Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0028666

Physical Location & Seq

Genomic Coordinates Reverse (-)

3908819 .. 3909972

Gene Structure 1154 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGTAAGAAATTGTGGGACTCACACTAGAGGGAGAGTTCTTGCACTTGACTTGGGGGATGAGGAAAATATGAACAAACAAAAAAATTATGCCATTGTACGCAAGGTATCTACCGGTGGCCTTCCTGCCCTCGACAAGTCTCAGCCTCTCGAAACCATCTCTGCCGCACCTTGGCTTACGGTTATACTCTATGTTAAATTTCCTCTGTATGCTAAATTTGTCTGTCATTTTTTACAGAATTACTACCCCATTCTTTTCCGTGGTGTCAATGGAACTGTTGCCCATGAATTCACCGTTGATTTGAGAGGATTTAAGAATACTGGTGGGATAGAGCCTGAGGACGTCCCCAAGCGTCTTATGGACTACGGGTTCCATGGACCAACAATGTCATGGCCAGTTCCTGGCACTCGCATGATTGAGCCAACAGAAAGTGAAATTTTTCTTGCTTGCGACAGGCTTTGTGATGCTCTAATTTCCATCAGAGAAGAGATTGCTCAGACTGAGAAAGGAAAAGCTGATATTCTCAACAATGTCCTTAAAAAAGCTCCTCACCCGCCATCACTGCTCATGGGAGATGCATGGACAAAGCCATATTCCCGGGAATATGCAGCCTTCCCCTCTTCCTTGCTCCGTTCTTCAAAGTTCTGGCCTACTACAGGTATGCAATTTACACCAAAGATAAACTACAATGGCATGGAAGTTGCTAAGTGTTTGCTATACTTTCATTTTGGTGCTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001505 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006544 GO:0006546 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009069 GO:0009071 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016054 GO:0017076 GO:0017144 GO:0019752 GO:0030554 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042133 GO:0042135 GO:0042221 GO:0042737 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046686 GO:0048046 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

GDC-P

Protein Analysis

247

Amino Acids

27.7

Weight (kDa)

8.72

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GcvP2_C	PF21478	69 - 184	3.2e-44	Glycine dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028666)

Species	Orthologous Gene IDs
malus_domestica	MD08G1061400.v1.1
pyrus_communis	pycom08g05090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	345
AccB7I	CCANNNNNTGG	1 cut(s)	401
AciI	CCGC	2 cut(s)	165, 554
AcoI	YGGCCR	1 cut(s)	392
AcsI	RAATTY	4 cut(s)	197, 215, 287, 435
AcyI	GRCGYC	1 cut(s)	342
AfaI	GTAC	1 cut(s)	99
AfiI	CCNNNNNNNGG	3 cut(s)	171, 401, 656
AgeI	ACCGGT	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	639
AjnI	CCWGG	1 cut(s)	400
AloI	GAACNNNNNNTCC	2 cut(s)	353, 385
AluBI	AGCT	2 cut(s)	515, 545
AluI	AGCT	2 cut(s)	515, 545
Alw26I	GTCTC	1 cut(s)	144
AlwNI	CAGNNNCTG	1 cut(s)	401
Ama87I	CYCGRG	1 cut(s)	597
AoxI	GGCC	3 cut(s)	118, 392, 647
ApeKI	GCWGC	1 cut(s)	608
ApoI	RAATTY	4 cut(s)	197, 215, 287, 435
AsiGI	ACCGGT	1 cut(s)	113
Asp700I	GAANNNNTTC	1 cut(s)	438
AspS9I	GGNCC	1 cut(s)	377
AsuC2I	CCSGG	2 cut(s)	598, 599
AsuHPI	GGTGA	2 cut(s)	283, 542
AvaI	CYCGRG	1 cut(s)	597
AvaII	GGWCC	1 cut(s)	377
AxyI	CCTNAGG	1 cut(s)	336
BalI	TGGCCA	1 cut(s)	394
BbvI	GCAGC	1 cut(s)	620
BccI	CCATC	3 cut(s)	164, 485, 565
BciT130I	CCWGG	1 cut(s)	402
BcnI	CCSGG	2 cut(s)	598, 599
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	1 cut(s)	27
BfmI	CTRYAG	1 cut(s)	654
BisI	GCNGC	2 cut(s)	165, 609
BlsI	GCNGC	2 cut(s)	166, 610
Bme1390I	CCNGG	3 cut(s)	402, 598, 599
Bme18I	GGWCC	1 cut(s)	377
BmeT110I	CYCGRG	1 cut(s)	597
BmgT120I	GGNCC	1 cut(s)	377
BmiI	GGNNCC	1 cut(s)	371
BmrFI	CCNGG	3 cut(s)	402, 598, 599
BmsI	GCATC	2 cut(s)	454, 565
BpuMI	CCSGG	2 cut(s)	598, 599
BsaHI	GRCGYC	1 cut(s)	342
BsaJI	CCNNGG	4 cut(s)	170, 259, 373, 597
BsaWI	WCCGGW	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	3 cut(s)	171, 401, 656
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	2 cut(s)	325, 395
Bse21I	CCTNAGG	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	402
BseDI	CCNNGG	4 cut(s)	170, 259, 373, 597
BseGI	GGATG	1 cut(s)	64
BseLI	CCNNNNNNNGG	3 cut(s)	171, 401, 656
BseMII	CTCAG	4 cut(s)	155, 327, 492, 509
BseNI	ACTGG	2 cut(s)	325, 395
BseRI	GAGGAG	1 cut(s)	537
BseXI	GCAGC	1 cut(s)	620
BshFI	GGCC	3 cut(s)	120, 394, 649
BshTI	ACCGGT	1 cut(s)	113
BsiHKCI	CYCGRG	1 cut(s)	597
BsiSI	CCGG	2 cut(s)	114, 598
BslFI	GGGAC	2 cut(s)	31, 329
BslI	CCNNNNNNNGG	3 cut(s)	171, 401, 656
BsmAI	GTCTC	1 cut(s)	144
BsmFI	GGGAC	2 cut(s)	31, 329
BsnI	GGCC	3 cut(s)	120, 394, 649
BsoBI	CYCGRG	1 cut(s)	597
Bsp19I	CCATGG	1 cut(s)	373
BspACI	CCGC	2 cut(s)	165, 554
BspANI	GGCC	3 cut(s)	120, 394, 649
BspCNI	CTCAG	4 cut(s)	154, 328, 493, 508
BspLI	GGNNCC	1 cut(s)	371
BsrFI	RCCGGY	1 cut(s)	113
BsrI	ACTGG	2 cut(s)	325, 395
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	4 cut(s)	170, 259, 373, 597
BssNI	GRCGYC	1 cut(s)	342
BssT1I	CCWWGG	2 cut(s)	170, 373
Bst2UI	CCWGG	1 cut(s)	402
Bst4CI	ACNGT	3 cut(s)	181, 277, 295
Bst6I	CTCTTC	2 cut(s)	480, 625
BstACI	GRCGYC	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	448
BstDEI	CTNAG	5 cut(s)	141, 336, 495, 501, 705
BstDSI	CCRYGG	2 cut(s)	259, 373
BstENI	CCTNNNNNAGG	1 cut(s)	654
BstF5I	GGATG	1 cut(s)	64
BstMAI	GTCTC	1 cut(s)	144
BstMWI	GCNNNNNNNGC	1 cut(s)	562
BstNI	CCWGG	1 cut(s)	402
BstSCI	CCNGG	3 cut(s)	400, 596, 597
BstSFI	CTRYAG	1 cut(s)	654
BstV1I	GCAGC	1 cut(s)	620
Bsu36I	CCTNAGG	1 cut(s)	336
BsuRI	GGCC	3 cut(s)	120, 394, 649
BtgI	CCRYGG	2 cut(s)	259, 373
BtsCI	GGATG	1 cut(s)	64
BtsI	GCAGTG	1 cut(s)	560
BtsIMutI	CAGTG	1 cut(s)	560
Cac8I	GCNNGC	1 cut(s)	448
CaiI	CAGNNNCTG	1 cut(s)	401
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	377
Cfr9I	CCCGGG	1 cut(s)	597
CseI	GACGC	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	98
CspAI	ACCGGT	1 cut(s)	113
CviAII	CATG	7 cut(s)	284, 374, 390, 412, 568, 579, 694
CviQI	GTAC	1 cut(s)	98
DdeI	CTNAG	5 cut(s)	141, 336, 495, 501, 705
EaeI	YGGCCR	1 cut(s)	392
Eam1104I	CTCTTC	2 cut(s)	480, 625
EarI	CTCTTC	2 cut(s)	480, 625
Eco130I	CCWWGG	2 cut(s)	170, 373
Eco47I	GGWCC	1 cut(s)	377
Eco81I	CCTNAGG	1 cut(s)	336
Eco88I	CYCGRG	1 cut(s)	597
EcoNI	CCTNNNNNAGG	1 cut(s)	654
EcoRI	GAATTC	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	400
EcoT14I	CCWWGG	2 cut(s)	170, 373
EcoT22I	ATGCAT	1 cut(s)	580
ErhI	CCWWGG	2 cut(s)	170, 373
FaeI	CATG	7 cut(s)	287, 377, 393, 415, 571, 582, 697
FaqI	GGGAC	2 cut(s)	31, 329
FatI	CATG	7 cut(s)	283, 373, 389, 411, 567, 578, 693
FauI	CCCGC	1 cut(s)	561
Fnu4HI	GCNGC	2 cut(s)	165, 609
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	2 cut(s)	165, 609
FspBI	CTAG	1 cut(s)	27
GluI	GCNGC	2 cut(s)	165, 609
HaeIII	GGCC	3 cut(s)	120, 394, 649
HapII	CCGG	2 cut(s)	114, 598
HgaI	GACGC	1 cut(s)	341
Hin1I	GRCGYC	1 cut(s)	342
Hin1II	CATG	7 cut(s)	287, 377, 393, 415, 571, 582, 697
HinfI	GANTC	1 cut(s)	19
HpaII	CCGG	2 cut(s)	114, 598
HphI	GGTGA	2 cut(s)	283, 542
Hpy188I	TCNGA	3 cut(s)	482, 498, 740
Hpy188III	TCNNGA	1 cut(s)	149
HpyAV	CCTTC	2 cut(s)	131, 622
HpyCH4III	ACNGT	3 cut(s)	181, 277, 295
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	4 cut(s)	44, 578, 608, 664
HpyF10VI	GCNNNNNNNGC	1 cut(s)	562
HpyF3I	CTNAG	5 cut(s)	141, 336, 495, 501, 705
HpySE526I	ACGT	1 cut(s)	342
Hsp92I	GRCGYC	1 cut(s)	342
Hsp92II	CATG	7 cut(s)	287, 377, 393, 415, 571, 582, 697
LmnI	GCTCC	2 cut(s)	550, 633
Lsp1109I	GCAGC	1 cut(s)	620
LweI	GCATC	2 cut(s)	454, 565
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	1 cut(s)	342
MboII	GAAGA	3 cut(s)	497, 612, 627
MlsI	TGGCCA	1 cut(s)	394
MluCI	AATT	9 cut(s)	10, 85, 197, 215, 238, 287, 435, 471, 665
MluNI	TGGCCA	1 cut(s)	394
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	9 cut(s)	23, 55, 140, 156, 213, 299, 331, 558, 628
Mox20I	TGGCCA	1 cut(s)	394
Mph1103I	ATGCAT	1 cut(s)	580
MroXI	GAANNNNTTC	1 cut(s)	438
MscI	TGGCCA	1 cut(s)	394
MseI	TTAA	3 cut(s)	195, 312, 537
MslI	CAYNNNNRTG	2 cut(s)	410, 729
Msp20I	TGGCCA	1 cut(s)	394
MspI	CCGG	2 cut(s)	114, 598
MspR9I	CCNGG	3 cut(s)	402, 598, 599
MvaI	CCWGG	1 cut(s)	402
MwoI	GCNNNNNNNGC	1 cut(s)	562
NciI	CCSGG	2 cut(s)	598, 599
NcoI	CCATGG	1 cut(s)	373
NlaIII	CATG	7 cut(s)	287, 377, 393, 415, 571, 582, 697
NlaIV	GGNNCC	1 cut(s)	371
NsiI	ATGCAT	1 cut(s)	580
PdmI	GAANNNNTTC	1 cut(s)	438
PflMI	CCANNNNNTGG	1 cut(s)	401
PinAI	ACCGGT	1 cut(s)	113
PkrI	GCNGC	2 cut(s)	166, 610
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	400
PspN4I	GGNNCC	1 cut(s)	371
PspPI	GGNCC	1 cut(s)	377
PstNI	CAGNNNCTG	1 cut(s)	401
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
RseI	CAYNNNNRTG	2 cut(s)	410, 729
SaqAI	TTAA	3 cut(s)	195, 312, 537
SatI	GCNGC	2 cut(s)	165, 609
Sau96I	GGNCC	1 cut(s)	377
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	3 cut(s)	402, 598, 599
SetI	ASST	6 cut(s)	108, 172, 345, 517, 547, 661
SfaNI	GCATC	2 cut(s)	454, 565
SfcI	CTRYAG	1 cut(s)	654
SinI	GGWCC	1 cut(s)	377
SmaI	CCCGGG	1 cut(s)	599
SmiMI	CAYNNNNRTG	2 cut(s)	410, 729
Sse9I	AATT	9 cut(s)	10, 85, 197, 215, 238, 287, 435, 471, 665
SsiI	CCGC	2 cut(s)	165, 554
SspMI	CTAG	1 cut(s)	27
StyD4I	CCNGG	3 cut(s)	400, 596, 597
StyI	CCWWGG	2 cut(s)	170, 373
TaaI	ACNGT	3 cut(s)	181, 277, 295
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	2 cut(s)	132, 150
TasI	AATT	9 cut(s)	10, 85, 197, 215, 238, 287, 435, 471, 665
TauI	GCSGC	1 cut(s)	167
Tru1I	TTAA	3 cut(s)	195, 312, 537
Tru9I	TTAA	3 cut(s)	195, 312, 537
TscAI	CASTG	1 cut(s)	567
TseI	GCWGC	1 cut(s)	608
TspDTI	ATGAA	3 cut(s)	86, 300, 713
TspGWI	ACGGA	2 cut(s)	248, 620
TspMI	CCCGGG	1 cut(s)	597
TspRI	CASTG	1 cut(s)	567
Van91I	CCANNNNNTGG	1 cut(s)	401
VpaK11BI	GGWCC	1 cut(s)	377
XagI	CCTNNNNNAGG	1 cut(s)	654
XapI	RAATTY	4 cut(s)	197, 215, 287, 435
XcmI	CCANNNNNNNNNTGG	2 cut(s)	355, 387
XmaI	CCCGGG	1 cut(s)	597
XmnI	GAANNNNTTC	1 cut(s)	438
XspI	CTAG	1 cut(s)	27
ZraI	GACGTC	1 cut(s)	343
Zsp2I	ATGCAT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.