Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0029348

Physical Location & Seq

Genomic Coordinates Reverse (-)

10264871 .. 10266619

Gene Structure 1749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGACCCTCCATTTCTCAACCACTAATTGGTTCGGACTATTTACAATCCCAACCCTTCCCCCCCTCTCTCTCTCTCTGCTCGTCGTCCCTGCAAGCAAAACTCTCGGTGGAGAAATGGGGGCCGGGCGCGAGGTCCAAAGCTCGCTGGACGGGCTGAGAGACAAGAACGTGATGCAGCTGAAGAAGCTCAACACTGCCCTCTTCCCAGTTCGCTACAACGACAAGTACTACGCCGATGCCCTTGCTTCCGGCGATTTCACCAAGCTAGCATATTTCAGTGATATATGCGTTGGTGCAATTGCATGCCGGCTTGAGAAAAAGGAAAATGGAGCTGTCCGTGTGTACATCATGACATTGGGAGTTTTAGCACCGTACCGTGGACTAGGCATTGGTAAGCAATCTCCGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007064 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022402 GO:0031365 GO:0034085 GO:0034087 GO:0034212 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051276 GO:0051604 GO:0052858 GO:0061733 GO:0070601 GO:0071704 GO:0071840 GO:0071962 GO:0098813 GO:0140014 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

137

Amino Acids

14.82

Weight (kDa)

9.45

Isoelectric Point (pI)

23.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029348)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g11990
rosa_samantha	Rh6AG394600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	27
AccII	CGCG	1 cut(s)	129
AcuI	CTGAAG	1 cut(s)	200
AfaI	GTAC	3 cut(s)	227, 344, 374
AfiI	CCNNNNNNNGG	2 cut(s)	27, 377
AluBI	AGCT	5 cut(s)	141, 178, 187, 265, 332
AluI	AGCT	5 cut(s)	141, 178, 187, 265, 332
Alw26I	GTCTC	1 cut(s)	153
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	175
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	2 cut(s)	120, 133
AsuC2I	CCSGG	1 cut(s)	124
AsuHPI	GGTGA	1 cut(s)	250
AsuNHI	GCTAGC	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	187
BcgI	CGANNNNNNTGC	4 cut(s)	85, 119, 224, 258
BcnI	CCSGG	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	2 cut(s)	266, 383
BisI	GCNGC	1 cut(s)	176
BlsI	GCNGC	1 cut(s)	177
BmcAI	AGTACT	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	124
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	2 cut(s)	120, 133
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	124
BmrI	ACTGGG	1 cut(s)	200
BmsI	GCATC	2 cut(s)	162, 226
BmtI	GCTAGC	1 cut(s)	269
BmuI	ACTGGG	1 cut(s)	200
BpuEI	CTTGAG	1 cut(s)	332
BpuMI	CCSGG	1 cut(s)	124
BsaJI	CCNNGG	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 377
Bse118I	RCCGGY	1 cut(s)	306
Bse1I	ACTGG	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	376
BseLI	CCNNNNNNNGG	2 cut(s)	27, 377
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	187
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	1 cut(s)	122
BsiSI	CCGG	3 cut(s)	123, 249, 307
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	2 cut(s)	27, 377
BsmAI	GTCTC	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	122
Bsp1407I	TGTACA	1 cut(s)	342
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	147
BspFNI	CGCG	1 cut(s)	129
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	121
BspOI	GCTAGC	1 cut(s)	269
BsrFI	RCCGGY	1 cut(s)	306
BsrGI	TGTACA	1 cut(s)	342
BsrI	ACTGG	1 cut(s)	206
BssAI	RCCGGY	1 cut(s)	306
BssECI	CCNNGG	1 cut(s)	376
Bst4CI	ACNGT	2 cut(s)	372, 377
Bst6I	CTCTTC	1 cut(s)	206
BstAUI	TGTACA	1 cut(s)	342
BstC8I	GCNNGC	5 cut(s)	94, 143, 267, 304, 308
BstDEI	CTNAG	1 cut(s)	155
BstDSI	CCRYGG	1 cut(s)	376
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	129
BstMAI	GTCTC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 184
BstNSI	RCATGY	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	122
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	187
BsuRI	GGCC	1 cut(s)	122
BtgI	CCRYGG	1 cut(s)	376
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	2 cut(s)	192, 283
Cac8I	GCNNGC	5 cut(s)	94, 143, 267, 304, 308
CciI	TCATGA	1 cut(s)	348
CfoI	GCGC	1 cut(s)	129
Cfr10I	RCCGGY	1 cut(s)	306
Cfr13I	GGNCC	2 cut(s)	120, 133
Csp6I	GTAC	3 cut(s)	226, 343, 373
CviAII	CATG	2 cut(s)	303, 349
CviJI	RGCY	8 cut(s)	122, 141, 154, 178, 187, 265, 310, 332
CviKI_1	RGCY	8 cut(s)	122, 141, 154, 178, 187, 265, 310, 332
CviQI	GTAC	3 cut(s)	226, 343, 373
DdeI	CTNAG	1 cut(s)	155
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	200
FaeI	CATG	2 cut(s)	306, 352
FaiI	YATR	5 cut(s)	271, 284, 286, 304, 350
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	2 cut(s)	302, 348
Fnu4HI	GCNGC	1 cut(s)	176
Fsp4HI	GCNGC	1 cut(s)	176
FspBI	CTAG	2 cut(s)	266, 383
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	3 cut(s)	123, 249, 307
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	306, 352
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HpaII	CCGG	3 cut(s)	123, 249, 307
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	2 cut(s)	343, 380
Hpy188I	TCNGA	2 cut(s)	35, 405
Hpy188III	TCNNGA	1 cut(s)	349
Hpy8I	GTNNAC	2 cut(s)	343, 380
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	1 cut(s)	65
HpyCH4III	ACNGT	2 cut(s)	372, 377
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	4 cut(s)	92, 175, 296, 302
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 184
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	306, 352
HspAI	GCGC	1 cut(s)	127
KroI	GCCGGC	1 cut(s)	306
KroNI	GCCGGC	1 cut(s)	308
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	6 cut(s)	102, 131, 136, 219, 262, 320
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	2 cut(s)	162, 226
MaeI	CTAG	2 cut(s)	266, 383
MaeII	ACGT	1 cut(s)	168
MboII	GAAGA	2 cut(s)	193, 193
MfeI	CAATTG	1 cut(s)	297
MluCI	AATT	2 cut(s)	25, 297
MnlI	CCTC	4 cut(s)	17, 74, 124, 209
MroNI	GCCGGC	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	178
MspI	CCGG	3 cut(s)	123, 249, 307
MspR9I	CCNGG	1 cut(s)	124
MunI	CAATTG	1 cut(s)	297
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	151, 184
NaeI	GCCGGC	1 cut(s)	308
NciI	CCSGG	1 cut(s)	124
NgoMIV	GCCGGC	1 cut(s)	306
NheI	GCTAGC	1 cut(s)	265
NlaIII	CATG	2 cut(s)	306, 352
NlaIV	GGNNCC	1 cut(s)	121
NspI	RCATGY	1 cut(s)	306
PaeI	GCATGC	1 cut(s)	306
PagI	TCATGA	1 cut(s)	348
PdiI	GCCGGC	1 cut(s)	308
PflMI	CCANNNNNTGG	1 cut(s)	27
PkrI	GCNGC	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	121
PspPI	GGNCC	2 cut(s)	120, 133
PvuII	CAGCTG	1 cut(s)	178
RsaI	GTAC	3 cut(s)	227, 344, 374
RsaNI	GTAC	3 cut(s)	226, 343, 373
SatI	GCNGC	1 cut(s)	176
Sau96I	GGNCC	2 cut(s)	120, 133
ScaI	AGTACT	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	124
SetI	ASST	7 cut(s)	135, 143, 171, 180, 189, 267, 334
SfaNI	GCATC	2 cut(s)	162, 226
SinI	GGWCC	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
SphI	GCATGC	1 cut(s)	306
Sse9I	AATT	2 cut(s)	25, 297
SspMI	CTAG	2 cut(s)	266, 383
StyD4I	CCNGG	1 cut(s)	122
TaaI	ACNGT	2 cut(s)	372, 377
TaiI	ACGT	1 cut(s)	171
TasI	AATT	2 cut(s)	25, 297
TatI	WGTACW	2 cut(s)	225, 342
TscAI	CASTG	2 cut(s)	199, 283
TseI	GCWGC	1 cut(s)	175
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	2 cut(s)	199, 283
Van91I	CCANNNNNTGG	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	133
XceI	RCATGY	1 cut(s)	306
XspI	CTAG	2 cut(s)	266, 383
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.