Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8341681.1

Orthogroup ID

OG0029327

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 818

Gene Structure 818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8341681.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atggagaggttcaaggataacatggagttcacaaagctgaaaaccaatcaggaaggagtggacccagatgatgtgtattctgaagttccatatgaaaaaggtttccagtttctgtggcgcattgaacgtcaggttggaaggcctgcatttgatgaatttacaaagaagtatattgccaccttcaagttcaaatcaattgataccgaaacatttctcgaatttctgaaagcaaacctacctggaatagagaaagagattgacttgattctgtggactgagggcactggtatccctcctgatgcctatgaaccagtttccagcatctatacaaaaattatattgatggcaaatgaatttaagcttggtaggatgccgagggaggatgaagttgctgactggggaggaatggagtgggagctctacttggagaacctgcccaaatctattgaagcttcacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006518 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009987 GO:0016787 GO:0016801 GO:0016803 GO:0019538 GO:0033218 GO:0034641 GO:0042277 GO:0043167 GO:0043169 GO:0043170 GO:0043171 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0070006 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00590 ko01100 map00590 map01100

Pfam Domains

Protein Families

Leuk-A4-hydro_C Peptidase_M1

Protein Analysis

153

Amino Acids

17.95

Weight (kDa)

4.57

Isoelectric Point (pI)

31.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029327)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g17470
rosa_multiflora	Rmu_co8341681.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	441
AcsI	RAATTY	3 cut(s)	155, 218, 353
AcuI	CTGAAG	1 cut(s)	102
AgsI	TTSAA	5 cut(s)	13, 125, 184, 190, 449
AjnI	CCWGG	1 cut(s)	238
AjuI	GAANNNNNNNTTGG	4 cut(s)	117, 149, 345, 377
AluBI	AGCT	4 cut(s)	37, 361, 418, 452
AluI	AGCT	4 cut(s)	37, 361, 418, 452
Alw21I	GWGCWC	1 cut(s)	420
AlwNI	CAGNNNCTG	1 cut(s)	112
AoxI	GGCC	1 cut(s)	140
ApoI	RAATTY	3 cut(s)	155, 218, 353
Asp700I	GAANNNNTTC	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	61
BaeGI	GKGCMC	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	420
BccI	CCATC	1 cut(s)	337
BciT130I	CCWGG	1 cut(s)	240
BciVI	GTATCC	1 cut(s)	299
BfuAI	ACCTGC	1 cut(s)	441
BfuI	GTATCC	1 cut(s)	299
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	63
BmrFI	CCNGG	1 cut(s)	240
BmrI	ACTGGG	1 cut(s)	406
BmsI	GCATC	3 cut(s)	289, 330, 360
BmuI	ACTGGG	1 cut(s)	406
BsaJI	CCNNGG	1 cut(s)	374
Bse1I	ACTGG	4 cut(s)	106, 289, 311, 401
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	374
BseGI	GGATG	2 cut(s)	375, 388
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	4 cut(s)	106, 289, 311, 401
BseSI	GKGCMC	1 cut(s)	284
BshFI	GGCC	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	420
BsnI	GGCC	1 cut(s)	142
Bsp1286I	GDGCHC	2 cut(s)	284, 420
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	63
BspMI	ACCTGC	1 cut(s)	441
BsrI	ACTGG	4 cut(s)	106, 289, 311, 401
BssECI	CCNNGG	1 cut(s)	374
Bst2UI	CCWGG	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	1 cut(s)	276
BstF5I	GGATG	2 cut(s)	375, 388
BstHHI	GCGC	1 cut(s)	120
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	238
BstSLI	GKGCMC	1 cut(s)	284
BsuI	GTATCC	1 cut(s)	299
BsuRI	GGCC	1 cut(s)	142
BtsCI	GGATG	2 cut(s)	375, 388
BtsIMutI	CAGTG	1 cut(s)	282
BveI	ACCTGC	1 cut(s)	441
Cac8I	GCNNGC	1 cut(s)	144
CaiI	CAGNNNCTG	1 cut(s)	112
CfoI	GCGC	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	61
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	5 cut(s)	37, 142, 361, 418, 452
CviKI_1	RGCY	5 cut(s)	37, 142, 361, 418, 452
DdeI	CTNAG	1 cut(s)	276
Ecl136II	GAGCTC	1 cut(s)	418
Eco147I	AGGCCT	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	61
Eco53kI	GAGCTC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	102
EcoICRI	GAGCTC	1 cut(s)	418
EcoRII	CCWGG	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	420
FaeI	CATG	1 cut(s)	25
FaiI	YATR	7 cut(s)	23, 91, 93, 171, 306, 327, 338
FatI	CATG	1 cut(s)	21
FauNDI	CATATG	1 cut(s)	91
FokI	GGATG	2 cut(s)	382, 395
FriOI	GRGCYC	1 cut(s)	420
GlaI	GCGC	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	142
HhaI	GCGC	1 cut(s)	120
Hin1II	CATG	1 cut(s)	25
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HindIII	AAGCTT	2 cut(s)	359, 450
HinfI	GANTC	1 cut(s)	265
Hpy166II	GTNNAC	3 cut(s)	30, 61, 273
Hpy188I	TCNGA	2 cut(s)	82, 225
Hpy188III	TCNNGA	3 cut(s)	50, 215, 296
Hpy8I	GTNNAC	3 cut(s)	30, 61, 273
HpyAV	CCTTC	3 cut(s)	47, 132, 190
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	1 cut(s)	146
HpyF3I	CTNAG	1 cut(s)	276
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	1 cut(s)	25
HspAI	GCGC	1 cut(s)	118
LmnI	GCTCC	1 cut(s)	415
LweI	GCATC	3 cut(s)	289, 330, 360
MaeII	ACGT	1 cut(s)	127
MfeI	CAATTG	1 cut(s)	195
MhlI	GDGCHC	2 cut(s)	284, 420
MluCI	AATT	5 cut(s)	155, 195, 218, 333, 353
MmeI	TCCRAC	1 cut(s)	115
MnlI	CCTC	5 cut(s)	271, 303, 369, 373, 395
MroXI	GAANNNNTTC	1 cut(s)	210
MseI	TTAA	1 cut(s)	357
MspR9I	CCNGG	1 cut(s)	240
MunI	CAATTG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	240
NdeI	CATATG	1 cut(s)	91
NlaIII	CATG	1 cut(s)	25
NlaIV	GGNNCC	1 cut(s)	63
NmeAIII	GCCGAG	1 cut(s)	399
PceI	AGGCCT	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	265
Psp124BI	GAGCTC	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	61
PstNI	CAGNNNCTG	1 cut(s)	112
SacI	GAGCTC	1 cut(s)	420
SaqAI	TTAA	1 cut(s)	357
Sau96I	GGNCC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	2 cut(s)	284, 420
SfaNI	GCATC	3 cut(s)	289, 330, 360
SinI	GGWCC	1 cut(s)	61
Sse9I	AATT	5 cut(s)	155, 195, 218, 333, 353
SseBI	AGGCCT	1 cut(s)	142
SstI	GAGCTC	1 cut(s)	420
StuI	AGGCCT	1 cut(s)	142
StyD4I	CCNGG	1 cut(s)	238
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	1 cut(s)	216
TasI	AATT	5 cut(s)	155, 195, 218, 333, 353
TfiI	GAWTC	1 cut(s)	265
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	1 cut(s)	289
TspDTI	ATGAA	5 cut(s)	108, 168, 321, 366, 399
TspRI	CASTG	1 cut(s)	289
VpaK11BI	GGWCC	1 cut(s)	61
XapI	RAATTY	3 cut(s)	155, 218, 353
XmnI	GAANNNNTTC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.