cut(s)	194
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseNI	ACTGG	1 cut(s)	206
BseSI	GKGCMC	1 cut(s)	225
BsgI	GTGCAG	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	64
Bsh1285I	CGRYCG	2 cut(s)	139, 280
BshFI	GGCC	4 cut(s)	68, 83, 199, 223
BshVI	ATCGAT	2 cut(s)	153, 276
BsiEI	CGRYCG	2 cut(s)	139, 280
BsiHKCI	CYCGRG	2 cut(s)	31, 175
BslI	CCNNNNNNNGG	1 cut(s)	230
BsnI	GGCC	4 cut(s)	68, 83, 199, 223
BsoBI	CYCGRG	2 cut(s)	31, 175
Bsp120I	GGGCCC	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	5 cut(s)	19, 150, 154, 273, 277
BspACI	CCGC	3 cut(s)	64, 237, 240
BspANI	GGCC	4 cut(s)	68, 83, 199, 223
BspDI	ATCGAT	2 cut(s)	153, 276
BspFNI	CGCG	1 cut(s)	64
BspLI	GGNNCC	2 cut(s)	51, 223
BspPI	GGATC	3 cut(s)	27, 158, 281
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	5 cut(s)	19, 150, 154, 273, 277
BssNI	GRCGYC	1 cut(s)	74
Bst4CI	ACNGT	1 cut(s)	125
BstACI	GRCGYC	1 cut(s)	74
BstC8I	GCNNGC	2 cut(s)	66, 201
BstFNI	CGCG	1 cut(s)	64
BstKTI	GATC	5 cut(s)	22, 153, 157, 276, 280
BstMBI	GATC	5 cut(s)	19, 150, 154, 273, 277
BstMCI	CGRYCG	2 cut(s)	139, 280
BstMWI	GCNNNNNNNGC	1 cut(s)	220
BstSLI	GKGCMC	1 cut(s)	225
BstUI	CGCG	1 cut(s)	64
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
Bsu15I	ATCGAT	2 cut(s)	153, 276
BsuRI	GGCC	4 cut(s)	68, 83, 199, 223
BsuTUI	ATCGAT	2 cut(s)	153, 276
Cac8I	GCNNGC	2 cut(s)	66, 201
Cfr13I	GGNCC	3 cut(s)	66, 221, 222
ClaI	ATCGAT	2 cut(s)	153, 276
CseI	GACGC	2 cut(s)	82, 95
CviAII	CATG	1 cut(s)	162
CviJI	RGCY	5 cut(s)	68, 83, 145, 199, 223
CviKI_1	RGCY	5 cut(s)	68, 83, 145, 199, 223
DpnI	GATC	5 cut(s)	21, 152, 156, 275, 279
DpnII	GATC	5 cut(s)	19, 150, 154, 273, 277
EaeI	YGGCCR	1 cut(s)	81
EciI	GGCGGA	1 cut(s)	255
Eco147I	AGGCCT	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	225
Eco88I	CYCGRG	2 cut(s)	31, 175
EcoO109I	RGGNCCY	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	225
FaeI	CATG	1 cut(s)	165
FaiI	YATR	1 cut(s)	163
FatI	CATG	1 cut(s)	161
FauI	CCCGC	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	238
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	1 cut(s)	238
FspBI	CTAG	1 cut(s)	158
GluI	GCNGC	1 cut(s)	238
HaeIII	GGCC	4 cut(s)	68, 83, 199, 223
HgaI	GACGC	2 cut(s)	82, 95
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	165
HinfI	GANTC	2 cut(s)	178, 190
HphI	GGTGA	1 cut(s)	178
Hpy188I	TCNGA	3 cut(s)	136, 150, 195
Hpy188III	TCNNGA	3 cut(s)	182, 255, 271
Hpy99I	CGWCG	2 cut(s)	89, 101
HpyAV	CCTTC	2 cut(s)	118, 252
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4V	TGCA	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	220
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	1 cut(s)	165
Kzo9I	GATC	5 cut(s)	19, 150, 154, 273, 277
LpnPI	CCDG	5 cut(s)	195, 213, 216, 219, 256
MaeI	CTAG	1 cut(s)	158
MaeIII	GTNAC	3 cut(s)	70, 125, 166
MalI	GATC	5 cut(s)	21, 152, 156, 275, 279
MboI	GATC	5 cut(s)	19, 150, 154, 273, 277
MboII	GAAGA	1 cut(s)	259
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	187
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	2 cut(s)	189, 235
MroXI	GAANNNNTTC	1 cut(s)	266
MseI	TTAA	1 cut(s)	117
MvnI	CGCG	1 cut(s)	64
MwoI	GCNNNNNNNGC	1 cut(s)	220
NdeII	GATC	5 cut(s)	19, 150, 154, 273, 277
NlaIII	CATG	1 cut(s)	165
NlaIV	GGNNCC	2 cut(s)	51, 223
NmuCI	GTSAC	2 cut(s)	70, 166
PceI	AGGCCT	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 117
PdmI	GAANNNNTTC	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	190
PkrI	GCNGC	1 cut(s)	239
Ple19I	CGATCG	1 cut(s)	280
PleI	GAGTC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	186
PspN4I	GGNNCC	2 cut(s)	51, 223
PspOMI	GGGCCC	1 cut(s)	221
PspPI	GGNCC	3 cut(s)	66, 221, 222
PsuI	RGATCY	1 cut(s)	19
PvuI	CGATCG	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	1 cut(s)	238
Sau3AI	GATC	5 cut(s)	19, 150, 154, 273, 277
Sau96I	GGNCC	3 cut(s)	66, 221, 222
SchI	GAGTC	1 cut(s)	187
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	1 cut(s)	147
Sse9I	AATT	1 cut(s)	8
SseBI	AGGCCT	1 cut(s)	199
SsiI	CCGC	3 cut(s)	64, 237, 240
SspMI	CTAG	1 cut(s)	158
StuI	AGGCCT	1 cut(s)	199
TaaI	ACNGT	1 cut(s)	125
TaqI	TCGA	3 cut(s)	27, 153, 276
TaqII	GACCGA	1 cut(s)	153
TasI	AATT	1 cut(s)	8
TauI	GCSGC	1 cut(s)	240
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TseFI	GTSAC	2 cut(s)	70, 166
Tsp45I	GTSAC	2 cut(s)	70, 166
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	32
XmnI	GAANNNNTTC	1 cut(s)	266
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.