pycom08g08670

phosphatidylglycerol acyl-chain remodeling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0028654
Physical Location & Seq
Forward (+)
6962510 .. 6965491
2982 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1002 bp
ATGATATTCTTAATCAATCCTGAACTTCCCCATTGGAATTGCCCTGAAAAAAGTGACCAAGACACAAGTCCAAGGGATGCATCCTCTTCCGATCAAGTAAATTCTGTTGAGAGTGTGGATAAATCTGTGTCCAGAATTTCAGATGATGTTAACATATCCAGTTCTATGGATGCATCTCGTAGTAATGCAGCCACAAGGGAGCCTCTGCTGGATATTGTTTTTGTCCATGGCCTCCGTGGAGGCCCTTATAAGACTTGGCGCATATCCGAGGACAAGTCATCCACCAAGTCTGGCTTAGTAGAGAAGATTGACCAGGAAGCGGGAAAGCTAGGAACATTCTGGCCAGGTGAATGGCTTTCATCTGACTTTCCTCGAGCTCGTATGTTTACCCTTAAATACAAGACAAATCTAACACAGTGGTCCGGTGCTAGCCTGCCTCTTCAGGAAGTTAGCTCGATGCTGTTAGAGAAGCTTGTTTCTGCAGGTATTGGGAATCGACCTGTTGTTTTCGTGACTCACAGCATGGGAGGTCTGGTTGTCAAGCAGATACTGCATAAAGCAAGAGCAGATAATATCAATAACCTCGTGAAAAACACCATTGGAGTTGTTTTCTATAGCTGCCCACATTTTGGAAGCAAACTAGCTGACATGCCTTGGAGAATGGGATTTGTGTTTCGCCCAGCACCGACTATAGGGGAGCTAAGAAGTGGATCTCCAAGATTAGTAGAGCTTAATGACTTTATCCGTCAGCTTCACAAGAAGGGGATGCTTCAAGTCCTCAGTTTCTGTGAGACCAAGGTAACTCCAATTGTTGAAGGTTACGGCGGATGGGCCTTCCGGATGGAAATTGTACCAATTGAATCAGCATATCCTGGATTTGGCGATCTCGTTGTACTAGACTCAACAGATCACATAAACTCGTGCAAACCACTCAGCCGCAGCGATCCCTCATATACAGAGATATTACAGTTTTTGCGGAAGCTGAAAGCAAGCCAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

334

Amino Acids

37.07

Weight (kDa)

8.57

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028654)

Species Orthologous Gene IDs
malus_domestica MD08G1105800.v1.1
pyrus_communis pycom08g08670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 249
Acc36I ACCTGC 1 cut(s) 473
AccB7I CCANNNNNTGG 1 cut(s) 629
AccIII TCCGGA 1 cut(s) 837
AciI CCGC 4 cut(s) 320, 825, 937, 976
AclWI GGATC 2 cut(s) 718, 938
AcoI YGGCCR 1 cut(s) 341
AcsI RAATTY 2 cut(s) 100, 135
AcuI CTGAAG 1 cut(s) 425
AfaI GTAC 2 cut(s) 852, 894
AfiI CCNNNNNNNGG 4 cut(s) 319, 629, 692, 878
AgsI TTSAA 3 cut(s) 773, 815, 860
AjnI CCWGG 3 cut(s) 312, 343, 871
Alw21I GWGCWC 1 cut(s) 379
Alw26I GTCTC 1 cut(s) 785
AlwI GGATC 2 cut(s) 718, 938
AlwNI CAGNNNCTG 2 cut(s) 550, 786
Ama87I CYCGRG 1 cut(s) 372
Aor13HI TCCGGA 1 cut(s) 837
AoxI GGCC 4 cut(s) 229, 241, 341, 831
ApeKI GCWGC 3 cut(s) 188, 618, 939
ApoI RAATTY 2 cut(s) 100, 135
AspLEI GCGC 1 cut(s) 261
AspS9I GGNCC 3 cut(s) 242, 420, 831
AsuHPI GGTGA 1 cut(s) 359
AsuNHI GCTAGC 1 cut(s) 428
AvaI CYCGRG 1 cut(s) 372
AvaII GGWCC 1 cut(s) 420
BalI TGGCCA 1 cut(s) 343
BanII GRGCYC 1 cut(s) 379
BauI CACGAG 2 cut(s) 584, 919
Bbv12I GWGCWC 1 cut(s) 379
BbvI GCAGC 3 cut(s) 200, 605, 951
BccI CCATC 2 cut(s) 822, 835
BceAI ACGGC 1 cut(s) 838
BciT130I CCWGG 3 cut(s) 314, 345, 873
BcoDI GTCTC 1 cut(s) 785
BfaI CTAG 4 cut(s) 329, 429, 641, 896
BfmI CTRYAG 3 cut(s) 480, 613, 690
BfuAI ACCTGC 1 cut(s) 473
BisI GCNGC 4 cut(s) 189, 619, 937, 940
BlsI GCNGC 4 cut(s) 190, 620, 938, 941
Bme1390I CCNGG 3 cut(s) 314, 345, 873
Bme18I GGWCC 1 cut(s) 420
BmeT110I CYCGRG 1 cut(s) 372
BmgT120I GGNCC 3 cut(s) 242, 420, 831
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 3 cut(s) 314, 345, 873
BmsI GCATC 6 cut(s) 67, 89, 160, 182, 447, 756
BmtI GCTAGC 1 cut(s) 432
BoxI GACNNNNGTC 1 cut(s) 66
BsaI GGTCTC 1 cut(s) 785
BsaJI CCNNGG 6 cut(s) 71, 226, 235, 267, 653, 795
BsaWI WCCGGW 2 cut(s) 422, 837
BsaXI ACNNNNNCTCC 2 cut(s) 519, 549
Bsc4I CCNNNNNNNGG 4 cut(s) 319, 629, 692, 878
Bse1I ACTGG 1 cut(s) 159
BseAI TCCGGA 1 cut(s) 837
BseBI CCWGG 3 cut(s) 314, 345, 873
BseDI CCNNGG 6 cut(s) 71, 226, 235, 267, 653, 795
BseGI GGATG 7 cut(s) 80, 82, 175, 278, 771, 833, 846
BseLI CCNNNNNNNGG 4 cut(s) 319, 629, 692, 878
BseMII CTCAG 2 cut(s) 793, 946
BseNI ACTGG 1 cut(s) 159
BseXI GCAGC 3 cut(s) 200, 605, 951
BseYI CCCAGC 1 cut(s) 679
BshFI GGCC 4 cut(s) 231, 243, 343, 833
BsiHKAI GWGCWC 1 cut(s) 379
BsiHKCI CYCGRG 1 cut(s) 372
BsiSI CCGG 2 cut(s) 423, 838
BslI CCNNNNNNNGG 4 cut(s) 319, 629, 692, 878
BsmAI GTCTC 1 cut(s) 785
BsnI GGCC 4 cut(s) 231, 243, 343, 833
Bso31I GGTCTC 1 cut(s) 785
BsoBI CYCGRG 1 cut(s) 372
Bsp1286I GDGCHC 1 cut(s) 379
Bsp13I TCCGGA 1 cut(s) 837
Bsp143I GATC 5 cut(s) 91, 710, 883, 907, 943
Bsp19I CCATGG 1 cut(s) 226
BspACI CCGC 4 cut(s) 320, 825, 937, 976
BspANI GGCC 4 cut(s) 231, 243, 343, 833
BspCNI CTCAG 2 cut(s) 792, 945
BspEI TCCGGA 1 cut(s) 837
BspLI GGNNCC 1 cut(s) 201
BspMAI CTGCAG 1 cut(s) 484
BspMI ACCTGC 1 cut(s) 473
BspOI GCTAGC 1 cut(s) 432
BspPI GGATC 2 cut(s) 718, 938
BspTNI GGTCTC 1 cut(s) 785
BsrI ACTGG 1 cut(s) 159
BssECI CCNNGG 6 cut(s) 71, 226, 235, 267, 653, 795
BssMI GATC 5 cut(s) 91, 710, 883, 907, 943
BssSI CACGAG 2 cut(s) 584, 919
BssT1I CCWWGG 4 cut(s) 71, 226, 653, 795
Bst2BI CACGAG 2 cut(s) 584, 919
Bst2UI CCWGG 3 cut(s) 314, 345, 873
Bst4CI ACNGT 2 cut(s) 417, 969
Bst6I CTCTTC 2 cut(s) 91, 444
BstAPI GCANNNNNTGC 1 cut(s) 550
BstC8I GCNNGC 3 cut(s) 430, 434, 991
BstDEI CTNAG 4 cut(s) 295, 701, 779, 932
BstDSI CCRYGG 2 cut(s) 226, 235
BstF5I GGATG 7 cut(s) 80, 82, 175, 278, 771, 833, 846
BstHHI GCGC 1 cut(s) 261
BstKTI GATC 5 cut(s) 94, 713, 886, 910, 946
BstMAI GTCTC 1 cut(s) 785
BstMBI GATC 5 cut(s) 91, 710, 883, 907, 943
BstMWI GCNNNNNNNGC 1 cut(s) 550
BstNI CCWGG 3 cut(s) 314, 345, 873
BstNSI RCATGY 1 cut(s) 652
BstPAI GACNNNNGTC 1 cut(s) 66
BstSCI CCNGG 3 cut(s) 312, 343, 871
BstSFI CTRYAG 3 cut(s) 480, 613, 690
BstV1I GCAGC 3 cut(s) 200, 605, 951
BstX2I RGATCY 1 cut(s) 710
BstXI CCANNNNNNTGG 2 cut(s) 166, 351
BstYI RGATCY 1 cut(s) 710
BsuRI GGCC 4 cut(s) 231, 243, 343, 833
BtgI CCRYGG 2 cut(s) 226, 235
BtsCI GGATG 7 cut(s) 80, 82, 175, 278, 771, 833, 846
BtsIMutI CAGTG 1 cut(s) 422
BveI ACCTGC 1 cut(s) 473
Cac8I GCNNGC 3 cut(s) 430, 434, 991
CaiI CAGNNNCTG 2 cut(s) 550, 786
CfoI GCGC 1 cut(s) 261
Cfr13I GGNCC 3 cut(s) 242, 420, 831
Csp6I GTAC 2 cut(s) 851, 893
CviAII CATG 3 cut(s) 227, 523, 649
CviQI GTAC 2 cut(s) 851, 893
DdeI CTNAG 4 cut(s) 295, 701, 779, 932
DpnI GATC 5 cut(s) 93, 712, 885, 909, 945
DpnII GATC 5 cut(s) 91, 710, 883, 907, 943
EaeI YGGCCR 1 cut(s) 341
Eam1104I CTCTTC 2 cut(s) 91, 444
EarI CTCTTC 2 cut(s) 91, 444
EciI GGCGGA 1 cut(s) 840
Ecl136II GAGCTC 1 cut(s) 377
Eco130I CCWWGG 4 cut(s) 71, 226, 653, 795
Eco24I GRGCYC 1 cut(s) 379
Eco31I GGTCTC 1 cut(s) 785
Eco47I GGWCC 1 cut(s) 420
Eco53kI GAGCTC 1 cut(s) 377
Eco57I CTGAAG 1 cut(s) 425
Eco88I CYCGRG 1 cut(s) 372
EcoICRI GAGCTC 1 cut(s) 377
EcoO109I RGGNCCY 1 cut(s) 242
EcoRII CCWGG 3 cut(s) 312, 343, 871
EcoT14I CCWWGG 4 cut(s) 71, 226, 653, 795
EcoT22I ATGCAT 2 cut(s) 82, 175
EcoT38I GRGCYC 1 cut(s) 379
ErhI CCWWGG 4 cut(s) 71, 226, 653, 795
FaeI CATG 3 cut(s) 230, 526, 652
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FatI CATG 3 cut(s) 226, 522, 648
FauI CCCGC 1 cut(s) 313
Fnu4HI GCNGC 4 cut(s) 189, 619, 937, 940
FokI GGATG 7 cut(s) 67, 89, 182, 265, 778, 840, 853
FriOI GRGCYC 1 cut(s) 379
Fsp4HI GCNGC 4 cut(s) 189, 619, 937, 940
FspBI CTAG 4 cut(s) 329, 429, 641, 896
GlaI GCGC 1 cut(s) 260
GluI GCNGC 4 cut(s) 189, 619, 937, 940
GsaI CCCAGC 1 cut(s) 683
HaeIII GGCC 4 cut(s) 231, 243, 343, 833
HapII CCGG 2 cut(s) 423, 838
HhaI GCGC 1 cut(s) 261
Hin1II CATG 3 cut(s) 230, 526, 652
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 4 cut(s) 493, 514, 860, 899
HpaI GTTAAC 1 cut(s) 151
HpaII CCGG 2 cut(s) 423, 838
HphI GGTGA 1 cut(s) 359
Hpy166II GTNNAC 2 cut(s) 151, 387
Hpy188I TCNGA 4 cut(s) 91, 142, 268, 364
Hpy188III TCNNGA 6 cut(s) 20, 132, 443, 511, 586, 838
Hpy8I GTNNAC 2 cut(s) 151, 387
HpyAV CCTTC 3 cut(s) 754, 809, 844
HpyCH4III ACNGT 2 cut(s) 417, 969
HpyCH4V TGCA 6 cut(s) 80, 173, 188, 482, 553, 924
HpyF10VI GCNNNNNNNGC 1 cut(s) 550
HpyF3I CTNAG 4 cut(s) 295, 701, 779, 932
Hsp92II CATG 3 cut(s) 230, 526, 652
HspAI GCGC 1 cut(s) 259
Kpn2I TCCGGA 1 cut(s) 837
KspAI GTTAAC 1 cut(s) 151
Kzo9I GATC 5 cut(s) 91, 710, 883, 907, 943
LmnI GCTCC 2 cut(s) 199, 697
Lsp1109I GCAGC 3 cut(s) 200, 605, 951
LweI GCATC 6 cut(s) 67, 89, 160, 182, 447, 756
MaeI CTAG 4 cut(s) 329, 429, 641, 896
MaeIII GTNAC 4 cut(s) 53, 511, 799, 818
MalI GATC 5 cut(s) 93, 712, 885, 909, 945
MboI GATC 5 cut(s) 91, 710, 883, 907, 943
MboII GAAGA 3 cut(s) 78, 316, 431
MfeI CAATTG 2 cut(s) 807, 855
MflI RGATCY 1 cut(s) 710
MhlI GDGCHC 1 cut(s) 379
MlsI TGGCCA 1 cut(s) 343
MluCI AATT 6 cut(s) 37, 100, 135, 807, 846, 855
MluNI TGGCCA 1 cut(s) 343
MlyI GAGTC 2 cut(s) 508, 893
Mox20I TGGCCA 1 cut(s) 343
Mph1103I ATGCAT 2 cut(s) 82, 175
MroI TCCGGA 1 cut(s) 837
MscI TGGCCA 1 cut(s) 343
MseI TTAA 4 cut(s) 11, 150, 393, 732
Msp20I TGGCCA 1 cut(s) 343
MspI CCGG 2 cut(s) 423, 838
MspR9I CCNGG 3 cut(s) 314, 345, 873
MunI CAATTG 2 cut(s) 807, 855
MvaI CCWGG 3 cut(s) 314, 345, 873
MwoI GCNNNNNNNGC 1 cut(s) 550
NcoI CCATGG 1 cut(s) 226
NdeII GATC 5 cut(s) 91, 710, 883, 907, 943
NheI GCTAGC 1 cut(s) 428
NlaIII CATG 3 cut(s) 230, 526, 652
NlaIV GGNNCC 1 cut(s) 201
NmuCI GTSAC 2 cut(s) 53, 511
NsiI ATGCAT 2 cut(s) 82, 175
NspI RCATGY 1 cut(s) 652
PaeR7I CTCGAG 1 cut(s) 372
PfeI GAWTC 2 cut(s) 493, 860
PflMI CCANNNNNTGG 1 cut(s) 629
PfoI TCCNGGA 1 cut(s) 871
PkrI GCNGC 4 cut(s) 190, 620, 938, 941
PleI GAGTC 2 cut(s) 508, 893
PpsI GAGTC 2 cut(s) 508, 893
PshAI GACNNNNGTC 1 cut(s) 66
PsiI TTATAA 1 cut(s) 249
Psp124BI GAGCTC 1 cut(s) 379
Psp6I CCWGG 3 cut(s) 312, 343, 871
PspFI CCCAGC 1 cut(s) 679
PspGI CCWGG 3 cut(s) 312, 343, 871
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 3 cut(s) 242, 420, 831
PspXI VCTCGAGB 1 cut(s) 372
PstI CTGCAG 1 cut(s) 484
PstNI CAGNNNCTG 2 cut(s) 550, 786
PsuI RGATCY 1 cut(s) 710
RsaI GTAC 2 cut(s) 852, 894
RsaNI GTAC 2 cut(s) 851, 893
SacI GAGCTC 1 cut(s) 379
SaqAI TTAA 4 cut(s) 11, 150, 393, 732
SatI GCNGC 4 cut(s) 189, 619, 937, 940
Sau3AI GATC 5 cut(s) 91, 710, 883, 907, 943
Sau96I GGNCC 3 cut(s) 242, 420, 831
SchI GAGTC 2 cut(s) 508, 893
ScrFI CCNGG 3 cut(s) 314, 345, 873
SduI GDGCHC 1 cut(s) 379
SfaNI GCATC 6 cut(s) 67, 89, 160, 182, 447, 756
SfcI CTRYAG 3 cut(s) 480, 613, 690
Sfr274I CTCGAG 1 cut(s) 372
SinI GGWCC 1 cut(s) 420
SlaI CTCGAG 1 cut(s) 372
SmlI CTYRAG 1 cut(s) 372
SmoI CTYRAG 1 cut(s) 372
Sse9I AATT 6 cut(s) 37, 100, 135, 807, 846, 855
SsiI CCGC 4 cut(s) 320, 825, 937, 976
SspMI CTAG 4 cut(s) 329, 429, 641, 896
SstI GAGCTC 1 cut(s) 379
StyD4I CCNGG 3 cut(s) 312, 343, 871
StyI CCWWGG 4 cut(s) 71, 226, 653, 795
TaaI ACNGT 2 cut(s) 417, 969
TaqI TCGA 3 cut(s) 373, 455, 496
TasI AATT 6 cut(s) 37, 100, 135, 807, 846, 855
TatI WGTACW 1 cut(s) 892
TauI GCSGC 1 cut(s) 939
TfiI GAWTC 2 cut(s) 493, 860
Tru1I TTAA 4 cut(s) 11, 150, 393, 732
Tru9I TTAA 4 cut(s) 11, 150, 393, 732
TscAI CASTG 1 cut(s) 422
TseFI GTSAC 2 cut(s) 53, 511
TseI GCWGC 3 cut(s) 188, 618, 939
Tsp45I GTSAC 2 cut(s) 53, 511
TspDTI ATGAA 1 cut(s) 348
TspGWI ACGGA 2 cut(s) 224, 734
TspRI CASTG 1 cut(s) 422
Van91I CCANNNNNTGG 1 cut(s) 629
VpaK11BI GGWCC 1 cut(s) 420
XapI RAATTY 2 cut(s) 100, 135
XceI RCATGY 1 cut(s) 652
XcmI CCANNNNNNNNNTGG 1 cut(s) 233
XhoI CTCGAG 1 cut(s) 372
XspI CTAG 4 cut(s) 329, 429, 641, 896
Zsp2I ATGCAT 2 cut(s) 82, 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.