Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0029345

Physical Location & Seq

Genomic Coordinates Forward (+)

7090662 .. 7092242

Gene Structure 1581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g08770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCAATCGAACGGCTCTGATTCGTCGGTGCAACAGCAGGAGCAGCAGCAACAGAGTAATAACCATAACCAACGGCCGCAACAGGCGCAAGCACAGACGCCGCCGCCGCAGCAGTGGATGGCGATGCAGTACCCGACGGCGGCGATGGTAATGCAGCACCAGATGATGCCGCCGCAGCACTACGCGACTCCTCCGCCTCCGCCGCAGCACTACATGGCGTACCACCAGTACCAGCAGCAGCAGCACGTACAACACCTCCAGCAGCAGCAGTTGGGATCTGGCAGCGGCGAGAATAAGACCATCTGGGTCGGTGATTTGCACCATTGGATGGACGAGAGTTACCTTCACACCTGCTTCGCTTCCACCGGCGAGATTGCCTCCATCAAGCTTATTCGCAATAAGCAGACTCTTTTATCCGAGGGCTACGGCTTTGTGGAATTCTTTTCACATGCAACAGCTGAGAATGTTCTACAGAACTACGCTGGCATTCTAATGCCCAACACAGAACAGCCCTTCCGTCTGAACTGGGCTGCATTTAGCACGGGTGATAAGCGTTCAGATAATGCTCCAAGATTGATCTTTCCATTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0008143 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010494 GO:0032991 GO:0033554 GO:0034605 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070717 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

198

Amino Acids

22.61

Weight (kDa)

6.23

Isoelectric Point (pI)

73.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	101 - 168	2.2e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0029345)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g08770 pycom15g08180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	359
Acc36I	ACCTGC	1 cut(s)	359
AccB7I	CCANNNNNTGG	1 cut(s)	328
AccII	CGCG	1 cut(s)	185
AclWI	GGATC	1 cut(s)	283
AcoI	YGGCCR	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	437
AcyI	GRCGYC	1 cut(s)	98
AfaI	GTAC	4 cut(s)	131, 221, 230, 249
AfiI	CCNNNNNNNGG	2 cut(s)	139, 328
AloI	GAACNNNNNNTCC	2 cut(s)	498, 530
AluBI	AGCT	2 cut(s)	388, 458
AluI	AGCT	2 cut(s)	388, 458
AlwI	GGATC	1 cut(s)	283
AoxI	GGCC	1 cut(s)	74
ApoI	RAATTY	1 cut(s)	437
AspLEI	GCGC	1 cut(s)	88
AsuHPI	GGTGA	2 cut(s)	323, 557
BccI	CCATC	5 cut(s)	112, 139, 308, 322, 389
BceAI	ACGGC	4 cut(s)	28, 89, 153, 442
BcgI	CGANNNNNNTGC	2 cut(s)	133, 167
BfmI	CTRYAG	1 cut(s)	470
BfuAI	ACCTGC	1 cut(s)	359
BmrI	ACTGGG	1 cut(s)	535
BmsI	GCATC	2 cut(s)	114, 156
BmuI	ACTGGG	1 cut(s)	535
BplI	GAGNNNNNCTC	2 cut(s)	362, 394
BpmI	CTGGAG	1 cut(s)	242
BsaAI	YACGTR	1 cut(s)	247
BsaHI	GRCGYC	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	417
BsaXI	ACNNNNNCTCC	2 cut(s)	240, 270
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 328
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	2 cut(s)	226, 530
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	2 cut(s)	123, 333
BseLI	CCNNNNNNNGG	2 cut(s)	139, 328
BseMII	CTCAG	1 cut(s)	450
BseNI	ACTGG	2 cut(s)	226, 530
BseRI	GAGGAG	1 cut(s)	180
BseX3I	CGGCCG	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	185
Bsh1285I	CGRYCG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	76
BsiEI	CGRYCG	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	366
BslI	CCNNNNNNNGG	2 cut(s)	139, 328
BsmI	GAATGC	1 cut(s)	486
BsnI	GGCC	1 cut(s)	76
Bsp143I	GATC	2 cut(s)	275, 576
BspANI	GGCC	1 cut(s)	76
BspCNI	CTCAG	1 cut(s)	451
BspFNI	CGCG	1 cut(s)	185
BspMI	ACCTGC	1 cut(s)	359
BspPI	GGATC	1 cut(s)	283
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	2 cut(s)	226, 530
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	2 cut(s)	275, 576
BssNI	GRCGYC	1 cut(s)	98
BstACI	GRCGYC	1 cut(s)	98
BstBAI	YACGTR	1 cut(s)	247
BstC8I	GCNNGC	2 cut(s)	90, 484
BstDEI	CTNAG	1 cut(s)	459
BstF5I	GGATG	2 cut(s)	123, 333
BstFNI	CGCG	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	2 cut(s)	278, 579
BstMBI	GATC	2 cut(s)	275, 576
BstMCI	CGRYCG	1 cut(s)	77
BstMWI	GCNNNNNNNGC	7 cut(s)	43, 85, 106, 109, 175, 202, 241
BstNSI	RCATGY	1 cut(s)	452
BstSFI	CTRYAG	1 cut(s)	470
BstUI	CGCG	1 cut(s)	185
BstX2I	RGATCY	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	275
BstZI	CGGCCG	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	76
BtgZI	GCGATG	2 cut(s)	137, 158
BtsCI	GGATG	2 cut(s)	123, 333
BtsI	GCAGTG	1 cut(s)	119
BtsIMutI	CAGTG	1 cut(s)	119
BveI	ACCTGC	1 cut(s)	359
Cac8I	GCNNGC	2 cut(s)	90, 484
CfoI	GCGC	1 cut(s)	88
Cfr10I	RCCGGY	1 cut(s)	365
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	4 cut(s)	130, 220, 229, 248
CviAII	CATG	2 cut(s)	214, 449
CviJI	RGCY	8 cut(s)	15, 76, 388, 423, 429, 458, 511, 530
CviKI_1	RGCY	8 cut(s)	15, 76, 388, 423, 429, 458, 511, 530
CviQI	GTAC	4 cut(s)	130, 220, 229, 248
DdeI	CTNAG	1 cut(s)	459
DpnI	GATC	2 cut(s)	277, 578
DpnII	GATC	2 cut(s)	275, 576
EaeI	YGGCCR	1 cut(s)	74
EagI	CGGCCG	1 cut(s)	74
EciI	GGCGGA	2 cut(s)	183, 189
EclXI	CGGCCG	1 cut(s)	74
Eco52I	CGGCCG	1 cut(s)	74
EcoRI	GAATTC	1 cut(s)	437
FaeI	CATG	2 cut(s)	217, 452
FaiI	YATR	3 cut(s)	66, 215, 450
FatI	CATG	2 cut(s)	213, 448
FokI	GGATG	2 cut(s)	130, 340
GlaI	GCGC	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	76
HapII	CCGG	1 cut(s)	366
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	1 cut(s)	88
Hin1I	GRCGYC	1 cut(s)	98
Hin1II	CATG	2 cut(s)	217, 452
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	3 cut(s)	20, 187, 406
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	2 cut(s)	323, 557
Hpy188I	TCNGA	4 cut(s)	19, 418, 522, 559
Hpy99I	CGWCG	2 cut(s)	28, 139
HpyAV	CCTTC	2 cut(s)	353, 523
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	7 cut(s)	4, 31, 127, 154, 319, 452, 533
HpyF10VI	GCNNNNNNNGC	7 cut(s)	43, 85, 106, 109, 175, 202, 241
HpyF3I	CTNAG	1 cut(s)	459
HpySE526I	ACGT	1 cut(s)	246
Hsp92I	GRCGYC	1 cut(s)	98
Hsp92II	CATG	2 cut(s)	217, 452
HspAI	GCGC	1 cut(s)	86
Kzo9I	GATC	2 cut(s)	275, 576
LmnI	GCTCC	2 cut(s)	40, 571
LweI	GCATC	2 cut(s)	114, 156
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	2 cut(s)	277, 578
MboI	GATC	2 cut(s)	275, 576
MflI	RGATCY	1 cut(s)	275
MluCI	AATT	1 cut(s)	437
MlyI	GAGTC	2 cut(s)	181, 400
MnlI	CCTC	5 cut(s)	201, 207, 266, 388, 412
MslI	CAYNNNNRTG	1 cut(s)	491
MspA1I	CMGCKG	2 cut(s)	285, 458
MspI	CCGG	1 cut(s)	366
Mva1269I	GAATGC	1 cut(s)	486
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	7 cut(s)	43, 85, 106, 109, 175, 202, 241
NdeII	GATC	2 cut(s)	275, 576
NlaIII	CATG	2 cut(s)	217, 452
NspI	RCATGY	1 cut(s)	452
PaqCI	CACCTGC	1 cut(s)	359
PctI	GAATGC	1 cut(s)	486
PfeI	GAWTC	1 cut(s)	20
PflMI	CCANNNNNTGG	1 cut(s)	328
PleI	GAGTC	2 cut(s)	181, 400
PpsI	GAGTC	2 cut(s)	181, 400
Ppu21I	YACGTR	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	275
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	4 cut(s)	131, 221, 230, 249
RsaNI	GTAC	4 cut(s)	130, 220, 229, 248
RseI	CAYNNNNRTG	1 cut(s)	491
Sau3AI	GATC	2 cut(s)	275, 576
SchI	GAGTC	2 cut(s)	181, 400
SetI	ASST	6 cut(s)	249, 258, 345, 353, 390, 460
SfaNI	GCATC	2 cut(s)	114, 156
SfcI	CTRYAG	1 cut(s)	470
SgrAI	CRCCGGYG	1 cut(s)	365
SmiMI	CAYNNNNRTG	1 cut(s)	491
Sse9I	AATT	1 cut(s)	437
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	1 cut(s)	8
TasI	AATT	1 cut(s)	437
TauI	GCSGC	9 cut(s)	79, 103, 106, 109, 143, 172, 175, 205, 288
TfiI	GAWTC	1 cut(s)	20
TscAI	CASTG	1 cut(s)	119
TspGWI	ACGGA	1 cut(s)	506
TspRI	CASTG	1 cut(s)	119
Van91I	CCANNNNNTGG	1 cut(s)	328
XapI	RAATTY	1 cut(s)	437
XceI	RCATGY	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.