Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0029329

Physical Location & Seq

Genomic Coordinates Forward (+)

22145564 .. 22146504

Gene Structure 941 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGTCGGGGAAGACGAAGAAGGGCGAGGCGGGCAGTAGCATCGGCGGCGGCAGTAGTAACCACAGAGGAGAAAGCGTGGTGGTGGATTACGGCAAAAACAAAAGCTCCTGCGGTTATTGCAAATCCGGTGCTCGCACCAGTATCTCTCACGGTTTGTGGGCACATAGCATTACGATCAATGACTACCAAGATCTTCTTGACCGCGGTTGGAGATCGATCTGGTTGTTTTCTTTACAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004057 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009894 GO:0009987 GO:0010029 GO:0010033 GO:0010150 GO:0016598 GO:0016740 GO:0016746 GO:0016755 GO:0019216 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048580 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050832 GO:0050896 GO:0050994 GO:0051239 GO:0051603 GO:0051704 GO:0051707 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0097305 GO:0098542 GO:0099402 GO:0140096 GO:1900140 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATE_C ATE_N

Protein Analysis

81

Amino Acids

8.62

Weight (kDa)

9.34

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATE_N	PF04376	35 - 71	9.1e-06	Arginine-tRNA-protein transferase, N terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0029329)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g19920
rosa_samantha	Rh1DG355500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	204
AciI	CCGC	6 cut(s)	29, 45, 48, 111, 202, 204
AluBI	AGCT	1 cut(s)	105
AluI	AGCT	1 cut(s)	105
Alw21I	GWGCWC	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	133
BceAI	ACGGC	1 cut(s)	106
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BglII	AGATCT	1 cut(s)	190
BisI	GCNGC	2 cut(s)	46, 49
BlsI	GCNGC	2 cut(s)	47, 50
BmsI	GCATC	1 cut(s)	48
BpiI	GAAGAC	1 cut(s)	17
Bsa29I	ATCGAT	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	202
BsaWI	WCCGGW	1 cut(s)	125
BsaXI	ACNNNNNCTCC	4 cut(s)	60, 89, 90, 119
Bse1I	ACTGG	1 cut(s)	138
BseCI	ATCGAT	1 cut(s)	215
BseDI	CCNNGG	1 cut(s)	202
BseNI	ACTGG	1 cut(s)	138
BseRI	GAGGAG	1 cut(s)	81
BseSI	GKGCMC	1 cut(s)	163
Bsh1236I	CGCG	1 cut(s)	204
BshVI	ATCGAT	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	133
BsiSI	CCGG	1 cut(s)	126
Bsp1286I	GDGCHC	2 cut(s)	133, 163
Bsp143I	GATC	4 cut(s)	174, 190, 212, 216
BspACI	CCGC	6 cut(s)	29, 45, 48, 111, 202, 204
BspDI	ATCGAT	1 cut(s)	215
BspFNI	CGCG	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	138
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	4 cut(s)	174, 190, 212, 216
Bst4CI	ACNGT	1 cut(s)	152
BstC8I	GCNNGC	2 cut(s)	31, 133
BstDSI	CCRYGG	1 cut(s)	202
BstFNI	CGCG	1 cut(s)	204
BstKTI	GATC	4 cut(s)	177, 193, 215, 219
BstMBI	GATC	4 cut(s)	174, 190, 212, 216
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 45, 117
BstSLI	GKGCMC	1 cut(s)	163
BstUI	CGCG	1 cut(s)	204
BstV2I	GAAGAC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
Bsu15I	ATCGAT	1 cut(s)	215
BsuTUI	ATCGAT	1 cut(s)	215
BtgI	CCRYGG	1 cut(s)	202
Cac8I	GCNNGC	2 cut(s)	31, 133
Cfr42I	CCGCGG	1 cut(s)	205
ClaI	ATCGAT	1 cut(s)	215
CviJI	RGCY	1 cut(s)	105
CviKI_1	RGCY	1 cut(s)	105
DpnI	GATC	4 cut(s)	176, 192, 214, 218
DpnII	GATC	4 cut(s)	174, 190, 212, 216
FaiI	YATR	1 cut(s)	165
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FauI	CCCGC	1 cut(s)	22
Fnu4HI	GCNGC	2 cut(s)	46, 49
Fsp4HI	GCNGC	2 cut(s)	46, 49
GluI	GCNGC	2 cut(s)	46, 49
HapII	CCGG	1 cut(s)	126
HpaII	CCGG	1 cut(s)	126
Hpy188III	TCNNGA	1 cut(s)	197
HpyAV	CCTTC	1 cut(s)	13
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4V	TGCA	1 cut(s)	120
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 45, 117
KspI	CCGCGG	1 cut(s)	205
Kzo9I	GATC	4 cut(s)	174, 190, 212, 216
LmnI	GCTCC	1 cut(s)	110
LpnPI	CCDG	4 cut(s)	121, 139, 151, 205
LweI	GCATC	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	4 cut(s)	176, 192, 214, 218
MboI	GATC	4 cut(s)	174, 190, 212, 216
MboII	GAAGA	3 cut(s)	22, 28, 185
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	2 cut(s)	133, 163
MmeI	TCCRAC	1 cut(s)	188
MnlI	CCTC	2 cut(s)	19, 59
MspA1I	CMGCKG	1 cut(s)	204
MspI	CCGG	1 cut(s)	126
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	3 cut(s)	30, 45, 117
NdeII	GATC	4 cut(s)	174, 190, 212, 216
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PkrI	GCNGC	2 cut(s)	47, 50
PsuI	RGATCY	1 cut(s)	190
SacII	CCGCGG	1 cut(s)	205
SatI	GCNGC	2 cut(s)	46, 49
Sau3AI	GATC	4 cut(s)	174, 190, 212, 216
SduI	GDGCHC	2 cut(s)	133, 163
SetI	ASST	2 cut(s)	107, 242
SfaNI	GCATC	1 cut(s)	48
Sfr303I	CCGCGG	1 cut(s)	205
SgrBI	CCGCGG	1 cut(s)	205
SsiI	CCGC	6 cut(s)	29, 45, 48, 111, 202, 204
TaaI	ACNGT	1 cut(s)	152
TaqI	TCGA	1 cut(s)	215
TauI	GCSGC	2 cut(s)	48, 51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.