pycom07g18790

Belongs to the actin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0028881
Physical Location & Seq
Reverse (-)
21153507 .. 21154226
720 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 630 bp
ATGCGCCTTTTGACAACAGCAGCTTTTGATCACGGCAAGGGTGAGGATACTTTCGGTGCCAAAGATGAAGATTGGCAACTGTACAAACTCATGAGCAAAGATAACAATGATGATGACGGGGGACCAGATGTGGATGAAGCAGAGCTAGCACATCTATCTTCGAGGCTCAAGGAAGTAGACCCAACATTTGTTCCCAAACCAGATAATGCAAACCCTCAATCTGTTGAAGCACCACGGTTTCGTCTTCTTACCCAGGAAGATTTTCAAATTGTTTTCGACATTGAAAGGTTCAGATGCCCAGAGATCTTATTTCATCCCAACTGGATTGGGATCAACCAGGCAGGCTTAGATGAGATGACTGGGGTGTCACTGAGGAGGCTGCCGACTAAGTTCCAAGAGCTGGAGGAGGGGCTAACCAGTTCAATATTTATGACTGTTGGGAGTAGTCTTTTTCCTGGCATGAGCGAGCGCTTGGAGGCTGGAATCCGGATGAAGCTGCCATGTGGTTCTCCCATAAGGATAGCCAAGGCATTGGATCCGATATTAGATGCATGGCGCGGGGCTTCCGCTTACGCTGCCGAGTCCCATTTCCCGACACAAACTTTCAGCAAGGAAGAGTATTATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Actin

Protein Analysis

210

Amino Acids

23.55

Weight (kDa)

4.72

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Actin PF00022 74 - 209 4.3e-20 Actin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028881)

Species Orthologous Gene IDs
malus_domestica MD07G1200800.v1.1
pyrus_communis pycom07g18790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 364
AccB1I GGYRCC 1 cut(s) 56
AccB7I CCANNNNNTGG 1 cut(s) 400
AccI GTMKAC 1 cut(s) 177
AccII CGCG 1 cut(s) 558
AccIII TCCGGA 1 cut(s) 486
AciI CCGC 2 cut(s) 558, 567
AclWI GGATC 3 cut(s) 338, 530, 543
AfaI GTAC 1 cut(s) 83
AfeI AGCGCT 1 cut(s) 470
AfiI CCNNNNNNNGG 1 cut(s) 400
AgsI TTSAA 4 cut(s) 227, 266, 284, 423
AjnI CCWGG 3 cut(s) 252, 336, 454
AluBI AGCT 4 cut(s) 23, 145, 400, 496
AluI AGCT 4 cut(s) 23, 145, 400, 496
AlwI GGATC 3 cut(s) 338, 530, 543
Aor13HI TCCGGA 1 cut(s) 486
Aor51HI AGCGCT 1 cut(s) 470
ApeKI GCWGC 4 cut(s) 20, 379, 496, 575
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
Asp700I GAANNNNTTC 1 cut(s) 261
AspLEI GCGC 3 cut(s) 6, 471, 558
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 53
AsuNHI GCTAGC 1 cut(s) 145
AvaII GGWCC 1 cut(s) 122
BamHI GGATCC 1 cut(s) 535
BanI GGYRCC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 236
BbvI GCAGC 4 cut(s) 32, 366, 483, 562
BceAI ACGGC 1 cut(s) 49
BciT130I CCWGG 3 cut(s) 254, 338, 456
BciVI GTATCC 1 cut(s) 40
BclI TGATCA 1 cut(s) 28
BfaI CTAG 1 cut(s) 146
BfoI RGCGCY 1 cut(s) 472
BfuI GTATCC 1 cut(s) 40
BglII AGATCT 1 cut(s) 303
BisI GCNGC 4 cut(s) 21, 380, 497, 576
BlsI GCNGC 4 cut(s) 22, 381, 498, 577
Bme1390I CCNGG 3 cut(s) 254, 338, 456
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 3 cut(s) 58, 123, 537
BmrFI CCNGG 3 cut(s) 254, 338, 456
BmrI ACTGGG 1 cut(s) 369
BmsI GCATC 2 cut(s) 284, 538
BmtI GCTAGC 1 cut(s) 149
BmuI ACTGGG 1 cut(s) 369
BpiI GAAGAC 1 cut(s) 236
BpmI CTGGAG 1 cut(s) 422
BpuEI CTTGAG 1 cut(s) 152
BsaBI GATNNNNATC 1 cut(s) 329
BsaJI CCNNGG 3 cut(s) 233, 252, 525
BsaWI WCCGGW 1 cut(s) 486
Bsc4I CCNNNNNNNGG 1 cut(s) 400
Bse1I ACTGG 3 cut(s) 326, 364, 417
Bse8I GATNNNNATC 1 cut(s) 329
BseAI TCCGGA 1 cut(s) 486
BseBI CCWGG 3 cut(s) 254, 338, 456
BseDI CCNNGG 3 cut(s) 233, 252, 525
BseGI GGATG 3 cut(s) 139, 313, 495
BseJI GATNNNNATC 1 cut(s) 329
BseLI CCNNNNNNNGG 1 cut(s) 400
BseMII CTCAG 1 cut(s) 362
BseNI ACTGG 3 cut(s) 326, 364, 417
BseRI GAGGAG 2 cut(s) 388, 419
BseXI GCAGC 4 cut(s) 32, 366, 483, 562
Bsh1236I CGCG 1 cut(s) 558
BshNI GGYRCC 1 cut(s) 56
BsiSI CCGG 1 cut(s) 487
BslFI GGGAC 2 cut(s) 135, 568
BslI CCNNNNNNNGG 1 cut(s) 400
BsmFI GGGAC 2 cut(s) 135, 568
Bsp13I TCCGGA 1 cut(s) 486
Bsp1407I TGTACA 1 cut(s) 81
Bsp143I GATC 4 cut(s) 28, 303, 330, 535
BspACI CCGC 2 cut(s) 558, 567
BspCNI CTCAG 1 cut(s) 363
BspEI TCCGGA 1 cut(s) 486
BspFNI CGCG 1 cut(s) 558
BspHI TCATGA 1 cut(s) 90
BspLI GGNNCC 3 cut(s) 58, 123, 537
BspOI GCTAGC 1 cut(s) 149
BspPI GGATC 3 cut(s) 338, 530, 543
BspT107I GGYRCC 1 cut(s) 56
BsrGI TGTACA 1 cut(s) 81
BsrI ACTGG 3 cut(s) 326, 364, 417
BssECI CCNNGG 3 cut(s) 233, 252, 525
BssMI GATC 4 cut(s) 28, 303, 330, 535
BssT1I CCWWGG 1 cut(s) 525
Bst2UI CCWGG 3 cut(s) 254, 338, 456
Bst4CI ACNGT 3 cut(s) 81, 237, 436
Bst6I CTCTTC 1 cut(s) 609
BstAUI TGTACA 1 cut(s) 81
BstC8I GCNNGC 3 cut(s) 147, 343, 467
BstDEI CTNAG 3 cut(s) 346, 371, 387
BstDSI CCRYGG 1 cut(s) 233
BstF5I GGATG 3 cut(s) 139, 313, 495
BstFNI CGCG 1 cut(s) 558
BstH2I RGCGCY 1 cut(s) 472
BstHHI GCGC 3 cut(s) 6, 471, 558
BstKTI GATC 4 cut(s) 31, 306, 333, 538
BstMBI GATC 4 cut(s) 28, 303, 330, 535
BstMWI GCNNNNNNNGC 2 cut(s) 146, 575
BstNI CCWGG 3 cut(s) 254, 338, 456
BstSCI CCNGG 3 cut(s) 252, 336, 454
BstUI CGCG 1 cut(s) 558
BstV1I GCAGC 4 cut(s) 32, 366, 483, 562
BstV2I GAAGAC 1 cut(s) 236
BstX2I RGATCY 2 cut(s) 303, 535
BstXI CCANNNNNNTGG 1 cut(s) 532
BstYI RGATCY 2 cut(s) 303, 535
BsuI GTATCC 1 cut(s) 40
BtgI CCRYGG 1 cut(s) 233
BtsCI GGATG 3 cut(s) 139, 313, 495
BtsIMutI CAGTG 1 cut(s) 368
Cac8I GCNNGC 3 cut(s) 147, 343, 467
CciI TCATGA 1 cut(s) 90
CfoI GCGC 3 cut(s) 6, 471, 558
Cfr13I GGNCC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 82
CviAII CATG 4 cut(s) 91, 460, 501, 552
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 3 cut(s) 346, 371, 387
DpnI GATC 4 cut(s) 30, 305, 332, 537
DpnII GATC 4 cut(s) 28, 303, 330, 535
DrdI GACNNNNNNGTC 1 cut(s) 364
DseDI GACNNNNNNGTC 1 cut(s) 364
Eam1104I CTCTTC 1 cut(s) 609
EarI CTCTTC 1 cut(s) 609
Eco130I CCWWGG 1 cut(s) 525
Eco47I GGWCC 1 cut(s) 122
Eco47III AGCGCT 1 cut(s) 470
EcoRII CCWGG 3 cut(s) 252, 336, 454
EcoT14I CCWWGG 1 cut(s) 525
EcoT22I ATGCAT 1 cut(s) 553
ErhI CCWWGG 1 cut(s) 525
FaeI CATG 4 cut(s) 94, 463, 504, 555
FaiI YATR 7 cut(s) 92, 431, 461, 502, 515, 553, 624
FaqI GGGAC 2 cut(s) 135, 568
FatI CATG 4 cut(s) 90, 459, 500, 551
FauI CCCGC 1 cut(s) 551
FbaI TGATCA 1 cut(s) 28
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 4 cut(s) 21, 380, 497, 576
FokI GGATG 3 cut(s) 146, 300, 502
Fsp4HI GCNGC 4 cut(s) 21, 380, 497, 576
FspBI CTAG 1 cut(s) 146
GlaI GCGC 3 cut(s) 5, 470, 557
GluI GCNGC 4 cut(s) 21, 380, 497, 576
GsuI CTGGAG 1 cut(s) 422
HaeII RGCGCY 1 cut(s) 472
HapII CCGG 1 cut(s) 487
HhaI GCGC 3 cut(s) 6, 471, 558
Hin1II CATG 4 cut(s) 94, 463, 504, 555
Hin6I GCGC 3 cut(s) 4, 469, 556
HinP1I GCGC 3 cut(s) 4, 469, 556
HinfI GANTC 2 cut(s) 483, 581
HpaII CCGG 1 cut(s) 487
HphI GGTGA 1 cut(s) 53
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 2 cut(s) 293, 540
Hpy188III TCNNGA 3 cut(s) 91, 487, 592
Hpy8I GTNNAC 1 cut(s) 178
HpyCH4III ACNGT 3 cut(s) 81, 237, 436
HpyCH4V TGCA 2 cut(s) 209, 551
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 575
HpyF3I CTNAG 3 cut(s) 346, 371, 387
Hsp92II CATG 4 cut(s) 94, 463, 504, 555
HspAI GCGC 3 cut(s) 4, 469, 556
Kpn2I TCCGGA 1 cut(s) 486
Ksp22I TGATCA 1 cut(s) 28
Kzo9I GATC 4 cut(s) 28, 303, 330, 535
Lsp1109I GCAGC 4 cut(s) 32, 366, 483, 562
LweI GCATC 2 cut(s) 284, 538
MaeI CTAG 1 cut(s) 146
MaeIII GTNAC 1 cut(s) 366
MalI GATC 4 cut(s) 30, 305, 332, 537
MboI GATC 4 cut(s) 28, 303, 330, 535
MboII GAAGA 5 cut(s) 80, 150, 236, 269, 626
MflI RGATCY 2 cut(s) 303, 535
MluCI AATT 1 cut(s) 267
MlyI GAGTC 1 cut(s) 590
MnlI CCTC 8 cut(s) 37, 156, 225, 366, 369, 397, 400, 469
Mph1103I ATGCAT 1 cut(s) 553
MroI TCCGGA 1 cut(s) 486
MroXI GAANNNNTTC 1 cut(s) 261
MspI CCGG 1 cut(s) 487
MspR9I CCNGG 3 cut(s) 254, 338, 456
MvaI CCWGG 3 cut(s) 254, 338, 456
MvnI CGCG 1 cut(s) 558
MwoI GCNNNNNNNGC 2 cut(s) 146, 575
NdeII GATC 4 cut(s) 28, 303, 330, 535
NheI GCTAGC 1 cut(s) 145
NlaIII CATG 4 cut(s) 94, 463, 504, 555
NlaIV GGNNCC 3 cut(s) 58, 123, 537
NmeAIII GCCGAG 1 cut(s) 604
NmuCI GTSAC 1 cut(s) 366
NsiI ATGCAT 1 cut(s) 553
PagI TCATGA 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 1 cut(s) 483
PflMI CCANNNNNTGG 1 cut(s) 400
PkrI GCNGC 4 cut(s) 22, 381, 498, 577
PleI GAGTC 1 cut(s) 589
PpsI GAGTC 1 cut(s) 589
Psp6I CCWGG 3 cut(s) 252, 336, 454
PspGI CCWGG 3 cut(s) 252, 336, 454
PspN4I GGNNCC 3 cut(s) 58, 123, 537
PspPI GGNCC 1 cut(s) 122
PsuI RGATCY 2 cut(s) 303, 535
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
SatI GCNGC 4 cut(s) 21, 380, 497, 576
Sau3AI GATC 4 cut(s) 28, 303, 330, 535
Sau96I GGNCC 1 cut(s) 122
SchI GAGTC 1 cut(s) 590
ScrFI CCNGG 3 cut(s) 254, 338, 456
SetI ASST 5 cut(s) 25, 147, 290, 402, 498
SfaNI GCATC 2 cut(s) 284, 538
SinI GGWCC 1 cut(s) 122
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 1 cut(s) 267
SsiI CCGC 2 cut(s) 558, 567
SspI AATATT 1 cut(s) 426
SspMI CTAG 1 cut(s) 146
StyD4I CCNGG 3 cut(s) 252, 336, 454
StyI CCWWGG 1 cut(s) 525
TaaI ACNGT 3 cut(s) 81, 237, 436
TaqI TCGA 2 cut(s) 161, 276
TasI AATT 1 cut(s) 267
TatI WGTACW 1 cut(s) 81
TfiI GAWTC 1 cut(s) 483
TscAI CASTG 1 cut(s) 375
TseFI GTSAC 1 cut(s) 366
TseI GCWGC 4 cut(s) 20, 379, 496, 575
Tsp45I GTSAC 1 cut(s) 366
TspDTI ATGAA 4 cut(s) 81, 150, 302, 506
TspRI CASTG 1 cut(s) 375
Van91I CCANNNNNTGG 1 cut(s) 400
VpaK11BI GGWCC 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 177
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 1 cut(s) 146
Zsp2I ATGCAT 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.