pycom08g18560

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
18696222 .. 18696689
468 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 327 bp
ATGGACGAAAAATGTGGTTGTTTAGACCATGCGAGGCAAATCTTTAACAAGGCAATTTGTCTGCTTGGAAGTTTGAGTTTTGCAAAAGAAGTCCACCGTCACTTATATCTAGCTGATATGAACAACGATACATCTCTCACCGATTCTTTGGTCACGACTTATTCCAAGTGTGGGAAATTAAATATGGCAGCTAATCTATTCGAGCATGCAGTTGAACGGTGTCTGACATCATGGAACACGATGAAGCTTGCATATGGGATGCACGGCAAACCCTTCAACCTTTTCCGTTGTCATCGTCAACTAATTTCTGAAACATTATTCGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

109

Amino Acids

12.3

Weight (kDa)

8.25

Isoelectric Point (pI)

28.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029354)

Species Orthologous Gene IDs
pyrus_communis pycom08g18560
rosa_laevigata RLG00000029992

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 2 cut(s) 215, 277
AluBI AGCT 3 cut(s) 113, 191, 247
AluI AGCT 3 cut(s) 113, 191, 247
ApeKI GCWGC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 130
BbvI GCAGC 1 cut(s) 200
BceAI ACGGC 1 cut(s) 280
BfaI CTAG 1 cut(s) 110
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
BmsI GCATC 1 cut(s) 249
Bsc4I CCNNNNNNNGG 1 cut(s) 171
BseGI GGATG 1 cut(s) 264
BseLI CCNNNNNNNGG 1 cut(s) 171
BseXI GCAGC 1 cut(s) 200
BslI CCNNNNNNNGG 1 cut(s) 171
Bst4CI ACNGT 2 cut(s) 98, 219
BstC8I GCNNGC 2 cut(s) 207, 249
BstF5I GGATG 1 cut(s) 264
BstNSI RCATGY 1 cut(s) 209
BstV1I GCAGC 1 cut(s) 200
BtsCI GGATG 1 cut(s) 264
Cac8I GCNNGC 2 cut(s) 207, 249
CviAII CATG 3 cut(s) 29, 206, 231
CviJI RGCY 3 cut(s) 113, 191, 247
CviKI_1 RGCY 3 cut(s) 113, 191, 247
FaeI CATG 3 cut(s) 32, 209, 234
FaiI YATR 9 cut(s) 30, 106, 119, 185, 207, 232, 253, 255, 325
FatI CATG 3 cut(s) 28, 205, 230
FauNDI CATATG 1 cut(s) 253
Fnu4HI GCNGC 1 cut(s) 189
FokI GGATG 1 cut(s) 271
Fsp4HI GCNGC 1 cut(s) 189
FspBI CTAG 1 cut(s) 110
GluI GCNGC 1 cut(s) 189
Hin1II CATG 3 cut(s) 32, 209, 234
HincII GTYRAC 1 cut(s) 299
HindII GTYRAC 1 cut(s) 299
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 1 cut(s) 143
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 2 cut(s) 94, 299
Hpy188I TCNGA 2 cut(s) 225, 310
Hpy188III TCNNGA 1 cut(s) 154
Hpy8I GTNNAC 2 cut(s) 94, 299
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 2 cut(s) 98, 219
HpyCH4V TGCA 4 cut(s) 83, 209, 251, 262
Hsp92II CATG 3 cut(s) 32, 209, 234
Lsp1109I GCAGC 1 cut(s) 200
LweI GCATC 1 cut(s) 249
MaeI CTAG 1 cut(s) 110
MaeIII GTNAC 2 cut(s) 98, 151
MluCI AATT 3 cut(s) 54, 176, 303
MnlI CCTC 1 cut(s) 27
MseI TTAA 2 cut(s) 45, 179
NdeI CATATG 1 cut(s) 253
NlaIII CATG 3 cut(s) 32, 209, 234
NmuCI GTSAC 2 cut(s) 98, 151
NspI RCATGY 1 cut(s) 209
PaeI GCATGC 1 cut(s) 209
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 1 cut(s) 190
SaqAI TTAA 2 cut(s) 45, 179
SatI GCNGC 1 cut(s) 189
SetI ASST 4 cut(s) 115, 193, 249, 282
SfaNI GCATC 1 cut(s) 249
SphI GCATGC 1 cut(s) 209
Sse9I AATT 3 cut(s) 54, 176, 303
SspMI CTAG 1 cut(s) 110
TaaI ACNGT 2 cut(s) 98, 219
TaqI TCGA 1 cut(s) 201
TasI AATT 3 cut(s) 54, 176, 303
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 2 cut(s) 45, 179
Tru9I TTAA 2 cut(s) 45, 179
TseFI GTSAC 2 cut(s) 98, 151
TseI GCWGC 1 cut(s) 188
Tsp45I GTSAC 2 cut(s) 98, 151
TspDTI ATGAA 2 cut(s) 134, 257
TspGWI ACGGA 1 cut(s) 275
XceI RCATGY 1 cut(s) 209
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.