Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0029327

Physical Location & Seq

Genomic Coordinates Reverse (-)

20026870 .. 20028061

Gene Structure 1192 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGAGAGGTTCAAGGATAACTTGGAGTTCACAAAGCTGAAAACCAACCAGGAAGGAGTTGACCCAGATGATGTGTATTCTGAAGTTCCATACGAAAAGGGTTTCCAGTTTCTGTGGCGCATTGAACGTCAGGTTGGAAGGCCTGCATTTGATGAGTTTCTGAAGAAATACATTGCCACCTTCAAGTTCCAATCAATTGATACCGATACATTTCTCGACTTTCTGAAAGCAAACCTACCTGGAATAGAGAAAGAGGTTGACTTAGTGTTGTGGACTGAGGGCACCGGTATCCCTCCTGATGCGTATGAACCGGTTTCTAACATATATGCAAAGATTGTGTCCATGGCAAATGAATTTAAGTTTGGTAGGATGCCAGGGGCGGATGAAGTTGCTGACTGGAGAGGGCAGGAGTGGGAACTCTACTTGGAGAACCTCCCCAAGTCTATTGAACCTTTACAGATTGTAGAGTTGAACTCGCGCTTCAGTCTGTCAGAATCGAGAGATTATGACGTGAAGGTGACATTTCTCCTGCTGGCCATTGCATCCAAGTGCAAAGACTACTTCGGCGAGGTGGAAAGAACTTTGAAGGAAGTTGGGAGGAAGAAGTACCTTGTCCCCCTCTACAGTGCTCTTGTGGAAGGCAATGGAAAGGAGGAAGAGAAGATTTTGGCGAAACAGGTGTTTGCAGCCGCTCGCGAGACTTATCACCCTATAGCTCAGAGCGTTATCGAGACAATTTTTAACAAGCACTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006518 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009987 GO:0016787 GO:0016801 GO:0016803 GO:0019538 GO:0033218 GO:0034641 GO:0042277 GO:0043167 GO:0043169 GO:0043170 GO:0043171 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0070006 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00590 ko01100 map00590 map01100

Pfam Domains

Protein Families

Leuk-A4-hydro_C Peptidase_M1

Protein Analysis

252

Amino Acids

29.04

Weight (kDa)

4.97

Isoelectric Point (pI)

33.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M1	PF01433	17 - 78	2.5e-11	Peptidase family M1 domain
Leuk-A4-hydro_C	PF09127	133 - 246	6.2e-24	Leukotriene A4 hydrolase, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029327)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g17470
rosa_multiflora	Rmu_co8341681.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	281
AccBSI	CCGCTC	1 cut(s)	692
AccII	CGCG	2 cut(s)	478, 696
AciI	CCGC	2 cut(s)	380, 690
AcoI	YGGCCR	1 cut(s)	534
AcsI	RAATTY	1 cut(s)	353
AcuI	CTGAAG	3 cut(s)	102, 182, 466
AfaI	GTAC	1 cut(s)	608
AgeI	ACCGGT	2 cut(s)	284, 310
AgsI	TTSAA	6 cut(s)	13, 125, 184, 449, 472, 586
AjiI	CACGTC	1 cut(s)	511
AjnI	CCWGG	3 cut(s)	48, 238, 373
AjuI	GAANNNNNNNTTGG	4 cut(s)	117, 149, 345, 377
AluBI	AGCT	2 cut(s)	37, 716
AluI	AGCT	2 cut(s)	37, 716
Alw21I	GWGCWC	1 cut(s)	631
Alw26I	GTCTC	2 cut(s)	692, 725
AlwNI	CAGNNNCTG	1 cut(s)	112
AoxI	GGCC	2 cut(s)	140, 534
ApeKI	GCWGC	1 cut(s)	686
ApoI	RAATTY	1 cut(s)	353
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
AsiGI	ACCGGT	2 cut(s)	284, 310
AspLEI	GCGC	2 cut(s)	120, 480
AsuHPI	GGTGA	2 cut(s)	529, 698
BaeGI	GKGCMC	1 cut(s)	284
BalI	TGGCCA	1 cut(s)	536
BanI	GGYRCC	1 cut(s)	281
Bbv12I	GWGCWC	1 cut(s)	631
BbvI	GCAGC	1 cut(s)	698
BciT130I	CCWGG	3 cut(s)	50, 240, 375
BciVI	GTATCC	1 cut(s)	299
BcoDI	GTCTC	2 cut(s)	692, 725
BfmI	CTRYAG	2 cut(s)	622, 711
BfuI	GTATCC	1 cut(s)	299
BisI	GCNGC	2 cut(s)	687, 690
BlsI	GCNGC	2 cut(s)	688, 691
Bme1390I	CCNGG	3 cut(s)	50, 240, 375
BmgBI	CACGTC	1 cut(s)	511
BmiI	GGNNCC	1 cut(s)	283
BmrFI	CCNGG	3 cut(s)	50, 240, 375
BmsI	GCATC	3 cut(s)	289, 360, 551
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
BpmI	CTGGAG	1 cut(s)	418
BsaJI	CCNNGG	2 cut(s)	342, 374
BsaWI	WCCGGW	2 cut(s)	284, 310
Bse118I	RCCGGY	2 cut(s)	284, 310
Bse1I	ACTGG	2 cut(s)	106, 401
Bse3DI	GCAATG	3 cut(s)	171, 537, 649
BseBI	CCWGG	3 cut(s)	50, 240, 375
BseDI	CCNNGG	2 cut(s)	342, 374
BseGI	GGATG	3 cut(s)	375, 388, 542
BseMI	GCAATG	3 cut(s)	171, 537, 649
BseMII	CTCAG	2 cut(s)	267, 731
BseNI	ACTGG	2 cut(s)	106, 401
BseSI	GKGCMC	1 cut(s)	284
BseXI	GCAGC	1 cut(s)	698
Bsh1236I	CGCG	2 cut(s)	478, 696
BshFI	GGCC	2 cut(s)	142, 536
BshNI	GGYRCC	1 cut(s)	281
BshTI	ACCGGT	2 cut(s)	284, 310
BsiHKAI	GWGCWC	1 cut(s)	631
BsiSI	CCGG	2 cut(s)	285, 311
BslFI	GGGAC	1 cut(s)	599
BsmAI	GTCTC	2 cut(s)	692, 725
BsmFI	GGGAC	1 cut(s)	599
BsnI	GGCC	2 cut(s)	142, 536
Bsp1286I	GDGCHC	2 cut(s)	284, 631
Bsp19I	CCATGG	1 cut(s)	342
Bsp68I	TCGCGA	1 cut(s)	696
BspACI	CCGC	2 cut(s)	380, 690
BspANI	GGCC	2 cut(s)	142, 536
BspCNI	CTCAG	2 cut(s)	268, 730
BspFNI	CGCG	2 cut(s)	478, 696
BspLI	GGNNCC	1 cut(s)	283
BspT107I	GGYRCC	1 cut(s)	281
BsrBI	CCGCTC	1 cut(s)	692
BsrDI	GCAATG	3 cut(s)	171, 537, 649
BsrFI	RCCGGY	2 cut(s)	284, 310
BsrI	ACTGG	2 cut(s)	106, 401
BssAI	RCCGGY	2 cut(s)	284, 310
BssECI	CCNNGG	2 cut(s)	342, 374
BssT1I	CCWWGG	1 cut(s)	342
Bst2UI	CCWGG	3 cut(s)	50, 240, 375
Bst4CI	ACNGT	1 cut(s)	626
Bst6I	CTCTTC	1 cut(s)	651
BstC8I	GCNNGC	3 cut(s)	144, 534, 694
BstDEI	CTNAG	3 cut(s)	262, 276, 717
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	3 cut(s)	375, 388, 542
BstFNI	CGCG	2 cut(s)	478, 696
BstHHI	GCGC	2 cut(s)	120, 480
BstMAI	GTCTC	2 cut(s)	692, 725
BstNI	CCWGG	3 cut(s)	50, 240, 375
BstSCI	CCNGG	3 cut(s)	48, 238, 373
BstSFI	CTRYAG	2 cut(s)	622, 711
BstSLI	GKGCMC	1 cut(s)	284
BstUI	CGCG	2 cut(s)	478, 696
BstV1I	GCAGC	1 cut(s)	698
BsuI	GTATCC	1 cut(s)	299
BsuRI	GGCC	2 cut(s)	142, 536
BtgI	CCRYGG	1 cut(s)	342
BtrI	CACGTC	1 cut(s)	511
BtsCI	GGATG	3 cut(s)	375, 388, 542
BtsI	GCAGTG	1 cut(s)	748
BtsIMutI	CAGTG	2 cut(s)	631, 748
BtuMI	TCGCGA	1 cut(s)	696
Cac8I	GCNNGC	3 cut(s)	144, 534, 694
CaiI	CAGNNNCTG	1 cut(s)	112
CfoI	GCGC	2 cut(s)	120, 480
Cfr10I	RCCGGY	2 cut(s)	284, 310
Csp6I	GTAC	1 cut(s)	607
CspAI	ACCGGT	2 cut(s)	284, 310
CviAII	CATG	1 cut(s)	343
CviJI	RGCY	5 cut(s)	37, 142, 536, 689, 716
CviKI_1	RGCY	5 cut(s)	37, 142, 536, 689, 716
CviQI	GTAC	1 cut(s)	607
DdeI	CTNAG	3 cut(s)	262, 276, 717
EaeI	YGGCCR	1 cut(s)	534
Eam1104I	CTCTTC	1 cut(s)	651
EarI	CTCTTC	1 cut(s)	651
EciI	GGCGGA	1 cut(s)	395
Eco130I	CCWWGG	1 cut(s)	342
Eco147I	AGGCCT	1 cut(s)	142
Eco57I	CTGAAG	3 cut(s)	102, 182, 466
EcoRII	CCWGG	3 cut(s)	48, 238, 373
EcoT14I	CCWWGG	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	1 cut(s)	346
FaiI	YATR	8 cut(s)	91, 306, 323, 325, 327, 344, 507, 713
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	1 cut(s)	599
FatI	CATG	1 cut(s)	342
Fnu4HI	GCNGC	2 cut(s)	687, 690
FokI	GGATG	3 cut(s)	382, 395, 529
Fsp4HI	GCNGC	2 cut(s)	687, 690
GlaI	GCGC	2 cut(s)	119, 479
GluI	GCNGC	2 cut(s)	687, 690
GsuI	CTGGAG	1 cut(s)	418
HaeIII	GGCC	2 cut(s)	142, 536
HapII	CCGG	2 cut(s)	285, 311
HhaI	GCGC	2 cut(s)	120, 480
Hin1II	CATG	1 cut(s)	346
Hin6I	GCGC	2 cut(s)	118, 478
HinP1I	GCGC	2 cut(s)	118, 478
HincII	GTYRAC	2 cut(s)	61, 259
HindII	GTYRAC	2 cut(s)	61, 259
HinfI	GANTC	1 cut(s)	494
HpaII	CCGG	2 cut(s)	285, 311
HphI	GGTGA	2 cut(s)	529, 698
Hpy166II	GTNNAC	4 cut(s)	30, 61, 259, 273
Hpy188I	TCNGA	5 cut(s)	82, 162, 225, 493, 720
Hpy188III	TCNNGA	5 cut(s)	215, 296, 498, 695, 730
Hpy8I	GTNNAC	4 cut(s)	30, 61, 259, 273
HpyAV	CCTTC	6 cut(s)	47, 132, 190, 508, 580, 632
HpyCH4III	ACNGT	1 cut(s)	626
HpyCH4IV	ACGT	2 cut(s)	127, 510
HpyCH4V	TGCA	5 cut(s)	146, 329, 542, 552, 686
HpyF3I	CTNAG	3 cut(s)	262, 276, 717
HpySE526I	ACGT	2 cut(s)	127, 510
Hsp92II	CATG	1 cut(s)	346
HspAI	GCGC	2 cut(s)	118, 478
Lsp1109I	GCAGC	1 cut(s)	698
LweI	GCATC	3 cut(s)	289, 360, 551
MaeII	ACGT	2 cut(s)	127, 510
MaeIII	GTNAC	1 cut(s)	517
MbiI	CCGCTC	1 cut(s)	692
MboII	GAAGA	4 cut(s)	175, 613, 668, 673
MfeI	CAATTG	1 cut(s)	195
MhlI	GDGCHC	2 cut(s)	284, 631
MlsI	TGGCCA	1 cut(s)	536
MluCI	AATT	3 cut(s)	195, 353, 735
MluNI	TGGCCA	1 cut(s)	536
MmeI	TCCRAC	1 cut(s)	115
MnlI	CCTC	9 cut(s)	247, 271, 303, 395, 443, 562, 591, 629, 646
Mox20I	TGGCCA	1 cut(s)	536
MscI	TGGCCA	1 cut(s)	536
MseI	TTAA	2 cut(s)	357, 741
MslI	CAYNNNNRTG	1 cut(s)	547
Msp20I	TGGCCA	1 cut(s)	536
MspI	CCGG	2 cut(s)	285, 311
MspR9I	CCNGG	3 cut(s)	50, 240, 375
MunI	CAATTG	1 cut(s)	195
MvaI	CCWGG	3 cut(s)	50, 240, 375
MvnI	CGCG	2 cut(s)	478, 696
NcoI	CCATGG	1 cut(s)	342
NlaIII	CATG	1 cut(s)	346
NlaIV	GGNNCC	1 cut(s)	283
NmuCI	GTSAC	1 cut(s)	517
NruI	TCGCGA	1 cut(s)	696
PceI	AGGCCT	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	494
PinAI	ACCGGT	2 cut(s)	284, 310
PkrI	GCNGC	2 cut(s)	688, 691
Psp6I	CCWGG	3 cut(s)	48, 238, 373
PspGI	CCWGG	3 cut(s)	48, 238, 373
PspN4I	GGNNCC	1 cut(s)	283
PstNI	CAGNNNCTG	1 cut(s)	112
RruI	TCGCGA	1 cut(s)	696
RsaI	GTAC	1 cut(s)	608
RsaNI	GTAC	1 cut(s)	607
RseI	CAYNNNNRTG	1 cut(s)	547
SaqAI	TTAA	2 cut(s)	357, 741
SatI	GCNGC	2 cut(s)	687, 690
ScrFI	CCNGG	3 cut(s)	50, 240, 375
SduI	GDGCHC	2 cut(s)	284, 631
SfaNI	GCATC	3 cut(s)	289, 360, 551
SfcI	CTRYAG	2 cut(s)	622, 711
SmiMI	CAYNNNNRTG	1 cut(s)	547
Sse9I	AATT	3 cut(s)	195, 353, 735
SseBI	AGGCCT	1 cut(s)	142
SsiI	CCGC	2 cut(s)	380, 690
StuI	AGGCCT	1 cut(s)	142
StyD4I	CCNGG	3 cut(s)	48, 238, 373
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	1 cut(s)	626
TaiI	ACGT	2 cut(s)	130, 513
TaqI	TCGA	3 cut(s)	216, 497, 729
TasI	AATT	3 cut(s)	195, 353, 735
TauI	GCSGC	1 cut(s)	692
TfiI	GAWTC	1 cut(s)	494
Tru1I	TTAA	2 cut(s)	357, 741
Tru9I	TTAA	2 cut(s)	357, 741
TscAI	CASTG	2 cut(s)	631, 755
TseFI	GTSAC	1 cut(s)	517
TseI	GCWGC	1 cut(s)	686
Tsp45I	GTSAC	1 cut(s)	517
TspDTI	ATGAA	3 cut(s)	321, 366, 399
TspRI	CASTG	2 cut(s)	631, 755
XapI	RAATTY	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.