pycom08g11490

xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0029298
Physical Location & Seq
Forward (+)
9708344 .. 9709210
867 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 816 bp
ATGCCAGTCCAAATTAGTTGTAATGATATTAGTTTGAAAATTAATAGTATATTCTCTCAACTCTCTCTTCCTCTTCCTCCATCTATTAGCCATAGCCATCACTGCACTTGCAGGTTGAGACCTTGTTGGTCTGGATTTTATCATGTGCCTTATCTAACGTCGTTTCATTCGCCCAATTTGTCCTTATTGGAGACGTGGTTGCAACAGGCTAGGCGGTCCCACCGCACCACGCTTATGATGTCCACCGGCGGTGGCAGTGTCGGAAATAATCCGAACATTAGGAGGAGTATCAGGAACGAGTGCGAAAACAACACCAAAGCAAATAATGCAACGTTAAACAACAATTTAGGGAGGTTTAGAAGTGGGGGTGCTGAGTACACAAAGCTGTGTGACATTTTGGATTGCTCCCATGGGATATGTGAGCATGACCCAATTAGGTTCATGAGGCCAATGTTGCAGGCTAGTTTCTGCCTACAACCTCCGGGTGACACCCCGACGAGGCGATCCACATTCGATAGCATTGTGGCTGACTGCATCCCCGATGATCAGTACGGAGAGTTCTCGGTGTTTATACCGAAGGAGGATGTGGTGTTCAAGGAAACTAGGGTTTTGGATGTGCTTAGGAGCATTCCTAGGGCTAGAGTTAGGAGGATGAGGGAGAAGGTGTTGGAGATGATACCAAGAGTTATGTATAGAAGGCATGGGAGCTCAATGGGATTGAGAGCTAAGAAGGATGCTATCGATCTTGCAATTGATGGTGTTTTGAACAAGATTAAATCTAGGGTTCTAGTTCAACCTAGGGTTTTCCCTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

272

Amino Acids

30.81

Weight (kDa)

9.57

Isoelectric Point (pI)

56.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 47 - 180 4.2e-19 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029298)

Species Orthologous Gene IDs
pyrus_communis pycom06g06000 pycom08g11490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 102
AciI CCGC 3 cut(s) 214, 223, 249
AclI AACGTT 1 cut(s) 332
AclWI GGATC 1 cut(s) 498
AfaI GTAC 2 cut(s) 377, 551
AfiI CCNNNNNNNGG 1 cut(s) 498
AgsI TTSAA 4 cut(s) 37, 595, 766, 794
AjiI CACGTC 1 cut(s) 195
AloI GAACNNNNNNTCC 2 cut(s) 575, 607
AluBI AGCT 3 cut(s) 385, 708, 725
AluI AGCT 3 cut(s) 385, 708, 725
Alw21I GWGCWC 1 cut(s) 710
Alw26I GTCTC 2 cut(s) 112, 185
AlwI GGATC 1 cut(s) 498
AoxI GGCC 1 cut(s) 446
AseI ATTAAT 1 cut(s) 42
AspA2I CCTAGG 2 cut(s) 632, 797
AspS9I GGNCC 1 cut(s) 216
AsuC2I CCSGG 1 cut(s) 483
AsuHPI GGTGA 1 cut(s) 497
AvaII GGWCC 1 cut(s) 216
AvrII CCTAGG 2 cut(s) 632, 797
BanII GRGCYC 1 cut(s) 710
Bbv12I GWGCWC 1 cut(s) 710
BccI CCATC 3 cut(s) 88, 105, 749
BclI TGATCA 1 cut(s) 544
BcnI CCSGG 1 cut(s) 483
BcoDI GTCTC 2 cut(s) 112, 185
BfaI CTAG 8 cut(s) 210, 462, 603, 633, 639, 780, 788, 798
BfuAI ACCTGC 1 cut(s) 102
BlnI CCTAGG 2 cut(s) 632, 797
Bme1390I CCNGG 1 cut(s) 483
Bme18I GGWCC 1 cut(s) 216
BmgBI CACGTC 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 216
BmiI GGNNCC 1 cut(s) 218
BmrFI CCNGG 1 cut(s) 483
BmsI GCATC 2 cut(s) 543, 724
Bpu10I CCTNAGC 1 cut(s) 620
BpuMI CCSGG 1 cut(s) 483
Bsa29I ATCGAT 1 cut(s) 741
BsaI GGTCTC 1 cut(s) 112
BsaJI CCNNGG 3 cut(s) 409, 632, 797
BsaXI ACNNNNNCTCC 4 cut(s) 182, 212, 650, 680
Bsc4I CCNNNNNNNGG 1 cut(s) 498
Bse118I RCCGGY 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 5
BseCI ATCGAT 1 cut(s) 741
BseDI CCNNGG 3 cut(s) 409, 632, 797
BseGI GGATG 5 cut(s) 534, 589, 619, 657, 739
BseLI CCNNNNNNNGG 1 cut(s) 498
BseMII CTCAG 1 cut(s) 363
BseNI ACTGG 1 cut(s) 5
BseRI GAGGAG 1 cut(s) 298
BsgI GTGCAG 1 cut(s) 88
BshFI GGCC 1 cut(s) 448
BshVI ATCGAT 1 cut(s) 741
BsiHKAI GWGCWC 1 cut(s) 710
BsiSI CCGG 2 cut(s) 246, 482
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 1 cut(s) 498
BsmAI GTCTC 2 cut(s) 112, 185
BsmBI CGTCTC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 202
BsmI GAATGC 1 cut(s) 627
BsnI GGCC 1 cut(s) 448
Bso31I GGTCTC 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 710
Bsp143I GATC 3 cut(s) 503, 544, 742
Bsp19I CCATGG 1 cut(s) 409
BspACI CCGC 3 cut(s) 214, 223, 249
BspANI GGCC 1 cut(s) 448
BspCNI CTCAG 1 cut(s) 364
BspDI ATCGAT 1 cut(s) 741
BspHI TCATGA 1 cut(s) 441
BspLI GGNNCC 1 cut(s) 218
BspMI ACCTGC 1 cut(s) 102
BspPI GGATC 1 cut(s) 498
BspTNI GGTCTC 1 cut(s) 112
BsrFI RCCGGY 1 cut(s) 245
BsrI ACTGG 1 cut(s) 5
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 3 cut(s) 409, 632, 797
BssMI GATC 3 cut(s) 503, 544, 742
BssT1I CCWWGG 3 cut(s) 409, 632, 797
Bst6I CTCTTC 2 cut(s) 72, 78
BstAPI GCANNNNNTGC 1 cut(s) 326
BstC8I GCNNGC 1 cut(s) 459
BstDEI CTNAG 3 cut(s) 372, 620, 726
BstDSI CCRYGG 1 cut(s) 409
BstF5I GGATG 5 cut(s) 534, 589, 619, 657, 739
BstKTI GATC 3 cut(s) 506, 547, 745
BstMAI GTCTC 2 cut(s) 112, 185
BstMBI GATC 3 cut(s) 503, 544, 742
BstMWI GCNNNNNNNGC 3 cut(s) 102, 326, 454
BstSCI CCNGG 1 cut(s) 481
Bsu15I ATCGAT 1 cut(s) 741
BsuRI GGCC 1 cut(s) 448
BsuTUI ATCGAT 1 cut(s) 741
BtgI CCRYGG 1 cut(s) 409
BtrI CACGTC 1 cut(s) 195
BtsCI GGATG 5 cut(s) 534, 589, 619, 657, 739
BtsI GCAGTG 2 cut(s) 100, 262
BtsIMutI CAGTG 2 cut(s) 100, 262
BveI ACCTGC 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 459
CciI TCATGA 1 cut(s) 441
Cfr10I RCCGGY 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 216
ClaI ATCGAT 1 cut(s) 741
Csp6I GTAC 2 cut(s) 376, 550
CviAII CATG 5 cut(s) 143, 410, 425, 442, 701
CviQI GTAC 2 cut(s) 376, 550
DdeI CTNAG 3 cut(s) 372, 620, 726
DpnI GATC 3 cut(s) 505, 546, 744
DpnII GATC 3 cut(s) 503, 544, 742
Eam1104I CTCTTC 2 cut(s) 72, 78
EarI CTCTTC 2 cut(s) 72, 78
Ecl136II GAGCTC 1 cut(s) 708
Eco130I CCWWGG 3 cut(s) 409, 632, 797
Eco24I GRGCYC 1 cut(s) 710
Eco31I GGTCTC 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 216
Eco53kI GAGCTC 1 cut(s) 708
EcoICRI GAGCTC 1 cut(s) 708
EcoT14I CCWWGG 3 cut(s) 409, 632, 797
EcoT38I GRGCYC 1 cut(s) 710
ErhI CCWWGG 3 cut(s) 409, 632, 797
Esp3I CGTCTC 1 cut(s) 185
FaeI CATG 5 cut(s) 146, 413, 428, 445, 704
FaqI GGGAC 1 cut(s) 202
FatI CATG 5 cut(s) 142, 409, 424, 441, 700
FbaI TGATCA 1 cut(s) 544
FokI GGATG 5 cut(s) 521, 596, 626, 664, 746
FriOI GRGCYC 1 cut(s) 710
FspBI CTAG 8 cut(s) 210, 462, 603, 633, 639, 780, 788, 798
HaeIII GGCC 1 cut(s) 448
HapII CCGG 2 cut(s) 246, 482
Hin1II CATG 5 cut(s) 146, 413, 428, 445, 704
HpaII CCGG 2 cut(s) 246, 482
HphI GGTGA 1 cut(s) 497
Hpy166II GTNNAC 2 cut(s) 243, 378
Hpy188I TCNGA 2 cut(s) 263, 273
Hpy188III TCNNGA 3 cut(s) 132, 292, 442
Hpy8I GTNNAC 2 cut(s) 243, 378
Hpy99I CGWCG 2 cut(s) 163, 499
HpyAV CCTTC 4 cut(s) 571, 655, 690, 724
HpyCH4IV ACGT 3 cut(s) 158, 194, 332
HpyCH4V TGCA 7 cut(s) 105, 111, 202, 329, 457, 534, 749
HpyF10VI GCNNNNNNNGC 3 cut(s) 102, 326, 454
HpyF3I CTNAG 3 cut(s) 372, 620, 726
HpySE526I ACGT 3 cut(s) 158, 194, 332
Hsp92II CATG 5 cut(s) 146, 413, 428, 445, 704
Ksp22I TGATCA 1 cut(s) 544
Kzo9I GATC 3 cut(s) 503, 544, 742
LmnI GCTCC 3 cut(s) 410, 624, 705
LpnPI CCDG 8 cut(s) 18, 97, 117, 191, 259, 277, 443, 495
LweI GCATC 2 cut(s) 543, 724
MaeI CTAG 8 cut(s) 210, 462, 603, 633, 639, 780, 788, 798
MaeII ACGT 3 cut(s) 158, 194, 332
MaeIII GTNAC 2 cut(s) 389, 485
MalI GATC 3 cut(s) 505, 546, 744
MboI GATC 3 cut(s) 503, 544, 742
MboII GAAGA 2 cut(s) 59, 65
MfeI CAATTG 1 cut(s) 750
MhlI GDGCHC 1 cut(s) 710
MluCI AATT 6 cut(s) 12, 39, 175, 343, 432, 750
MmeI TCCRAC 2 cut(s) 241, 648
MseI TTAA 3 cut(s) 42, 335, 774
MslI CAYNNNNRTG 1 cut(s) 233
MspI CCGG 2 cut(s) 246, 482
MspR9I CCNGG 1 cut(s) 483
MunI CAATTG 1 cut(s) 750
Mva1269I GAATGC 1 cut(s) 627
MwoI GCNNNNNNNGC 3 cut(s) 102, 326, 454
NciI CCSGG 1 cut(s) 483
NcoI CCATGG 1 cut(s) 409
NdeII GATC 3 cut(s) 503, 544, 742
NlaIII CATG 5 cut(s) 146, 413, 428, 445, 704
NlaIV GGNNCC 1 cut(s) 218
NmuCI GTSAC 2 cut(s) 389, 485
PagI TCATGA 1 cut(s) 441
PctI GAATGC 1 cut(s) 627
PshBI ATTAAT 1 cut(s) 42
Psp124BI GAGCTC 1 cut(s) 710
Psp1406I AACGTT 1 cut(s) 332
PspN4I GGNNCC 1 cut(s) 218
PspPI GGNCC 1 cut(s) 216
PsrI GAACNNNNNNTAC 2 cut(s) 542, 574
RsaI GTAC 2 cut(s) 377, 551
RsaNI GTAC 2 cut(s) 376, 550
RseI CAYNNNNRTG 1 cut(s) 233
SacI GAGCTC 1 cut(s) 710
SaqAI TTAA 3 cut(s) 42, 335, 774
Sau3AI GATC 3 cut(s) 503, 544, 742
Sau96I GGNCC 1 cut(s) 216
ScrFI CCNGG 1 cut(s) 483
SduI GDGCHC 1 cut(s) 710
SfaNI GCATC 2 cut(s) 543, 724
SgrAI CRCCGGYG 1 cut(s) 245
SinI GGWCC 1 cut(s) 216
SmiMI CAYNNNNRTG 1 cut(s) 233
Sse9I AATT 6 cut(s) 12, 39, 175, 343, 432, 750
SsiI CCGC 3 cut(s) 214, 223, 249
SspMI CTAG 8 cut(s) 210, 462, 603, 633, 639, 780, 788, 798
SstI GAGCTC 1 cut(s) 710
StyD4I CCNGG 1 cut(s) 481
StyI CCWWGG 3 cut(s) 409, 632, 797
TaiI ACGT 3 cut(s) 161, 197, 335
TaqI TCGA 2 cut(s) 513, 741
TasI AATT 6 cut(s) 12, 39, 175, 343, 432, 750
TatI WGTACW 1 cut(s) 375
Tru1I TTAA 3 cut(s) 42, 335, 774
Tru9I TTAA 3 cut(s) 42, 335, 774
TscAI CASTG 2 cut(s) 107, 262
TseFI GTSAC 2 cut(s) 389, 485
Tsp45I GTSAC 2 cut(s) 389, 485
TspDTI ATGAA 2 cut(s) 155, 430
TspGWI ACGGA 1 cut(s) 567
TspRI CASTG 2 cut(s) 107, 262
VpaK11BI GGWCC 1 cut(s) 216
VspI ATTAAT 1 cut(s) 42
XmaJI CCTAGG 2 cut(s) 632, 797
XspI CTAG 8 cut(s) 210, 462, 603, 633, 639, 780, 788, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.