Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0028868

Physical Location & Seq

Genomic Coordinates Forward (+)

25645043 .. 25645577

Gene Structure 535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGATCAGAAGAGCAACCGAGTCCAGGACCGAGGTGTCACTCCTCGATCACAAGACTTCAATGCTTGGTACCTGGATGTCATTGAACAGGCGGAGCTCGACGATTACGTTCCCGTTCGTGGAACCATGGTCATACGTCCGTACGGTTACGCCGTTTGGGAAGCCATTCAGTTTATACCCTACTCTTTCTATAGAGAAAGAAGCCAGCCATGTTGAGGGTTTTAGTTCCGAATTAGCACTTGTGACAATAGGAAGAGGGAAGGAGCTCGAAGAGAAACTTGTCGTATGCATTTCCGTCAGTAAGTTGTGTTGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006433 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009553 GO:0009570 GO:0009791 GO:0009908 GO:0009987 GO:0010109 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0022414 GO:0031323 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0099402 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon ProRS-C_1 tRNA-synt_2b

Protein Analysis

106

Amino Acids

11.84

Weight (kDa)

8.54

Isoelectric Point (pI)

56.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028868)

Species	Orthologous Gene IDs
malus_domestica	MD07G1277600.v1.1
pyrus_communis	pycom07g25260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	34
Acc65I	GGTACC	1 cut(s)	68
AccB1I	GGYRCC	1 cut(s)	68
AciI	CCGC	1 cut(s)	91
AfaI	GTAC	2 cut(s)	70, 142
AfiI	CCNNNNNNNGG	3 cut(s)	24, 118, 214
AgsI	TTSAA	2 cut(s)	60, 85
AjnI	CCWGG	2 cut(s)	23, 71
AluBI	AGCT	2 cut(s)	96, 265
AluI	AGCT	2 cut(s)	96, 265
Alw21I	GWGCWC	2 cut(s)	98, 267
Asp700I	GAANNNNTTC	1 cut(s)	164
Asp718I	GGTACC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	27
AvaII	GGWCC	1 cut(s)	27
BanI	GGYRCC	1 cut(s)	68
BanII	GRGCYC	2 cut(s)	98, 267
Bbv12I	GWGCWC	2 cut(s)	98, 267
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	2 cut(s)	25, 73
BclI	TGATCA	1 cut(s)	3
BfmI	CTRYAG	1 cut(s)	189
Bme1390I	CCNGG	2 cut(s)	25, 73
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	2 cut(s)	70, 123
BmrFI	CCNGG	2 cut(s)	25, 73
BsaJI	CCNNGG	2 cut(s)	30, 125
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 118, 214
BseBI	CCWGG	2 cut(s)	25, 73
BseDI	CCNNGG	2 cut(s)	30, 125
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	3 cut(s)	24, 118, 214
BseRI	GAGGAG	1 cut(s)	32
BshNI	GGYRCC	1 cut(s)	68
BsiHKAI	GWGCWC	2 cut(s)	98, 267
BsiWI	CGTACG	1 cut(s)	140
BslI	CCNNNNNNNGG	3 cut(s)	24, 118, 214
Bsp1286I	GDGCHC	2 cut(s)	98, 267
Bsp143I	GATC	2 cut(s)	3, 46
Bsp19I	CCATGG	1 cut(s)	125
BspACI	CCGC	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	70, 123
BspQI	GCTCTTC	1 cut(s)	4
BspT107I	GGYRCC	1 cut(s)	68
BssECI	CCNNGG	2 cut(s)	30, 125
BssMI	GATC	2 cut(s)	3, 46
BssT1I	CCWWGG	1 cut(s)	125
Bst2UI	CCWGG	2 cut(s)	25, 73
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	3 cut(s)	4, 247, 264
BstC8I	GCNNGC	1 cut(s)	205
BstDSI	CCRYGG	1 cut(s)	125
BstF5I	GGATG	1 cut(s)	81
BstKTI	GATC	2 cut(s)	6, 49
BstMBI	GATC	2 cut(s)	3, 46
BstNI	CCWGG	2 cut(s)	25, 73
BstSCI	CCNGG	2 cut(s)	23, 71
BstSFI	CTRYAG	1 cut(s)	189
BtgI	CCRYGG	1 cut(s)	125
BtsCI	GGATG	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	27
Csp6I	GTAC	2 cut(s)	69, 141
CviAII	CATG	2 cut(s)	126, 209
CviJI	RGCY	5 cut(s)	96, 163, 203, 207, 265
CviKI_1	RGCY	5 cut(s)	96, 163, 203, 207, 265
CviQI	GTAC	2 cut(s)	69, 141
DpnI	GATC	2 cut(s)	5, 48
DpnII	GATC	2 cut(s)	3, 46
DrdI	GACNNNNNNGTC	1 cut(s)	34
DseDI	GACNNNNNNGTC	1 cut(s)	34
Eam1104I	CTCTTC	3 cut(s)	4, 247, 264
EarI	CTCTTC	3 cut(s)	4, 247, 264
EciI	GGCGGA	1 cut(s)	106
Ecl136II	GAGCTC	2 cut(s)	96, 265
Eco130I	CCWWGG	1 cut(s)	125
Eco24I	GRGCYC	2 cut(s)	98, 267
Eco47I	GGWCC	1 cut(s)	27
Eco53kI	GAGCTC	2 cut(s)	96, 265
EcoICRI	GAGCTC	2 cut(s)	96, 265
EcoRII	CCWGG	2 cut(s)	23, 71
EcoT14I	CCWWGG	1 cut(s)	125
EcoT22I	ATGCAT	1 cut(s)	290
EcoT38I	GRGCYC	2 cut(s)	98, 267
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	2 cut(s)	129, 212
FaiI	YATR	6 cut(s)	127, 133, 175, 191, 210, 286
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FatI	CATG	2 cut(s)	125, 208
FbaI	TGATCA	1 cut(s)	3
FokI	GGATG	1 cut(s)	88
FriOI	GRGCYC	2 cut(s)	98, 267
Hin1II	CATG	2 cut(s)	129, 212
HinfI	GANTC	1 cut(s)	20
Hpy188I	TCNGA	2 cut(s)	8, 229
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	2 cut(s)	107, 135
HpyCH4V	TGCA	1 cut(s)	288
HpySE526I	ACGT	2 cut(s)	107, 135
Hsp92II	CATG	2 cut(s)	129, 212
KpnI	GGTACC	1 cut(s)	72
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 46
LguI	GCTCTTC	1 cut(s)	4
LmnI	GCTCC	2 cut(s)	93, 262
LpnPI	CCDG	6 cut(s)	10, 37, 58, 73, 85, 217
MaeII	ACGT	2 cut(s)	107, 135
MaeIII	GTNAC	3 cut(s)	36, 145, 241
MalI	GATC	2 cut(s)	5, 48
MboI	GATC	2 cut(s)	3, 46
MboII	GAAGA	3 cut(s)	21, 264, 281
MhlI	GDGCHC	2 cut(s)	98, 267
MluCI	AATT	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	29
MnlI	CCTC	4 cut(s)	25, 53, 208, 248
Mph1103I	ATGCAT	1 cut(s)	290
MroXI	GAANNNNTTC	1 cut(s)	164
MspR9I	CCNGG	2 cut(s)	25, 73
MvaI	CCWGG	2 cut(s)	25, 73
NcoI	CCATGG	1 cut(s)	125
NdeII	GATC	2 cut(s)	3, 46
NlaIII	CATG	2 cut(s)	129, 212
NlaIV	GGNNCC	2 cut(s)	70, 123
NmuCI	GTSAC	2 cut(s)	36, 241
NsiI	ATGCAT	1 cut(s)	290
PciSI	GCTCTTC	1 cut(s)	4
PcsI	WCGNNNNNNNCGW	2 cut(s)	104, 149
PdmI	GAANNNNTTC	1 cut(s)	164
Pfl23II	CGTACG	1 cut(s)	140
PfoI	TCCNGGA	1 cut(s)	23
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
Psp124BI	GAGCTC	2 cut(s)	98, 267
Psp6I	CCWGG	2 cut(s)	23, 71
PspGI	CCWGG	2 cut(s)	23, 71
PspLI	CGTACG	1 cut(s)	140
PspN4I	GGNNCC	2 cut(s)	70, 123
PspPI	GGNCC	1 cut(s)	27
RsaI	GTAC	2 cut(s)	70, 142
RsaNI	GTAC	2 cut(s)	69, 141
SacI	GAGCTC	2 cut(s)	98, 267
SapI	GCTCTTC	1 cut(s)	4
Sau3AI	GATC	2 cut(s)	3, 46
Sau96I	GGNCC	1 cut(s)	27
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	2 cut(s)	25, 73
SduI	GDGCHC	2 cut(s)	98, 267
SetI	ASST	6 cut(s)	36, 74, 98, 110, 138, 267
SfcI	CTRYAG	1 cut(s)	189
SinI	GGWCC	1 cut(s)	27
Sse9I	AATT	1 cut(s)	230
SsiI	CCGC	1 cut(s)	91
SstI	GAGCTC	2 cut(s)	98, 267
StyD4I	CCNGG	2 cut(s)	23, 71
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	2 cut(s)	110, 138
TaqI	TCGA	3 cut(s)	45, 98, 267
TaqII	GACCGA	1 cut(s)	44
TasI	AATT	1 cut(s)	230
TseFI	GTSAC	2 cut(s)	36, 241
Tsp45I	GTSAC	2 cut(s)	36, 241
TspGWI	ACGGA	2 cut(s)	128, 283
VpaK11BI	GGWCC	1 cut(s)	27
XmnI	GAANNNNTTC	1 cut(s)	164
Zsp2I	ATGCAT	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.