Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0029352

Physical Location & Seq

Genomic Coordinates Reverse (-)

55831651 .. 55832725

Gene Structure 1075 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG361100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGGTCAGTGTGAATGTTTGACTCAAATGCTTGTGGCACTTGCAGGCCAAAAGGATTCATTTCAGAATGAAAAGTTTATGCGCGGGTGTCGGTTTCTTGAAGCTGAGCTACAAGACATGGATCGAGTTTTGTCTGGCCGGAAGCCACGGATCTGCTTAGGAGCCAACATGCCTGCAAGGGCAGAGCGGATGGCTCGAAGGAGTGACTTCGATCAGTACACCCCTGGTGGGTTCAGTCATTTGACCCCTTCACGCAGCGGTGAAATCTATGATGTAGTTCTTTACTTCGGGATAATAGACATTTTACAAGACTATGATATCAGCAAGAAGTTAGAGCATGCATATAAATCCTTGCAAGTCGACCCGACTTCAATATCAGCTGTGGATCCCAAGCTTTACTCAAAGAGGTTCCGGGATTTCATTGGAAGAATTTTCATTGAAGACAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003779 GO:0003785 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0007275 GO:0008092 GO:0008150 GO:0008152 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009791 GO:0009958 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0016020 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0022414 GO:0022622 GO:0030258 GO:0032501 GO:0032502 GO:0040007 GO:0044237 GO:0044238 GO:0044255 GO:0044464 GO:0044877 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051015 GO:0071704 GO:0071944 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

MORN PIP5K

Protein Analysis

149

Amino Acids

17.14

Weight (kDa)

7.65

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIP5K	PF01504	63 - 143	2.8e-22	Phosphatidylinositol-4-phosphate 5-Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029352)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g14590
rosa_samantha	Rh6DG361100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	187
AccI	GTMKAC	1 cut(s)	360
AccII	CGCG	1 cut(s)	84
AciI	CCGC	3 cut(s)	84, 187, 258
AclWI	GGATC	4 cut(s)	129, 158, 380, 393
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	1 cut(s)	429
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgsI	TTSAA	3 cut(s)	101, 372, 440
AjnI	CCWGG	1 cut(s)	223
AluBI	AGCT	4 cut(s)	104, 109, 380, 394
AluI	AGCT	4 cut(s)	104, 109, 380, 394
AlwI	GGATC	4 cut(s)	129, 158, 380, 393
AoxI	GGCC	2 cut(s)	46, 136
ApeKI	GCWGC	1 cut(s)	255
ApoI	RAATTY	1 cut(s)	429
AspLEI	GCGC	1 cut(s)	84
AsuC2I	CCSGG	1 cut(s)	413
AsuHPI	GGTGA	1 cut(s)	272
BamHI	GGATCC	1 cut(s)	385
BarI	GAAGNNNNNNTAC	2 cut(s)	93, 125
BbvI	GCAGC	1 cut(s)	267
BccI	CCATC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	225
BcnI	CCSGG	1 cut(s)	413
BisI	GCNGC	1 cut(s)	256
BlpI	GCTNAGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	257
Bme1390I	CCNGG	2 cut(s)	225, 413
BmiI	GGNNCC	3 cut(s)	163, 387, 410
BmrFI	CCNGG	2 cut(s)	225, 413
Bpu10I	CCTNAGC	1 cut(s)	157
Bpu1102I	GCTNAGC	1 cut(s)	105
BpuMI	CCSGG	1 cut(s)	413
BsaJI	CCNNGG	2 cut(s)	146, 223
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	2 cut(s)	146, 223
BseGI	GGATG	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	2 cut(s)	48, 138
BsiSI	CCGG	2 cut(s)	139, 412
BslI	CCNNNNNNNGG	1 cut(s)	228
BsnI	GGCC	2 cut(s)	48, 138
Bsp143I	GATC	4 cut(s)	121, 150, 211, 385
Bsp1720I	GCTNAGC	1 cut(s)	105
BspACI	CCGC	3 cut(s)	84, 187, 258
BspANI	GGCC	2 cut(s)	48, 138
BspCNI	CTCAG	1 cut(s)	97
BspFNI	CGCG	1 cut(s)	84
BspLI	GGNNCC	3 cut(s)	163, 387, 410
BspPI	GGATC	4 cut(s)	129, 158, 380, 393
BsrBI	CCGCTC	1 cut(s)	187
BssECI	CCNNGG	2 cut(s)	146, 223
BssMI	GATC	4 cut(s)	121, 150, 211, 385
Bst2UI	CCWGG	1 cut(s)	225
BstC8I	GCNNGC	3 cut(s)	46, 174, 339
BstDEI	CTNAG	2 cut(s)	105, 157
BstDSI	CCRYGG	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	195
BstFNI	CGCG	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	4 cut(s)	124, 153, 214, 388
BstMBI	GATC	4 cut(s)	121, 150, 211, 385
BstNI	CCWGG	1 cut(s)	225
BstNSI	RCATGY	2 cut(s)	172, 341
BstSCI	CCNGG	2 cut(s)	223, 411
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	267
BstX2I	RGATCY	2 cut(s)	150, 385
BstYI	RGATCY	2 cut(s)	150, 385
BsuRI	GGCC	2 cut(s)	48, 138
BtgI	CCRYGG	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	14
Cac8I	GCNNGC	3 cut(s)	46, 174, 339
CfoI	GCGC	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	3 cut(s)	118, 169, 338
CviJI	RGCY	9 cut(s)	48, 104, 109, 138, 145, 164, 194, 380, 394
CviKI_1	RGCY	9 cut(s)	48, 104, 109, 138, 145, 164, 194, 380, 394
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	2 cut(s)	105, 157
DpnI	GATC	4 cut(s)	123, 152, 213, 387
DpnII	GATC	4 cut(s)	121, 150, 211, 385
EaeI	YGGCCR	1 cut(s)	136
Eco32I	GATATC	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	223
EcoRV	GATATC	1 cut(s)	319
EcoT22I	ATGCAT	1 cut(s)	343
FaeI	CATG	3 cut(s)	121, 172, 341
FaiI	YATR	8 cut(s)	80, 119, 170, 270, 315, 339, 343, 345
FatI	CATG	3 cut(s)	117, 168, 337
FauI	CCCGC	1 cut(s)	77
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	1 cut(s)	256
FokI	GGATG	1 cut(s)	202
Fsp4HI	GCNGC	1 cut(s)	256
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	1 cut(s)	256
HaeIII	GGCC	2 cut(s)	48, 138
HapII	CCGG	2 cut(s)	139, 412
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	3 cut(s)	121, 172, 341
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	2 cut(s)	22, 56
HpaII	CCGG	2 cut(s)	139, 412
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	2 cut(s)	219, 361
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	2 cut(s)	98, 289
Hpy8I	GTNNAC	2 cut(s)	219, 361
HpyAV	CCTTC	2 cut(s)	192, 258
HpyCH4V	TGCA	4 cut(s)	44, 176, 341, 355
HpyF3I	CTNAG	2 cut(s)	105, 157
Hsp92II	CATG	3 cut(s)	121, 172, 341
HspAI	GCGC	1 cut(s)	82
Kzo9I	GATC	4 cut(s)	121, 150, 211, 385
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	8 cut(s)	30, 120, 152, 186, 210, 237, 425, 430
Lsp1109I	GCAGC	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	4 cut(s)	123, 152, 213, 387
MbiI	CCGCTC	1 cut(s)	187
MboI	GATC	4 cut(s)	121, 150, 211, 385
MboII	GAAGA	1 cut(s)	438
MflI	RGATCY	2 cut(s)	150, 385
MluCI	AATT	1 cut(s)	429
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	1 cut(s)	399
Mph1103I	ATGCAT	1 cut(s)	343
MspA1I	CMGCKG	2 cut(s)	258, 380
MspI	CCGG	2 cut(s)	139, 412
MspR9I	CCNGG	2 cut(s)	225, 413
MvaI	CCWGG	1 cut(s)	225
MvnI	CGCG	1 cut(s)	84
NciI	CCSGG	1 cut(s)	413
NdeII	GATC	4 cut(s)	121, 150, 211, 385
NlaIII	CATG	3 cut(s)	121, 172, 341
NlaIV	GGNNCC	3 cut(s)	163, 387, 410
NmuCI	GTSAC	1 cut(s)	203
NsiI	ATGCAT	1 cut(s)	343
NspI	RCATGY	2 cut(s)	172, 341
PaeI	GCATGC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	56
PfoI	TCCNGGA	1 cut(s)	411
PkrI	GCNGC	1 cut(s)	257
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	3 cut(s)	163, 387, 410
PsuI	RGATCY	2 cut(s)	150, 385
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SalI	GTCGAC	1 cut(s)	359
SatI	GCNGC	1 cut(s)	256
Sau3AI	GATC	4 cut(s)	121, 150, 211, 385
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	2 cut(s)	225, 413
SetI	ASST	6 cut(s)	106, 111, 382, 396, 410, 449
SphI	GCATGC	1 cut(s)	341
Sse9I	AATT	1 cut(s)	429
SsiI	CCGC	3 cut(s)	84, 187, 258
StyD4I	CCNGG	2 cut(s)	223, 411
TaqI	TCGA	4 cut(s)	124, 196, 210, 360
TasI	AATT	1 cut(s)	429
TatI	WGTACW	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	56
TscAI	CASTG	1 cut(s)	14
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	1 cut(s)	255
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	4 cut(s)	48, 84, 409, 424
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	1 cut(s)	14
XapI	RAATTY	1 cut(s)	429
XceI	RCATGY	2 cut(s)	172, 341
XmiI	GTMKAC	1 cut(s)	360
Zsp2I	ATGCAT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.