Rh1DG355500

Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
57911652 .. 57912197
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG355500.1

Sequence Viewer

Length: 219 bp
ATGGCAGGGAAGATGAAGAGGAGCGAGGCCAGCAGCAGCAGCCGAAGCAGCAGCAACAACAACAGTAACCACAGAGCCGAAACCGTCGTCGTCGATTACGGCAAGAACAAAAGCACCTGCGGCTACTGCAAATCCAAAGCTCGCACCAGCATCTCTCACGGTCTGTGGTCACAGAGCGTTACGATTAATGACTATCAAGATCTTCTTGACCGGGGTTAG

Protein Analysis

72

Amino Acids

7.89

Weight (kDa)

9.56

Isoelectric Point (pI)

57.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0029329)

Species Orthologous Gene IDs
pyrus_communis pycom07g19920
rosa_samantha Rh1DG355500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 125
Acc36I ACCTGC 1 cut(s) 125
AciI CCGC 1 cut(s) 120
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 5 cut(s) 33, 36, 39, 48, 51
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
AseI ATTAAT 1 cut(s) 186
AsuC2I CCSGG 1 cut(s) 212
BbvI GCAGC 5 cut(s) 45, 48, 51, 60, 63
BceAI ACGGC 1 cut(s) 115
BcnI CCSGG 1 cut(s) 212
BfuAI ACCTGC 1 cut(s) 125
BglII AGATCT 1 cut(s) 199
BisI GCNGC 6 cut(s) 34, 37, 40, 49, 52, 121
BlsI GCNGC 6 cut(s) 35, 38, 41, 50, 53, 122
Bme1390I CCNGG 1 cut(s) 212
BmrFI CCNGG 1 cut(s) 212
BmsI GCATC 1 cut(s) 159
BpuMI CCSGG 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 211
BseDI CCNNGG 1 cut(s) 211
BseRI GAGGAG 1 cut(s) 34
BseXI GCAGC 5 cut(s) 45, 48, 51, 60, 63
BshFI GGCC 1 cut(s) 29
BsiSI CCGG 1 cut(s) 211
BsnI GGCC 1 cut(s) 29
Bsp143I GATC 1 cut(s) 199
BspACI CCGC 1 cut(s) 120
BspANI GGCC 1 cut(s) 29
BspMI ACCTGC 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 211
BssMI GATC 1 cut(s) 199
Bst4CI ACNGT 3 cut(s) 65, 85, 161
Bst6I CTCTTC 1 cut(s) 11
BstC8I GCNNGC 2 cut(s) 31, 142
BstKTI GATC 1 cut(s) 202
BstMBI GATC 1 cut(s) 199
BstMWI GCNNNNNNNGC 6 cut(s) 30, 39, 45, 48, 120, 126
BstSCI CCNGG 1 cut(s) 210
BstV1I GCAGC 5 cut(s) 45, 48, 51, 60, 63
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BsuRI GGCC 1 cut(s) 29
BveI ACCTGC 1 cut(s) 125
Cac8I GCNNGC 2 cut(s) 31, 142
CviJI RGCY 5 cut(s) 29, 42, 77, 123, 140
CviKI_1 RGCY 5 cut(s) 29, 42, 77, 123, 140
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
FalI AAGNNNNNCTT 1 cut(s) 189
Fnu4HI GCNGC 6 cut(s) 34, 37, 40, 49, 52, 121
Fsp4HI GCNGC 6 cut(s) 34, 37, 40, 49, 52, 121
GluI GCNGC 6 cut(s) 34, 37, 40, 49, 52, 121
HaeIII GGCC 1 cut(s) 29
HapII CCGG 1 cut(s) 211
HpaII CCGG 1 cut(s) 211
Hpy188III TCNNGA 2 cut(s) 197, 206
Hpy99I CGWCG 3 cut(s) 89, 92, 95
HpyCH4III ACNGT 3 cut(s) 65, 85, 161
HpyCH4V TGCA 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 6 cut(s) 30, 39, 45, 48, 120, 126
Kzo9I GATC 1 cut(s) 199
LmnI GCTCC 1 cut(s) 21
LpnPI CCDG 3 cut(s) 43, 130, 160
Lsp1109I GCAGC 5 cut(s) 45, 48, 51, 60, 63
LweI GCATC 1 cut(s) 159
MaeIII GTNAC 3 cut(s) 65, 168, 178
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 3 cut(s) 22, 28, 194
MflI RGATCY 1 cut(s) 199
MnlI CCTC 2 cut(s) 12, 19
MseI TTAA 1 cut(s) 186
MspI CCGG 1 cut(s) 211
MspR9I CCNGG 1 cut(s) 212
MwoI GCNNNNNNNGC 6 cut(s) 30, 39, 45, 48, 120, 126
NciI CCSGG 1 cut(s) 212
NdeII GATC 1 cut(s) 199
NmuCI GTSAC 1 cut(s) 168
PaqCI CACCTGC 1 cut(s) 125
PkrI GCNGC 6 cut(s) 35, 38, 41, 50, 53, 122
PshBI ATTAAT 1 cut(s) 186
PsuI RGATCY 1 cut(s) 199
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 6 cut(s) 34, 37, 40, 49, 52, 121
Sau3AI GATC 1 cut(s) 199
ScrFI CCNGG 1 cut(s) 212
SetI ASST 2 cut(s) 119, 142
SfaNI GCATC 1 cut(s) 159
SgeI CNNG 9 cut(s) 18, 37, 42, 115, 129, 153, 159, 170, 209
SsiI CCGC 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 210
TaaI ACNGT 3 cut(s) 65, 85, 161
TaqI TCGA 1 cut(s) 93
TauI GCSGC 1 cut(s) 123
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TseFI GTSAC 1 cut(s) 168
TseI GCWGC 5 cut(s) 33, 36, 39, 48, 51
Tsp45I GTSAC 1 cut(s) 168
TspDTI ATGAA 1 cut(s) 29
VspI ATTAAT 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.