Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0028846

Physical Location & Seq

Genomic Coordinates Reverse (-)

26240698 .. 26241335

Gene Structure 638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGAGGTTAATTTTAAGAAGCCAAAGAATAAGACATCATTCCGGAAGAAGCAGAAACTAGATGTGGATGCCCTCGAAGCAGAAGCAGTCTCGGCAGGGCTTGGTGCTGCTTATCTTGGTTCTCGGAATGGTGCAAATAGGCAGGGAGTTAGAGAGGAGAAAGAAAGATTGGAAGCTGAAAGGAAACGCATGATGAGGAGGAGGATCTCTACAGGTCCTTGGAGAGCAAGAAAATCAGCTCTTAGAAAGAAAGACGAAAAGGAGGAGAAAGCATCCGGTAGTCCAGAAGCAATTGCATTCCTTGCCACCACCAGCACTGGCAGAAGTCAGATTCCTAATGCAGCATATGATGATCAGAATCGAATCACCTCAAGCAGTGAAGATCAGTCCGGAGAAAAGAAGGTTGTCATCACAGAGACGAATGAGTTTTTGGTGGGTCTCAAGCTTGATCAAAGTCAATCCCACATGGATCCTGAAAGCGAAGATGTTTCCAATATGCAAGAAGATCGATCATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000481 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008380 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009908 GO:0009933 GO:0009965 GO:0009987 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010467 GO:0010588 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0030532 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048528 GO:0048532 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0061458 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090567 GO:0090696 GO:0090698 GO:0097525 GO:0097526 GO:0099402 GO:0120114 GO:1901360 GO:1905392 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SART-1

Protein Analysis

173

Amino Acids

19.3

Weight (kDa)

9.16

Isoelectric Point (pI)

51.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028846)

Species	Orthologous Gene IDs
malus_domestica	MD07G1289100.v1.1
pyrus_communis	pycom07g26170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	42, 389
AclWI	GGATC	3 cut(s)	212, 464, 477
AjuI	GAANNNNNNNTTGG	4 cut(s)	152, 184, 413, 445
AluBI	AGCT	3 cut(s)	176, 239, 445
AluI	AGCT	3 cut(s)	176, 239, 445
Alw26I	GTCTC	3 cut(s)	94, 410, 443
AlwI	GGATC	3 cut(s)	212, 464, 477
Aor13HI	TCCGGA	2 cut(s)	42, 389
ApeKI	GCWGC	2 cut(s)	107, 341
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	358
AvaII	GGWCC	1 cut(s)	215
BamHI	GGATCC	1 cut(s)	469
BbvI	GCAGC	2 cut(s)	94, 353
BcgI	CGANNNNNNTGC	1 cut(s)	488
BclI	TGATCA	2 cut(s)	352, 448
BcoDI	GTCTC	3 cut(s)	94, 410, 443
BfaI	CTAG	1 cut(s)	59
BfmI	CTRYAG	1 cut(s)	210
BisI	GCNGC	2 cut(s)	108, 342
BlsI	GCNGC	2 cut(s)	109, 343
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	471
BmsI	GCATC	2 cut(s)	58, 281
BpuEI	CTTGAG	2 cut(s)	355, 425
Bsa29I	ATCGAT	1 cut(s)	508
BsaBI	GATNNNNATC	1 cut(s)	357
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	218
BsaWI	WCCGGW	3 cut(s)	42, 275, 389
Bse1I	ACTGG	1 cut(s)	322
Bse8I	GATNNNNATC	1 cut(s)	357
BseAI	TCCGGA	2 cut(s)	42, 389
BseCI	ATCGAT	1 cut(s)	508
BseDI	CCNNGG	1 cut(s)	218
BseGI	GGATG	2 cut(s)	73, 272
BseJI	GATNNNNATC	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	322
BseRI	GAGGAG	4 cut(s)	170, 211, 214, 278
BseXI	GCAGC	2 cut(s)	94, 353
BshVI	ATCGAT	1 cut(s)	508
BsiSI	CCGG	3 cut(s)	43, 276, 390
BsmAI	GTCTC	3 cut(s)	94, 410, 443
BsmBI	CGTCTC	1 cut(s)	410
BsmI	GAATGC	1 cut(s)	296
Bso31I	GGTCTC	1 cut(s)	443
Bsp13I	TCCGGA	2 cut(s)	42, 389
Bsp143I	GATC	7 cut(s)	204, 352, 382, 448, 469, 505, 509
BspDI	ATCGAT	1 cut(s)	508
BspEI	TCCGGA	2 cut(s)	42, 389
BspLI	GGNNCC	1 cut(s)	471
BspPI	GGATC	3 cut(s)	212, 464, 477
BspTNI	GGTCTC	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	322
BssECI	CCNNGG	1 cut(s)	218
BssMI	GATC	7 cut(s)	204, 352, 382, 448, 469, 505, 509
BssT1I	CCWWGG	1 cut(s)	218
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstDEI	CTNAG	1 cut(s)	242
BstF5I	GGATG	2 cut(s)	73, 272
BstKTI	GATC	7 cut(s)	207, 355, 385, 451, 472, 508, 512
BstMAI	GTCTC	3 cut(s)	94, 410, 443
BstMBI	GATC	7 cut(s)	204, 352, 382, 448, 469, 505, 509
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 92, 302
BstSFI	CTRYAG	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	94, 353
BstX2I	RGATCY	2 cut(s)	204, 469
BstYI	RGATCY	2 cut(s)	204, 469
Bsu15I	ATCGAT	1 cut(s)	508
BsuTUI	ATCGAT	1 cut(s)	508
BtsCI	GGATG	2 cut(s)	73, 272
BtsI	GCAGTG	1 cut(s)	382
BtsIMutI	CAGTG	2 cut(s)	315, 382
Cfr13I	GGNCC	1 cut(s)	215
ClaI	ATCGAT	1 cut(s)	508
CviAII	CATG	3 cut(s)	190, 466, 513
CviJI	RGCY	5 cut(s)	22, 100, 176, 239, 445
CviKI_1	RGCY	5 cut(s)	22, 100, 176, 239, 445
DdeI	CTNAG	1 cut(s)	242
DpnI	GATC	7 cut(s)	206, 354, 384, 450, 471, 507, 511
DpnII	GATC	7 cut(s)	204, 352, 382, 448, 469, 505, 509
Eco130I	CCWWGG	1 cut(s)	218
Eco31I	GGTCTC	1 cut(s)	443
Eco47I	GGWCC	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	218
Esp3I	CGTCTC	1 cut(s)	410
FaeI	CATG	3 cut(s)	193, 469, 516
FaiI	YATR	6 cut(s)	191, 346, 348, 467, 497, 514
FatI	CATG	3 cut(s)	189, 465, 512
FauNDI	CATATG	1 cut(s)	346
FbaI	TGATCA	2 cut(s)	352, 448
Fnu4HI	GCNGC	2 cut(s)	108, 342
FokI	GGATG	2 cut(s)	80, 259
Fsp4HI	GCNGC	2 cut(s)	108, 342
FspBI	CTAG	1 cut(s)	59
GluI	GCNGC	2 cut(s)	108, 342
HapII	CCGG	3 cut(s)	43, 276, 390
Hin1II	CATG	3 cut(s)	193, 469, 516
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	3 cut(s)	331, 358, 363
HpaII	CCGG	3 cut(s)	43, 276, 390
HphI	GGTGA	1 cut(s)	358
Hpy188I	TCNGA	3 cut(s)	126, 330, 357
Hpy188III	TCNNGA	4 cut(s)	43, 284, 390, 473
HpyAV	CCTTC	1 cut(s)	394
HpyCH4V	TGCA	4 cut(s)	134, 296, 341, 499
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 92, 302
HpyF3I	CTNAG	1 cut(s)	242
Hsp92II	CATG	3 cut(s)	193, 469, 516
Kpn2I	TCCGGA	2 cut(s)	42, 389
Ksp22I	TGATCA	2 cut(s)	352, 448
Kzo9I	GATC	7 cut(s)	204, 352, 382, 448, 469, 505, 509
Lsp1109I	GCAGC	2 cut(s)	94, 353
LweI	GCATC	2 cut(s)	58, 281
MaeI	CTAG	1 cut(s)	59
MalI	GATC	7 cut(s)	206, 354, 384, 450, 471, 507, 511
MboI	GATC	7 cut(s)	204, 352, 382, 448, 469, 505, 509
MboII	GAAGA	4 cut(s)	58, 392, 494, 515
MfeI	CAATTG	1 cut(s)	291
MflI	RGATCY	2 cut(s)	204, 469
MluCI	AATT	2 cut(s)	10, 291
MnlI	CCTC	7 cut(s)	83, 148, 189, 192, 195, 256, 379
MroI	TCCGGA	2 cut(s)	42, 389
MseI	TTAA	2 cut(s)	9, 15
MspI	CCGG	3 cut(s)	43, 276, 390
MunI	CAATTG	1 cut(s)	291
Mva1269I	GAATGC	1 cut(s)	296
MwoI	GCNNNNNNNGC	3 cut(s)	77, 92, 302
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	7 cut(s)	204, 352, 382, 448, 469, 505, 509
NlaIII	CATG	3 cut(s)	193, 469, 516
NlaIV	GGNNCC	1 cut(s)	471
NmeAIII	GCCGAG	1 cut(s)	71
PctI	GAATGC	1 cut(s)	296
PfeI	GAWTC	3 cut(s)	331, 358, 363
PkrI	GCNGC	2 cut(s)	109, 343
PpuMI	RGGWCCY	1 cut(s)	215
Psp5II	RGGWCCY	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	471
PspPI	GGNCC	1 cut(s)	215
PspPPI	RGGWCCY	1 cut(s)	215
PsuI	RGATCY	2 cut(s)	204, 469
SaqAI	TTAA	2 cut(s)	9, 15
SatI	GCNGC	2 cut(s)	108, 342
Sau3AI	GATC	7 cut(s)	204, 352, 382, 448, 469, 505, 509
Sau96I	GGNCC	1 cut(s)	215
SetI	ASST	7 cut(s)	9, 178, 217, 241, 371, 405, 447
SfaNI	GCATC	2 cut(s)	58, 281
SfcI	CTRYAG	1 cut(s)	210
SinI	GGWCC	1 cut(s)	215
SmlI	CTYRAG	2 cut(s)	370, 440
SmoI	CTYRAG	2 cut(s)	370, 440
Sse9I	AATT	2 cut(s)	10, 291
SspMI	CTAG	1 cut(s)	59
StyI	CCWWGG	1 cut(s)	218
TaqI	TCGA	3 cut(s)	75, 361, 508
TasI	AATT	2 cut(s)	10, 291
TfiI	GAWTC	3 cut(s)	331, 358, 363
Tru1I	TTAA	2 cut(s)	9, 15
Tru9I	TTAA	2 cut(s)	9, 15
TscAI	CASTG	2 cut(s)	322, 382
TseI	GCWGC	2 cut(s)	107, 341
TspRI	CASTG	2 cut(s)	322, 382
VpaK11BI	GGWCC	1 cut(s)	215
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.