Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0028640

Physical Location & Seq

Genomic Coordinates Forward (+)

7403501 .. 7406201

Gene Structure 2701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGTTCGTGTCTCGGTGGCTGCGTGGCGGTTGTCCAAAATGTCCTCCGGGCATGGGAAGCACAAAGACAAGATTTTTCGAGTGATTGTCAAGGAGGACGTCAAGCTGGCAAAGGGGGTCGTCGAACTCCGCATGCACCCGGACAATGCGTCCGAATTCTCCAGGATGGACCCTTTGGAGAAGCCGAAAATGCGAATTTTTGACGCGGTGTGCAAGCTCACGGTGGGTGCAGAGCTGTCCCACATTCTTCTCGCTCTTCCTGCCCTAAGGGAAGCGCTGAAGACTTTAACTCCGTTTCAAGCGCTGGACTACCTGGTGAAAAAAGAGGGTGAAAAATGGGACCCGACCAGGGGGTACACACAGCAGGACCGCGCCAGAGATGATTTTACAAATAGCATGTGCAGGGACATGAGAAGGAAACTGTGTGGAGAGGCAAATGAACACAAACGAGAGGAATCGGCGGGAGGGAAGAAGGAAAAGGAATCTGCCGGAAAGAGGGAGGCCAACAAGGAGGAGCAATCGGGGGGAGAAAGCGAGGTCTCTTCGGAGGAGGCTGCTAGTAGAGGTCTCTTGCATCAGAGACCTATGGATGTTGATGTTTATTTGAATTGCCATCAGCGGAAATTGCAAATCCTTATGGCAGCGCCAGGGATTGGTGAATGCCTTGATTCCTGTAAATCCTTACTCTGCTGGAATTTATTGGTTGCCGAGGAAGTGAAGGCTATTTCTCAACGTGTTTCCCAAGTGAAGAACTGGATTGATCAATCTGGGGATTCTGACACTATTCGGATGAGCAGCACAGGTGATATGCAATGCTTGCTCTTGTCAGTAGTGTACAACATTGCAAGCATATTCCTCTCTAAGAAGTCCTCAGGTCCGGTAAATACTGATCAAATCGAAAGAAGTTGGTTCATTGAAGCTTCCGTCGCATTCTGCAAGATTCAGCACCTCAACGCCATGATAAATATTAAAACTCAAGTGAGTCTTGTCAACTCAAGTTGGTCATACAACGAACTCTCTCACGAATATTTTTTTTGTTACGTTCTCTTTAACTTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006996 GO:0008150 GO:0009892 GO:0009987 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0010941 GO:0014823 GO:0016043 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019888 GO:0019899 GO:0019902 GO:0019903 GO:0019904 GO:0022607 GO:0030234 GO:0030346 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031497 GO:0032268 GO:0032269 GO:0032515 GO:0034622 GO:0034724 GO:0034728 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0043933 GO:0044085 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051276 GO:0051336 GO:0051346 GO:0060255 GO:0060548 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0071103 GO:0071824 GO:0071840 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

354

Amino Acids

39.98

Weight (kDa)

8.24

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028640)

Species	Orthologous Gene IDs
malus_domestica	MD08G1109200.v1.1
pyrus_communis	pycom08g09160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	102
AccB7I	CCANNNNNTGG	1 cut(s)	653
AccII	CGCG	2 cut(s)	206, 372
AciI	CCGC	6 cut(s)	28, 130, 206, 370, 461, 619
AcsI	RAATTY	3 cut(s)	155, 195, 694
AcuI	CTGAAG	1 cut(s)	299
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	2 cut(s)	356, 836
AfeI	AGCGCT	2 cut(s)	276, 303
AfiI	CCNNNNNNNGG	5 cut(s)	54, 349, 350, 495, 653
AflIII	ACRYGT	1 cut(s)	733
AgsI	TTSAA	3 cut(s)	299, 607, 917
AhdI	GACNNNNNGTC	1 cut(s)	148
AjnI	CCWGG	4 cut(s)	161, 312, 347, 646
AluBI	AGCT	4 cut(s)	106, 217, 235, 920
AluI	AGCT	4 cut(s)	106, 217, 235, 920
Alw26I	GTCTC	4 cut(s)	16, 544, 572, 574
Aor51HI	AGCGCT	2 cut(s)	276, 303
AoxI	GGCC	1 cut(s)	501
ApeKI	GCWGC	4 cut(s)	20, 554, 641, 795
ApoI	RAATTY	3 cut(s)	155, 195, 694
AspLEI	GCGC	4 cut(s)	277, 304, 374, 646
AspS9I	GGNCC	4 cut(s)	169, 340, 367, 875
AsuC2I	CCSGG	2 cut(s)	49, 140
AsuHPI	GGTGA	4 cut(s)	328, 341, 668, 815
AvaII	GGWCC	4 cut(s)	169, 340, 367, 875
AxyI	CCTNAGG	2 cut(s)	266, 871
BbsI	GAAGAC	1 cut(s)	287
BbvI	GCAGC	4 cut(s)	7, 541, 653, 807
BccI	CCATC	2 cut(s)	160, 621
BciT130I	CCWGG	4 cut(s)	163, 314, 349, 648
BclI	TGATCA	2 cut(s)	760, 889
BcnI	CCSGG	2 cut(s)	49, 140
BcoDI	GTCTC	4 cut(s)	16, 544, 572, 574
BfaI	CTAG	1 cut(s)	558
BfoI	RGCGCY	3 cut(s)	278, 305, 647
BisI	GCNGC	4 cut(s)	21, 555, 642, 796
BlsI	GCNGC	4 cut(s)	22, 556, 643, 797
Bme1390I	CCNGG	6 cut(s)	49, 140, 163, 314, 349, 648
Bme18I	GGWCC	4 cut(s)	169, 340, 367, 875
BmeRI	GACNNNNNGTC	1 cut(s)	148
BmgT120I	GGNCC	4 cut(s)	169, 340, 367, 875
BmiI	GGNNCC	3 cut(s)	171, 341, 342
BmrFI	CCNGG	6 cut(s)	49, 140, 163, 314, 349, 648
BmsI	GCATC	1 cut(s)	583
BpiI	GAAGAC	1 cut(s)	287
BpmI	CTGGAG	1 cut(s)	145
BpuEI	CTTGAG	2 cut(s)	960, 979
BpuMI	CCSGG	2 cut(s)	49, 140
BsaHI	GRCGYC	1 cut(s)	99
BsaI	GGTCTC	3 cut(s)	544, 572, 574
BsaJI	CCNNGG	3 cut(s)	348, 647, 708
BsaWI	WCCGGW	1 cut(s)	877
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bsc4I	CCNNNNNNNGG	5 cut(s)	54, 349, 350, 495, 653
Bse1I	ACTGG	1 cut(s)	758
Bse21I	CCTNAGG	2 cut(s)	266, 871
Bse3DI	GCAATG	2 cut(s)	818, 840
BseBI	CCWGG	4 cut(s)	163, 314, 349, 648
BseDI	CCNNGG	3 cut(s)	348, 647, 708
BseGI	GGATG	3 cut(s)	171, 595, 795
BseLI	CCNNNNNNNGG	5 cut(s)	54, 349, 350, 495, 653
BseMI	GCAATG	2 cut(s)	818, 840
BseMII	CTCAG	1 cut(s)	885
BseNI	ACTGG	1 cut(s)	758
BseRI	GAGGAG	2 cut(s)	527, 563
BseXI	GCAGC	4 cut(s)	7, 541, 653, 807
BsgI	GTGCAG	2 cut(s)	249, 421
Bsh1236I	CGCG	2 cut(s)	206, 372
BshFI	GGCC	1 cut(s)	503
BsiSI	CCGG	4 cut(s)	48, 140, 489, 878
BslFI	GGGAC	3 cut(s)	223, 353, 419
BslI	CCNNNNNNNGG	5 cut(s)	54, 349, 350, 495, 653
BsmAI	GTCTC	4 cut(s)	16, 544, 572, 574
BsmFI	GGGAC	3 cut(s)	223, 353, 419
BsmI	GAATGC	2 cut(s)	665, 929
BsnI	GGCC	1 cut(s)	503
Bso31I	GGTCTC	3 cut(s)	544, 572, 574
Bsp1407I	TGTACA	1 cut(s)	834
Bsp143I	GATC	2 cut(s)	760, 889
BspACI	CCGC	6 cut(s)	28, 130, 206, 370, 461, 619
BspANI	GGCC	1 cut(s)	503
BspCNI	CTCAG	1 cut(s)	884
BspFNI	CGCG	2 cut(s)	206, 372
BspLI	GGNNCC	3 cut(s)	171, 341, 342
BspQI	GCTCTTC	1 cut(s)	261
BspTNI	GGTCTC	3 cut(s)	544, 572, 574
BsrDI	GCAATG	2 cut(s)	818, 840
BsrGI	TGTACA	1 cut(s)	834
BsrI	ACTGG	1 cut(s)	758
BssECI	CCNNGG	3 cut(s)	348, 647, 708
BssMI	GATC	2 cut(s)	760, 889
BssNI	GRCGYC	1 cut(s)	99
Bst2UI	CCWGG	4 cut(s)	163, 314, 349, 648
Bst4CI	ACNGT	2 cut(s)	223, 423
Bst6I	CTCTTC	2 cut(s)	261, 547
BstACI	GRCGYC	1 cut(s)	99
BstAPI	GCANNNNNTGC	1 cut(s)	817
BstAUI	TGTACA	1 cut(s)	834
BstC8I	GCNNGC	5 cut(s)	108, 134, 215, 818, 847
BstDEI	CTNAG	3 cut(s)	266, 861, 871
BstF5I	GGATG	3 cut(s)	171, 595, 795
BstFNI	CGCG	2 cut(s)	206, 372
BstH2I	RGCGCY	3 cut(s)	278, 305, 647
BstHHI	GCGC	4 cut(s)	277, 304, 374, 646
BstKTI	GATC	2 cut(s)	763, 892
BstMAI	GTCTC	4 cut(s)	16, 544, 572, 574
BstMBI	GATC	2 cut(s)	760, 889
BstMWI	GCNNNNNNNGC	6 cut(s)	58, 190, 260, 625, 817, 926
BstNI	CCWGG	4 cut(s)	163, 314, 349, 648
BstNSI	RCATGY	2 cut(s)	136, 400
BstSCI	CCNGG	6 cut(s)	47, 138, 161, 312, 347, 646
BstUI	CGCG	2 cut(s)	206, 372
BstV1I	GCAGC	4 cut(s)	7, 541, 653, 807
BstV2I	GAAGAC	1 cut(s)	287
Bsu36I	CCTNAGG	2 cut(s)	266, 871
BsuRI	GGCC	1 cut(s)	503
BtsCI	GGATG	3 cut(s)	171, 595, 795
Cac8I	GCNNGC	5 cut(s)	108, 134, 215, 818, 847
CfoI	GCGC	4 cut(s)	277, 304, 374, 646
Cfr13I	GGNCC	4 cut(s)	169, 340, 367, 875
CseI	GACGC	2 cut(s)	138, 212
CsiI	ACCWGGT	1 cut(s)	312
Csp6I	GTAC	2 cut(s)	355, 835
CviAII	CATG	5 cut(s)	53, 133, 397, 409, 958
CviJI	RGCY	9 cut(s)	20, 106, 184, 217, 235, 503, 554, 722, 920
CviKI_1	RGCY	9 cut(s)	20, 106, 184, 217, 235, 503, 554, 722, 920
CviQI	GTAC	2 cut(s)	355, 835
DdeI	CTNAG	3 cut(s)	266, 861, 871
DpnI	GATC	2 cut(s)	762, 891
DpnII	GATC	2 cut(s)	760, 889
DriI	GACNNNNNGTC	1 cut(s)	148
Eam1104I	CTCTTC	2 cut(s)	261, 547
Eam1105I	GACNNNNNGTC	1 cut(s)	148
EarI	CTCTTC	2 cut(s)	261, 547
Eco31I	GGTCTC	3 cut(s)	544, 572, 574
Eco47I	GGWCC	4 cut(s)	169, 340, 367, 875
Eco47III	AGCGCT	2 cut(s)	276, 303
Eco57I	CTGAAG	1 cut(s)	299
Eco81I	CCTNAGG	2 cut(s)	266, 871
EcoO109I	RGGNCCY	1 cut(s)	340
EcoRI	GAATTC	1 cut(s)	155
EcoRII	CCWGG	4 cut(s)	161, 312, 347, 646
FaeI	CATG	5 cut(s)	56, 136, 400, 412, 961
FalI	AAGNNNNNCTT	2 cut(s)	969, 1001
FaqI	GGGAC	3 cut(s)	223, 353, 419
FatI	CATG	5 cut(s)	52, 132, 396, 408, 957
FauI	CCCGC	1 cut(s)	454
FbaI	TGATCA	2 cut(s)	760, 889
Fnu4HI	GCNGC	4 cut(s)	21, 555, 642, 796
FokI	GGATG	3 cut(s)	178, 602, 802
Fsp4HI	GCNGC	4 cut(s)	21, 555, 642, 796
FspBI	CTAG	1 cut(s)	558
GlaI	GCGC	4 cut(s)	276, 303, 373, 645
GluI	GCNGC	4 cut(s)	21, 555, 642, 796
GsuI	CTGGAG	1 cut(s)	145
HaeII	RGCGCY	3 cut(s)	278, 305, 647
HaeIII	GGCC	1 cut(s)	503
HapII	CCGG	4 cut(s)	48, 140, 489, 878
HgaI	GACGC	2 cut(s)	138, 212
HhaI	GCGC	4 cut(s)	277, 304, 374, 646
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	5 cut(s)	56, 136, 400, 412, 961
Hin6I	GCGC	4 cut(s)	275, 302, 372, 644
HinP1I	GCGC	4 cut(s)	275, 302, 372, 644
HincII	GTYRAC	1 cut(s)	991
HindII	GTYRAC	1 cut(s)	991
HindIII	AAGCTT	1 cut(s)	918
HinfI	GANTC	6 cut(s)	455, 482, 668, 773, 940, 982
HpaII	CCGG	4 cut(s)	48, 140, 489, 878
HphI	GGTGA	4 cut(s)	328, 341, 668, 815
Hpy166II	GTNNAC	3 cut(s)	357, 835, 991
Hpy188I	TCNGA	5 cut(s)	154, 547, 579, 778, 789
Hpy188III	TCNNGA	1 cut(s)	1022
Hpy8I	GTNNAC	3 cut(s)	357, 835, 991
Hpy99I	CGWCG	2 cut(s)	125, 929
HpyAV	CCTTC	3 cut(s)	408, 466, 712
HpyCH4III	ACNGT	2 cut(s)	223, 423
HpyCH4IV	ACGT	3 cut(s)	99, 733, 1041
HpyCH4V	TGCA	9 cut(s)	136, 213, 230, 402, 574, 628, 811, 845, 936
HpyF10VI	GCNNNNNNNGC	6 cut(s)	58, 190, 260, 625, 817, 926
HpyF3I	CTNAG	3 cut(s)	266, 861, 871
HpySE526I	ACGT	3 cut(s)	99, 733, 1041
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	5 cut(s)	56, 136, 400, 412, 961
HspAI	GCGC	4 cut(s)	275, 302, 372, 644
KflI	GGGWCCC	1 cut(s)	340
Ksp22I	TGATCA	2 cut(s)	760, 889
Kzo9I	GATC	2 cut(s)	760, 889
LguI	GCTCTTC	1 cut(s)	261
LmnI	GCTCC	1 cut(s)	514
Lsp1109I	GCAGC	4 cut(s)	7, 541, 653, 807
LweI	GCATC	1 cut(s)	583
MabI	ACCWGGT	1 cut(s)	312
MaeI	CTAG	1 cut(s)	558
MaeII	ACGT	3 cut(s)	99, 733, 1041
MaeIII	GTNAC	1 cut(s)	1037
MalI	GATC	2 cut(s)	762, 891
MboI	GATC	2 cut(s)	760, 889
MboII	GAAGA	6 cut(s)	239, 248, 292, 481, 534, 760
MluCI	AATT	5 cut(s)	155, 195, 607, 623, 694
MlyI	GAGTC	1 cut(s)	991
MseI	TTAA	3 cut(s)	287, 969, 1050
MspA1I	CMGCKG	1 cut(s)	619
MspI	CCGG	4 cut(s)	48, 140, 489, 878
MspR9I	CCNGG	6 cut(s)	49, 140, 163, 314, 349, 648
Mva1269I	GAATGC	2 cut(s)	665, 929
MvaI	CCWGG	4 cut(s)	163, 314, 349, 648
MvnI	CGCG	2 cut(s)	206, 372
MwoI	GCNNNNNNNGC	6 cut(s)	58, 190, 260, 625, 817, 926
NciI	CCSGG	2 cut(s)	49, 140
NdeII	GATC	2 cut(s)	760, 889
NlaIII	CATG	5 cut(s)	56, 136, 400, 412, 961
NlaIV	GGNNCC	3 cut(s)	171, 341, 342
NmeAIII	GCCGAG	1 cut(s)	733
NspI	RCATGY	2 cut(s)	136, 400
PaeI	GCATGC	1 cut(s)	136
PciSI	GCTCTTC	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PctI	GAATGC	2 cut(s)	665, 929
PfeI	GAWTC	5 cut(s)	455, 482, 668, 773, 940
PflMI	CCANNNNNTGG	1 cut(s)	653
PfoI	TCCNGGA	1 cut(s)	161
PkrI	GCNGC	4 cut(s)	22, 556, 643, 797
PleI	GAGTC	1 cut(s)	990
PpsI	GAGTC	1 cut(s)	990
PpuMI	RGGWCCY	1 cut(s)	340
Psp5II	RGGWCCY	1 cut(s)	340
Psp6I	CCWGG	4 cut(s)	161, 312, 347, 646
PspGI	CCWGG	4 cut(s)	161, 312, 347, 646
PspN4I	GGNNCC	3 cut(s)	171, 341, 342
PspPI	GGNCC	4 cut(s)	169, 340, 367, 875
PspPPI	RGGWCCY	1 cut(s)	340
RsaI	GTAC	2 cut(s)	356, 836
RsaNI	GTAC	2 cut(s)	355, 835
SapI	GCTCTTC	1 cut(s)	261
SaqAI	TTAA	3 cut(s)	287, 969, 1050
SatI	GCNGC	4 cut(s)	21, 555, 642, 796
Sau3AI	GATC	2 cut(s)	760, 889
Sau96I	GGNCC	4 cut(s)	169, 340, 367, 875
SchI	GAGTC	1 cut(s)	991
ScrFI	CCNGG	6 cut(s)	49, 140, 163, 314, 349, 648
SexAI	ACCWGGT	1 cut(s)	312
SfaNI	GCATC	1 cut(s)	583
SinI	GGWCC	4 cut(s)	169, 340, 367, 875
SmlI	CTYRAG	2 cut(s)	975, 994
SmoI	CTYRAG	2 cut(s)	975, 994
SphI	GCATGC	1 cut(s)	136
Sse9I	AATT	5 cut(s)	155, 195, 607, 623, 694
SsiI	CCGC	6 cut(s)	28, 130, 206, 370, 461, 619
SspI	AATATT	2 cut(s)	967, 1028
SspMI	CTAG	1 cut(s)	558
StyD4I	CCNGG	6 cut(s)	47, 138, 161, 312, 347, 646
TaaI	ACNGT	2 cut(s)	223, 423
TaiI	ACGT	3 cut(s)	102, 736, 1044
TaqI	TCGA	3 cut(s)	79, 123, 897
TasI	AATT	5 cut(s)	155, 195, 607, 623, 694
TatI	WGTACW	1 cut(s)	834
TfiI	GAWTC	5 cut(s)	455, 482, 668, 773, 940
Tru1I	TTAA	3 cut(s)	287, 969, 1050
Tru9I	TTAA	3 cut(s)	287, 969, 1050
TseI	GCWGC	4 cut(s)	20, 554, 641, 795
TspDTI	ATGAA	2 cut(s)	453, 901
TspGWI	ACGGA	2 cut(s)	282, 913
Van91I	CCANNNNNTGG	1 cut(s)	653
VpaK11BI	GGWCC	4 cut(s)	169, 340, 367, 875
XapI	RAATTY	3 cut(s)	155, 195, 694
XceI	RCATGY	2 cut(s)	136, 400
XspI	CTAG	1 cut(s)	558
ZraI	GACGTC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.