Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0029352

Physical Location & Seq

Genomic Coordinates Forward (+)

13856437 .. 13857893

Gene Structure 1457 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAAGCAAATTGATCTGGATTGTGAATTTCTGGAAGCAGAGAGAATCATGGATTACAGTCTTTTGGTTGGTCTTCATTTCTACGATGGTACTACATATGACAAAATGGGGCTTTCACCATTTTATTTGCGCTCTGGACAAAAAGATTCATATCAAAATGAGAAGTTTATGCGCGGGTGTCGATTTATTGAGGCTGAGCTACAAGACATGGATCGAGTTTTGTCTGGCCGGAAACCATTGATCTGTTTAGGAGCCAATATGCCTGCAAGGGCAGAGCGGATGGCTCGAAGGAGTGACTTCGATCAGTACACACCTGGTGGGTTCAGCCATTTGACCCCTTCACGCAGCGGTGAAATCTATGACGTAGTCCTTTACTTTGGGGTCATCGACATTTTACAAGACTACGATATCAGCAAGAAGTTAGAGCATGCATATAAATCATTGCAAGCCGACCCAACTTCGATCTCAGCTGTTGATCCGAAGCATTACTCAAAAAGGTTCAGGGATTTCATCGGAGGAATTTTCGTAGAAGACAGGTTGGATTGGATTAAAAAGATTCAACACTTGATCCTCTTCCGAGGACAGAACAGAATCTCAAGCAACGGCACGACTGGAACGGCAACCGCAGTCAGCGGACTATGGCTGGATTTTGAAGACACAGCCAAAGGTGTTGGATGTACGGGGGATTTGGGTGCTTTGTACATTCAGGGGAGATGGGGAGAGGTTTGGGTTCTGATAAAATTTTCTCCTTTTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003779 GO:0003785 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0007275 GO:0008092 GO:0008150 GO:0008152 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009791 GO:0009958 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0016020 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0022414 GO:0022622 GO:0030258 GO:0032501 GO:0032502 GO:0040007 GO:0044237 GO:0044238 GO:0044255 GO:0044464 GO:0044877 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051015 GO:0071704 GO:0071944 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

MORN PIP5K

Protein Analysis

253

Amino Acids

28.79

Weight (kDa)

6.23

Isoelectric Point (pI)

46.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIP5K	PF01504	1 - 172	3.4e-35	Phosphatidylinositol-4-phosphate 5-Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029352)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g14590
rosa_samantha	Rh6DG361100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	277
AccII	CGCG	1 cut(s)	174
AciI	CCGC	5 cut(s)	174, 277, 348, 624, 633
AclWI	GGATC	3 cut(s)	219, 470, 562
AcoI	YGGCCR	1 cut(s)	226
AcsI	RAATTY	3 cut(s)	26, 519, 740
AdeI	CACNNNGTG	1 cut(s)	317
AfaI	GTAC	4 cut(s)	91, 308, 679, 701
AgsI	TTSAA	2 cut(s)	560, 653
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	2 cut(s)	199, 470
AluI	AGCT	2 cut(s)	199, 470
AlwI	GGATC	3 cut(s)	219, 470, 562
AoxI	GGCC	1 cut(s)	226
ApeKI	GCWGC	1 cut(s)	345
ApoI	RAATTY	3 cut(s)	26, 519, 740
AspLEI	GCGC	2 cut(s)	132, 174
AsuHPI	GGTGA	2 cut(s)	108, 362
BbsI	GAAGAC	3 cut(s)	65, 537, 660
BbvI	GCAGC	1 cut(s)	357
BccI	CCATC	3 cut(s)	80, 274, 708
BceAI	ACGGC	2 cut(s)	619, 633
BciT130I	CCWGG	1 cut(s)	315
BisI	GCNGC	1 cut(s)	346
BlpI	GCTNAGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	347
Bme1390I	CCNGG	1 cut(s)	315
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	1 cut(s)	315
BpiI	GAAGAC	3 cut(s)	65, 537, 660
Bpu1102I	GCTNAGC	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	580
BsaBI	GATNNNNATC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	577
Bse1I	ACTGG	1 cut(s)	616
Bse3DI	GCAATG	1 cut(s)	440
Bse8I	GATNNNNATC	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	577
BseGI	GGATG	2 cut(s)	285, 680
BseJI	GATNNNNATC	1 cut(s)	150
BseMI	GCAATG	1 cut(s)	440
BseMII	CTCAG	2 cut(s)	186, 480
BseNI	ACTGG	1 cut(s)	616
BseXI	GCAGC	1 cut(s)	357
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	229
BsnI	GGCC	1 cut(s)	228
Bsp1407I	TGTACA	1 cut(s)	699
Bsp143I	GATC	7 cut(s)	13, 211, 240, 301, 462, 475, 567
Bsp1720I	GCTNAGC	1 cut(s)	195
BspACI	CCGC	5 cut(s)	174, 277, 348, 624, 633
BspANI	GGCC	1 cut(s)	228
BspCNI	CTCAG	2 cut(s)	187, 479
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	253
BspPI	GGATC	3 cut(s)	219, 470, 562
BsrBI	CCGCTC	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	440
BsrGI	TGTACA	1 cut(s)	699
BsrI	ACTGG	1 cut(s)	616
BssECI	CCNNGG	1 cut(s)	577
BssMI	GATC	7 cut(s)	13, 211, 240, 301, 462, 475, 567
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	578
BstAUI	TGTACA	1 cut(s)	699
BstC8I	GCNNGC	3 cut(s)	264, 429, 447
BstDEI	CTNAG	2 cut(s)	195, 466
BstF5I	GGATG	2 cut(s)	285, 680
BstFNI	CGCG	1 cut(s)	174
BstHHI	GCGC	2 cut(s)	132, 174
BstKTI	GATC	7 cut(s)	16, 214, 243, 304, 465, 478, 570
BstMBI	GATC	7 cut(s)	13, 211, 240, 301, 462, 475, 567
BstNI	CCWGG	1 cut(s)	315
BstNSI	RCATGY	1 cut(s)	431
BstSCI	CCNGG	1 cut(s)	313
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	357
BstV2I	GAAGAC	3 cut(s)	65, 537, 660
BsuRI	GGCC	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	285, 680
Cac8I	GCNNGC	3 cut(s)	264, 429, 447
CfoI	GCGC	2 cut(s)	132, 174
CsiI	ACCWGGT	1 cut(s)	313
Csp6I	GTAC	4 cut(s)	90, 307, 678, 700
CviAII	CATG	3 cut(s)	49, 208, 428
CviQI	GTAC	4 cut(s)	90, 307, 678, 700
DdeI	CTNAG	2 cut(s)	195, 466
DpnI	GATC	7 cut(s)	15, 213, 242, 303, 464, 477, 569
DpnII	GATC	7 cut(s)	13, 211, 240, 301, 462, 475, 567
DraIII	CACNNNGTG	1 cut(s)	317
EaeI	YGGCCR	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	578
EarI	CTCTTC	1 cut(s)	578
Eco32I	GATATC	1 cut(s)	409
EcoRII	CCWGG	1 cut(s)	313
EcoRV	GATATC	1 cut(s)	409
EcoT22I	ATGCAT	1 cut(s)	433
FaeI	CATG	3 cut(s)	52, 211, 431
FatI	CATG	3 cut(s)	48, 207, 427
FauI	CCCGC	1 cut(s)	167
FauNDI	CATATG	1 cut(s)	97
Fnu4HI	GCNGC	1 cut(s)	346
FokI	GGATG	2 cut(s)	292, 687
Fsp4HI	GCNGC	1 cut(s)	346
GlaI	GCGC	2 cut(s)	131, 173
GluI	GCNGC	1 cut(s)	346
HaeIII	GGCC	1 cut(s)	228
HapII	CCGG	1 cut(s)	229
HhaI	GCGC	2 cut(s)	132, 174
Hin1II	CATG	3 cut(s)	52, 211, 431
Hin6I	GCGC	2 cut(s)	130, 172
HinP1I	GCGC	2 cut(s)	130, 172
HinfI	GANTC	4 cut(s)	45, 146, 556, 591
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	2 cut(s)	108, 362
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188I	TCNGA	4 cut(s)	480, 515, 578, 735
Hpy188III	TCNNGA	3 cut(s)	17, 32, 135
Hpy8I	GTNNAC	1 cut(s)	309
HpyAV	CCTTC	2 cut(s)	282, 348
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	3 cut(s)	266, 431, 445
HpyF3I	CTNAG	2 cut(s)	195, 466
HpySE526I	ACGT	1 cut(s)	363
Hsp92II	CATG	3 cut(s)	52, 211, 431
HspAI	GCGC	2 cut(s)	130, 172
Kzo9I	GATC	7 cut(s)	13, 211, 240, 301, 462, 475, 567
LmnI	GCTCC	1 cut(s)	251
Lsp1109I	GCAGC	1 cut(s)	357
MabI	ACCWGGT	1 cut(s)	313
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	7 cut(s)	15, 213, 242, 303, 464, 477, 569
MbiI	CCGCTC	1 cut(s)	277
MboI	GATC	7 cut(s)	13, 211, 240, 301, 462, 475, 567
MboII	GAAGA	4 cut(s)	65, 542, 565, 665
MluCI	AATT	4 cut(s)	9, 26, 519, 740
MmeI	TCCRAC	2 cut(s)	519, 652
MnlI	CCTC	5 cut(s)	184, 509, 572, 581, 715
Mph1103I	ATGCAT	1 cut(s)	433
MseI	TTAA	1 cut(s)	549
MspA1I	CMGCKG	3 cut(s)	348, 470, 633
MspI	CCGG	1 cut(s)	229
MspR9I	CCNGG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	315
MvnI	CGCG	1 cut(s)	174
NdeI	CATATG	1 cut(s)	97
NdeII	GATC	7 cut(s)	13, 211, 240, 301, 462, 475, 567
NlaIII	CATG	3 cut(s)	52, 211, 431
NlaIV	GGNNCC	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	293
NsiI	ATGCAT	1 cut(s)	433
NspI	RCATGY	1 cut(s)	431
PaeI	GCATGC	1 cut(s)	431
PfeI	GAWTC	4 cut(s)	45, 146, 556, 591
PflFI	GACNNNGTC	1 cut(s)	365
PkrI	GCNGC	1 cut(s)	347
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	253
PsyI	GACNNNGTC	1 cut(s)	365
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	4 cut(s)	91, 308, 679, 701
RsaNI	GTAC	4 cut(s)	90, 307, 678, 700
SaqAI	TTAA	1 cut(s)	549
SatI	GCNGC	1 cut(s)	346
Sau3AI	GATC	7 cut(s)	13, 211, 240, 301, 462, 475, 567
ScrFI	CCNGG	1 cut(s)	315
SetI	ASST	9 cut(s)	201, 316, 366, 472, 500, 539, 670, 726, 758
SexAI	ACCWGGT	1 cut(s)	313
SmlI	CTYRAG	1 cut(s)	595
SmoI	CTYRAG	1 cut(s)	595
SphI	GCATGC	1 cut(s)	431
Sse9I	AATT	4 cut(s)	9, 26, 519, 740
SsiI	CCGC	5 cut(s)	174, 277, 348, 624, 633
StyD4I	CCNGG	1 cut(s)	313
TaaI	ACNGT	1 cut(s)	59
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	6 cut(s)	181, 214, 286, 300, 387, 461
TasI	AATT	4 cut(s)	9, 26, 519, 740
TatI	WGTACW	2 cut(s)	306, 699
TfiI	GAWTC	4 cut(s)	45, 146, 556, 591
Tru1I	TTAA	1 cut(s)	549
Tru9I	TTAA	1 cut(s)	549
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	1 cut(s)	345
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	4 cut(s)	17, 65, 138, 499
Tth111I	GACNNNGTC	1 cut(s)	365
XapI	RAATTY	3 cut(s)	26, 519, 740
XceI	RCATGY	1 cut(s)	431
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.