Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0029348

Physical Location & Seq

Genomic Coordinates Reverse (-)

59263416 .. 59266624

Gene Structure 3209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG394600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGGGGCTGGGAAGCGTGAGATCCAAACCTCACTGGACGGACTGAGGGACAAGAACTTGATGCAGCTCAAGAAGCTCAACACCGCTCTCTTCCCTGTTCGCTACAACGACAGATACTACACCGACGCCCTCGCCGCCGGCGACTTCTCTAAACTAGCATATTACAGTGATATATGTGTTGGTTCAATTGCTTGCCGGCGTGAGAAGAAGGAGGGTGGGGTTGTCCGTGTGTACATCATGACACTGGGAGTTTTGGCACCATATCGTGGGATAGGCATTGGTAAGCATGTACAAGCTTTCTTAAAATTTTGTAGGGAAATCTTACTACTTTGGTTGAAATGCATGGTGCATTCTTCATTAAATTTGCCTTCTGGATACAATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007064 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022402 GO:0031365 GO:0034085 GO:0034087 GO:0034212 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051276 GO:0051604 GO:0052858 GO:0061733 GO:0070601 GO:0071704 GO:0071840 GO:0071962 GO:0098813 GO:0140014 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

128

Amino Acids

14.41

Weight (kDa)

9.56

Isoelectric Point (pI)

27.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029348)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g11990
rosa_samantha	Rh6AG394600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	256
AccB7I	CCANNNNNTGG	1 cut(s)	266
AccBSI	CCGCTC	1 cut(s)	86
AciI	CCGC	2 cut(s)	84, 135
AclWI	GGATC	1 cut(s)	16
AcsI	RAATTY	2 cut(s)	305, 361
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	2 cut(s)	233, 291
AfiI	CCNNNNNNNGG	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	186, 337
AluBI	AGCT	3 cut(s)	67, 76, 296
AluI	AGCT	3 cut(s)	67, 76, 296
AlwI	GGATC	1 cut(s)	16
ApeKI	GCWGC	1 cut(s)	64
ApoI	RAATTY	2 cut(s)	305, 361
BanI	GGYRCC	1 cut(s)	256
BbvI	GCAGC	1 cut(s)	76
BciVI	GTATCC	1 cut(s)	368
BfaI	CTAG	1 cut(s)	155
BfuI	GTATCC	1 cut(s)	368
BisI	GCNGC	2 cut(s)	65, 135
BlsI	GCNGC	2 cut(s)	66, 136
BmiI	GGNNCC	1 cut(s)	258
BmrI	ACTGGG	1 cut(s)	254
BmsI	GCATC	1 cut(s)	51
BmuI	ACTGGG	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	53
BsaHI	GRCGYC	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse118I	RCCGGY	2 cut(s)	137, 195
Bse1I	ACTGG	2 cut(s)	39, 249
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	2 cut(s)	39, 249
BseXI	GCAGC	1 cut(s)	76
BseYI	CCCAGC	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	256
BsiSI	CCGG	2 cut(s)	138, 196
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmFI	GGGAC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	349
Bsp1407I	TGTACA	2 cut(s)	231, 289
Bsp143I	GATC	1 cut(s)	21
BspACI	CCGC	2 cut(s)	84, 135
BspCNI	CTCAG	1 cut(s)	36
BspHI	TCATGA	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	258
BspPI	GGATC	1 cut(s)	16
BspT107I	GGYRCC	1 cut(s)	256
BsrBI	CCGCTC	1 cut(s)	86
BsrFI	RCCGGY	2 cut(s)	137, 195
BsrGI	TGTACA	2 cut(s)	231, 289
BsrI	ACTGG	2 cut(s)	39, 249
BssAI	RCCGGY	2 cut(s)	137, 195
BssMI	GATC	1 cut(s)	21
BssNI	GRCGYC	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	167
Bst6I	CTCTTC	1 cut(s)	95
BstACI	GRCGYC	1 cut(s)	126
BstAUI	TGTACA	2 cut(s)	231, 289
BstC8I	GCNNGC	3 cut(s)	139, 193, 197
BstDEI	CTNAG	1 cut(s)	44
BstKTI	GATC	1 cut(s)	24
BstMBI	GATC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 134
BstNSI	RCATGY	1 cut(s)	290
BstV1I	GCAGC	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	21
BstYI	RGATCY	1 cut(s)	21
BsuI	GTATCC	1 cut(s)	368
BtsIMutI	CAGTG	3 cut(s)	32, 172, 242
Cac8I	GCNNGC	3 cut(s)	139, 193, 197
CciI	TCATGA	1 cut(s)	237
Cfr10I	RCCGGY	2 cut(s)	137, 195
CseI	GACGC	1 cut(s)	134
Csp6I	GTAC	2 cut(s)	232, 290
CviAII	CATG	3 cut(s)	238, 287, 343
CviJI	RGCY	4 cut(s)	8, 67, 76, 296
CviKI_1	RGCY	4 cut(s)	8, 67, 76, 296
CviQI	GTAC	2 cut(s)	232, 290
DdeI	CTNAG	1 cut(s)	44
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
EcoT22I	ATGCAT	1 cut(s)	344
FaeI	CATG	3 cut(s)	241, 290, 346
FaiI	YATR	7 cut(s)	160, 173, 175, 239, 262, 288, 344
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	3 cut(s)	237, 286, 342
Fnu4HI	GCNGC	2 cut(s)	65, 135
Fsp4HI	GCNGC	2 cut(s)	65, 135
FspBI	CTAG	1 cut(s)	155
GluI	GCNGC	2 cut(s)	65, 135
GsaI	CCCAGC	1 cut(s)	12
HapII	CCGG	2 cut(s)	138, 196
HgaI	GACGC	1 cut(s)	134
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	3 cut(s)	241, 290, 346
HindIII	AAGCTT	1 cut(s)	294
HpaII	CCGG	2 cut(s)	138, 196
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188III	TCNNGA	3 cut(s)	70, 238, 372
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	2 cut(s)	202, 378
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4V	TGCA	3 cut(s)	64, 342, 349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 134
HpyF3I	CTNAG	1 cut(s)	44
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	3 cut(s)	241, 290, 346
KroI	GCCGGC	2 cut(s)	137, 195
KroNI	GCCGGC	2 cut(s)	139, 197
Kzo9I	GATC	1 cut(s)	21
LpnPI	CCDG	6 cut(s)	20, 108, 151, 209, 230, 357
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	1 cut(s)	155
MalI	GATC	1 cut(s)	23
MbiI	CCGCTC	1 cut(s)	86
MboI	GATC	1 cut(s)	21
MboII	GAAGA	3 cut(s)	82, 217, 345
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	1 cut(s)	21
MluCI	AATT	3 cut(s)	186, 305, 361
MnlI	CCTC	4 cut(s)	39, 40, 140, 205
Mph1103I	ATGCAT	1 cut(s)	344
MreI	CGCCGGCG	1 cut(s)	137
MroNI	GCCGGC	2 cut(s)	137, 195
MseI	TTAA	2 cut(s)	302, 359
MspI	CCGG	2 cut(s)	138, 196
MunI	CAATTG	1 cut(s)	186
Mva1269I	GAATGC	1 cut(s)	349
MwoI	GCNNNNNNNGC	2 cut(s)	73, 134
NaeI	GCCGGC	2 cut(s)	139, 197
NdeII	GATC	1 cut(s)	21
NgoMIV	GCCGGC	2 cut(s)	137, 195
NlaIII	CATG	3 cut(s)	241, 290, 346
NlaIV	GGNNCC	1 cut(s)	258
NsiI	ATGCAT	1 cut(s)	344
NspI	RCATGY	1 cut(s)	290
PagI	TCATGA	1 cut(s)	237
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PctI	GAATGC	1 cut(s)	349
PdiI	GCCGGC	2 cut(s)	139, 197
PflMI	CCANNNNNTGG	1 cut(s)	266
PkrI	GCNGC	2 cut(s)	66, 136
PspFI	CCCAGC	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	258
PsuI	RGATCY	1 cut(s)	21
RsaI	GTAC	2 cut(s)	233, 291
RsaNI	GTAC	2 cut(s)	232, 290
SaqAI	TTAA	2 cut(s)	302, 359
SatI	GCNGC	2 cut(s)	65, 135
Sau3AI	GATC	1 cut(s)	21
SetI	ASST	4 cut(s)	32, 69, 78, 298
SfaNI	GCATC	1 cut(s)	51
SgrAI	CRCCGGYG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	3 cut(s)	186, 305, 361
SsiI	CCGC	2 cut(s)	84, 135
SspMI	CTAG	1 cut(s)	155
TaaI	ACNGT	1 cut(s)	167
TasI	AATT	3 cut(s)	186, 305, 361
TatI	WGTACW	2 cut(s)	231, 289
TauI	GCSGC	1 cut(s)	137
Tru1I	TTAA	2 cut(s)	302, 359
Tru9I	TTAA	2 cut(s)	302, 359
TscAI	CASTG	3 cut(s)	39, 172, 249
TseI	GCWGC	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	345
TspGWI	ACGGA	2 cut(s)	54, 215
TspRI	CASTG	3 cut(s)	39, 172, 249
Van91I	CCANNNNNTGG	1 cut(s)	266
XapI	RAATTY	2 cut(s)	305, 361
XceI	RCATGY	1 cut(s)	290
XspI	CTAG	1 cut(s)	155
Zsp2I	ATGCAT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.