Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0028843

Physical Location & Seq

Genomic Coordinates Reverse (-)

18635325 .. 18636098

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGAAGAATGTGAAGAAAAACATCTCTTAAAACAAAAAGCCAATGCCTTTATTATATTCGTCTCCAATTCTTTTTTACCCGCCACCACCAACTGCTCCAACGACCATGCGCCACTTCCCTCCTCAACGCCTCACCACGTGTCCTTCATCCTCTCTACGGCGCCGTTTCGCCTCCGAACCAAACCCCCTTCCACTCCACTCCGCCGAGGTTTTCAGAAACCCGAATTGGCAATGCAACGCAAGCCGTCCTCCTCCGTATCAATGTCGGCCGAGGAGCAGTCCGCTTCGACCTCCCAGAGGGGTGATCAACTGCAGGGTGGTTTGTTGTATTCAAGGGCGGTCTGTGTTAGTGAATCGATTATTGCCTGGAATGTGGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009250 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010303 GO:0016051 GO:0016052 GO:0016787 GO:0016798 GO:0019252 GO:0033692 GO:0034637 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051060 GO:0071704 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_48 DUF3372

Protein Analysis

128

Amino Acids

13.99

Weight (kDa)

8.56

Isoelectric Point (pI)

64.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028843)

Species	Orthologous Gene IDs
malus_domestica	MD07G1167000.v1.1
pyrus_communis	pycom07g16200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	160
AciI	CCGC	4 cut(s)	81, 202, 282, 338
AcoI	YGGCCR	1 cut(s)	267
AcvI	CACGTG	1 cut(s)	139
AcyI	GRCGYC	1 cut(s)	161
AdeI	CACNNNGTG	1 cut(s)	139
AfiI	CCNNNNNNNGG	2 cut(s)	157, 297
AflIII	ACRYGT	1 cut(s)	138
AgsI	TTSAA	1 cut(s)	333
AjnI	CCWGG	1 cut(s)	365
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
Alw26I	GTCTC	1 cut(s)	67
AoxI	GGCC	1 cut(s)	267
AspLEI	GCGC	2 cut(s)	112, 163
AsuHPI	GGTGA	2 cut(s)	125, 314
BanI	GGYRCC	1 cut(s)	160
BbrPI	CACGTG	1 cut(s)	139
BceAI	ACGGC	3 cut(s)	148, 174, 229
BciT130I	CCWGG	1 cut(s)	367
BclI	TGATCA	1 cut(s)	304
BcoDI	GTCTC	1 cut(s)	67
BfmI	CTRYAG	1 cut(s)	311
BfoI	RGCGCY	1 cut(s)	164
Bme1390I	CCNGG	1 cut(s)	367
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	367
Bsa29I	ATCGAT	1 cut(s)	356
BsaAI	YACGTR	1 cut(s)	139
BsaHI	GRCGYC	1 cut(s)	161
BsaJI	CCNNGG	2 cut(s)	205, 270
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 297
Bse3DI	GCAATG	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	367
BseCI	ATCGAT	1 cut(s)	356
BseDI	CCNNGG	2 cut(s)	205, 270
BseGI	GGATG	2 cut(s)	147, 382
BseLI	CCNNNNNNNGG	2 cut(s)	157, 297
BseMI	GCAATG	1 cut(s)	237
BseRI	GAGGAG	3 cut(s)	112, 241, 287
BseX3I	CGGCCG	1 cut(s)	267
Bsh1285I	CGRYCG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	269
BshNI	GGYRCC	1 cut(s)	160
BshVI	ATCGAT	1 cut(s)	356
BsiEI	CGRYCG	1 cut(s)	270
BslI	CCNNNNNNNGG	2 cut(s)	157, 297
BsmAI	GTCTC	1 cut(s)	67
BsmBI	CGTCTC	1 cut(s)	67
BsnI	GGCC	1 cut(s)	269
Bsp143I	GATC	1 cut(s)	304
BspACI	CCGC	4 cut(s)	81, 202, 282, 338
BspANI	GGCC	1 cut(s)	269
BspDI	ATCGAT	1 cut(s)	356
BspLI	GGNNCC	1 cut(s)	162
BspMAI	CTGCAG	1 cut(s)	315
BspT107I	GGYRCC	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	237
BssECI	CCNNGG	2 cut(s)	205, 270
BssMI	GATC	1 cut(s)	304
BssNI	GRCGYC	1 cut(s)	161
Bst2UI	CCWGG	1 cut(s)	367
BstACI	GRCGYC	1 cut(s)	161
BstBAI	YACGTR	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	242
BstENI	CCTNNNNNAGG	1 cut(s)	295
BstF5I	GGATG	2 cut(s)	147, 382
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	2 cut(s)	112, 163
BstKTI	GATC	1 cut(s)	307
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	304
BstMCI	CGRYCG	1 cut(s)	270
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstNI	CCWGG	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	365
BstSFI	CTRYAG	1 cut(s)	311
BstZI	CGGCCG	1 cut(s)	267
Bsu15I	ATCGAT	1 cut(s)	356
BsuRI	GGCC	1 cut(s)	269
BsuTUI	ATCGAT	1 cut(s)	356
BtsCI	GGATG	2 cut(s)	147, 382
Cac8I	GCNNGC	1 cut(s)	242
CfoI	GCGC	2 cut(s)	112, 163
ClaI	ATCGAT	1 cut(s)	356
CviAII	CATG	1 cut(s)	107
CviJI	RGCY	3 cut(s)	41, 244, 269
CviKI_1	RGCY	3 cut(s)	41, 244, 269
DinI	GGCGCC	1 cut(s)	162
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
DraIII	CACNNNGTG	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	267
EagI	CGGCCG	1 cut(s)	267
EciI	GGCGGA	1 cut(s)	191
EclXI	CGGCCG	1 cut(s)	267
Eco52I	CGGCCG	1 cut(s)	267
Eco72I	CACGTG	1 cut(s)	139
EcoNI	CCTNNNNNAGG	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	365
EgeI	GGCGCC	1 cut(s)	162
EheI	GGCGCC	1 cut(s)	162
Esp3I	CGTCTC	1 cut(s)	67
FaeI	CATG	1 cut(s)	110
FaiI	YATR	2 cut(s)	56, 108
FatI	CATG	1 cut(s)	106
FauI	CCCGC	1 cut(s)	88
FbaI	TGATCA	1 cut(s)	304
FokI	GGATG	1 cut(s)	134
GlaI	GCGC	2 cut(s)	111, 162
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	269
HhaI	GCGC	2 cut(s)	112, 163
Hin1I	GRCGYC	1 cut(s)	161
Hin1II	CATG	1 cut(s)	110
Hin6I	GCGC	2 cut(s)	110, 161
HinP1I	GCGC	2 cut(s)	110, 161
HinfI	GANTC	1 cut(s)	353
HphI	GGTGA	2 cut(s)	125, 314
Hpy188I	TCNGA	2 cut(s)	176, 216
HpyAV	CCTTC	2 cut(s)	154, 198
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	2 cut(s)	235, 313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	1 cut(s)	161
Hsp92II	CATG	1 cut(s)	110
HspAI	GCGC	2 cut(s)	110, 161
KasI	GGCGCC	1 cut(s)	160
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	1 cut(s)	304
LmnI	GCTCC	2 cut(s)	101, 274
LpnPI	CCDG	4 cut(s)	299, 308, 352, 379
MaeII	ACGT	1 cut(s)	138
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	2 cut(s)	17, 26
MluCI	AATT	2 cut(s)	67, 224
Mly113I	GGCGCC	1 cut(s)	161
MmeI	TCCRAC	1 cut(s)	123
MseI	TTAA	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	367
MwoI	GCNNNNNNNGC	1 cut(s)	241
NarI	GGCGCC	1 cut(s)	161
NdeII	GATC	1 cut(s)	304
NlaIII	CATG	1 cut(s)	110
NlaIV	GGNNCC	1 cut(s)	162
NmeAIII	GCCGAG	2 cut(s)	230, 295
PfeI	GAWTC	1 cut(s)	353
PluTI	GGCGCC	1 cut(s)	164
PmaCI	CACGTG	1 cut(s)	139
PmlI	CACGTG	1 cut(s)	139
Ppu21I	YACGTR	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	365
PspCI	CACGTG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	365
PspN4I	GGNNCC	1 cut(s)	162
PstI	CTGCAG	1 cut(s)	315
SaqAI	TTAA	1 cut(s)	29
Sau3AI	GATC	1 cut(s)	304
ScrFI	CCNGG	1 cut(s)	367
SetI	ASST	3 cut(s)	141, 211, 293
SfcI	CTRYAG	1 cut(s)	311
SfoI	GGCGCC	1 cut(s)	162
Sse9I	AATT	2 cut(s)	67, 224
SsiI	CCGC	4 cut(s)	81, 202, 282, 338
SspDI	GGCGCC	1 cut(s)	160
StyD4I	CCNGG	1 cut(s)	365
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	287, 356
TasI	AATT	2 cut(s)	67, 224
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	136
TspGWI	ACGGA	1 cut(s)	244
XagI	CCTNNNNNAGG	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.