RLG00000029992

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0029354
Physical Location & Seq
Reverse (-)
52894274 .. 52895325
1052 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029992

Sequence Viewer

Length: 624 bp
ATGCTTGGGTTGAATGCAAATGGGTTTGTGGGTTCGTCGCTTATTGGGTTGTACTCCGGATGTGGGGCTATTGGGTATGCGTATAAGGTGTCTGATGAAATTACTGACCCAGATGTTGTTGTGTACACTTCGATTATTACAGGGTATGCTCACATTGGTGATTTTCGGGGTTATGAGGCTTTCGAGATTGCTGGTCGAATGCAAAGGCAAGTCTGTGCGAGGCAAATCTTCAACAAGATAAGATATAGAGACTTGGTCTCATGGACTTCAATGATGATGGGTTATGTTCATCATGGGCATGCTGATGAAGCTATATTATTGTTCCGATTAATGCAAAGGGAGCAGGTGGAAGATGATACAGTCGCGCTGTTAACCTTGGTTCAGGCACTTTGTCAGCTTGGGTGTCTGAATCTAGTGAAGGAAGTCCACTGTCACTTATATAGAGTTAATATAGACAATGAGATATCTCTCACCAATTCTTTGATTACTACTTATTCTGAGTGTGGGAAGTTAAACATGGCTGCAAATCTTTTTGACCATGCAGTTAAACGGTATTCTACTTCATGGAGTGCAATGATACTTGCATATGGGATGCATGGAAAATGTATGGAGGCTGGTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

208

Amino Acids

23.1

Weight (kDa)

6.03

Isoelectric Point (pI)

22.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 84 - 132 7.8e-08 PPR repeat family
PPR PF01535 86 - 115 1.2e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029354)

Species Orthologous Gene IDs
pyrus_communis pycom08g18560
rosa_laevigata RLG00000029992

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 334
Acc36I ACCTGC 1 cut(s) 334
AccII CGCG 1 cut(s) 365
AccIII TCCGGA 1 cut(s) 56
AfaI GTAC 2 cut(s) 53, 125
AfiI CCNNNNNNNGG 1 cut(s) 63
AgsI TTSAA 3 cut(s) 13, 232, 270
AleI CACNNNNGTG 1 cut(s) 156
AluBI AGCT 2 cut(s) 311, 397
AluI AGCT 2 cut(s) 311, 397
Alw26I GTCTC 2 cut(s) 243, 262
Aor13HI TCCGGA 1 cut(s) 56
ApeKI GCWGC 1 cut(s) 521
AseI ATTAAT 1 cut(s) 329
AspLEI GCGC 1 cut(s) 367
AsuHPI GGTGA 2 cut(s) 170, 463
BbvI GCAGC 1 cut(s) 508
BccI CCATC 1 cut(s) 271
BcoDI GTCTC 2 cut(s) 243, 262
BfaI CTAG 1 cut(s) 413
BfuAI ACCTGC 1 cut(s) 334
BisI GCNGC 1 cut(s) 522
BlsI GCNGC 1 cut(s) 523
BmsI GCATC 1 cut(s) 582
BsaI GGTCTC 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 375
BsaWI WCCGGW 1 cut(s) 56
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse3DI GCAATG 1 cut(s) 579
BseAI TCCGGA 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 375
BseGI GGATG 2 cut(s) 65, 597
BseLI CCNNNNNNNGG 1 cut(s) 63
BseMI GCAATG 1 cut(s) 579
BseMII CTCAG 1 cut(s) 489
BseXI GCAGC 1 cut(s) 508
Bsh1236I CGCG 1 cut(s) 365
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 63
BsmAI GTCTC 2 cut(s) 243, 262
BsmI GAATGC 2 cut(s) 19, 204
Bso31I GGTCTC 1 cut(s) 262
Bsp13I TCCGGA 1 cut(s) 56
Bsp1407I TGTACA 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 490
BspEI TCCGGA 1 cut(s) 56
BspFNI CGCG 1 cut(s) 365
BspMI ACCTGC 1 cut(s) 334
BspTNI GGTCTC 1 cut(s) 262
BsrDI GCAATG 1 cut(s) 579
BsrGI TGTACA 1 cut(s) 123
BssECI CCNNGG 1 cut(s) 375
BssT1I CCWWGG 1 cut(s) 375
Bst4CI ACNGT 3 cut(s) 361, 431, 552
BstAUI TGTACA 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 300
BstDEI CTNAG 1 cut(s) 498
BstF5I GGATG 2 cut(s) 65, 597
BstFNI CGCG 1 cut(s) 365
BstHHI GCGC 1 cut(s) 367
BstMAI GTCTC 2 cut(s) 243, 262
BstMWI GCNNNNNNNGC 2 cut(s) 308, 340
BstNSI RCATGY 1 cut(s) 302
BstUI CGCG 1 cut(s) 365
BstV1I GCAGC 1 cut(s) 508
BtsCI GGATG 2 cut(s) 65, 597
BtsIMutI CAGTG 1 cut(s) 427
BveI ACCTGC 1 cut(s) 334
Cac8I GCNNGC 1 cut(s) 300
CfoI GCGC 1 cut(s) 367
Csp6I GTAC 2 cut(s) 52, 124
CviAII CATG 7 cut(s) 261, 293, 299, 517, 539, 564, 596
CviJI RGCY 6 cut(s) 68, 179, 311, 397, 521, 614
CviKI_1 RGCY 6 cut(s) 68, 179, 311, 397, 521, 614
CviQI GTAC 2 cut(s) 52, 124
DdeI CTNAG 1 cut(s) 498
Eco130I CCWWGG 1 cut(s) 375
Eco31I GGTCTC 1 cut(s) 262
Eco32I GATATC 1 cut(s) 465
EcoRV GATATC 1 cut(s) 465
EcoT14I CCWWGG 1 cut(s) 375
EcoT22I ATGCAT 1 cut(s) 597
ErhI CCWWGG 1 cut(s) 375
FaeI CATG 7 cut(s) 264, 296, 302, 520, 542, 567, 599
FatI CATG 7 cut(s) 260, 292, 298, 516, 538, 563, 595
FauNDI CATATG 1 cut(s) 586
Fnu4HI GCNGC 1 cut(s) 522
FokI GGATG 2 cut(s) 72, 604
Fsp4HI GCNGC 1 cut(s) 522
FspBI CTAG 1 cut(s) 413
GlaI GCGC 1 cut(s) 366
GluI GCNGC 1 cut(s) 522
HapII CCGG 1 cut(s) 57
HhaI GCGC 1 cut(s) 367
Hin1II CATG 7 cut(s) 264, 296, 302, 520, 542, 567, 599
Hin6I GCGC 1 cut(s) 365
HinP1I GCGC 1 cut(s) 365
HincII GTYRAC 1 cut(s) 372
HindII GTYRAC 1 cut(s) 372
HinfI GANTC 1 cut(s) 409
HpaI GTTAAC 1 cut(s) 372
HpaII CCGG 1 cut(s) 57
HphI GGTGA 2 cut(s) 170, 463
Hpy166II GTNNAC 4 cut(s) 124, 126, 372, 427
Hpy188I TCNGA 4 cut(s) 94, 326, 408, 499
Hpy188III TCNNGA 2 cut(s) 57, 184
Hpy8I GTNNAC 4 cut(s) 124, 126, 372, 427
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 1 cut(s) 412
HpyCH4III ACNGT 3 cut(s) 361, 431, 552
HpyCH4V TGCA 8 cut(s) 17, 202, 334, 524, 542, 572, 584, 595
HpyF10VI GCNNNNNNNGC 2 cut(s) 308, 340
HpyF3I CTNAG 1 cut(s) 498
Hsp92II CATG 7 cut(s) 264, 296, 302, 520, 542, 567, 599
HspAI GCGC 1 cut(s) 365
Kpn2I TCCGGA 1 cut(s) 56
KspAI GTTAAC 1 cut(s) 372
LmnI GCTCC 1 cut(s) 340
LpnPI CCDG 7 cut(s) 70, 123, 126, 177, 329, 368, 600
Lsp1109I GCAGC 1 cut(s) 508
LweI GCATC 1 cut(s) 582
MaeI CTAG 1 cut(s) 413
MaeIII GTNAC 1 cut(s) 431
MboII GAAGA 2 cut(s) 220, 362
MluCI AATT 2 cut(s) 99, 475
MnlI CCTC 3 cut(s) 169, 213, 604
Mph1103I ATGCAT 1 cut(s) 597
MroI TCCGGA 1 cut(s) 56
MseI TTAA 5 cut(s) 329, 371, 447, 512, 546
MslI CAYNNNNRTG 3 cut(s) 156, 297, 303
MspI CCGG 1 cut(s) 57
Mva1269I GAATGC 2 cut(s) 19, 204
MvnI CGCG 1 cut(s) 365
MwoI GCNNNNNNNGC 2 cut(s) 308, 340
NdeI CATATG 1 cut(s) 586
NlaIII CATG 7 cut(s) 264, 296, 302, 520, 542, 567, 599
NmuCI GTSAC 1 cut(s) 431
NsiI ATGCAT 1 cut(s) 597
NspI RCATGY 1 cut(s) 302
OliI CACNNNNGTG 1 cut(s) 156
PaeI GCATGC 1 cut(s) 302
PaqCI CACCTGC 1 cut(s) 334
PctI GAATGC 2 cut(s) 19, 204
PfeI GAWTC 1 cut(s) 409
PflFI GACNNNGTC 1 cut(s) 254
PkrI GCNGC 1 cut(s) 523
PshBI ATTAAT 1 cut(s) 329
PsyI GACNNNGTC 1 cut(s) 254
RsaI GTAC 2 cut(s) 53, 125
RsaNI GTAC 2 cut(s) 52, 124
RseI CAYNNNNRTG 3 cut(s) 156, 297, 303
SaqAI TTAA 5 cut(s) 329, 371, 447, 512, 546
SatI GCNGC 1 cut(s) 522
SetI ASST 5 cut(s) 90, 313, 348, 377, 399
SfaNI GCATC 1 cut(s) 582
SmiMI CAYNNNNRTG 3 cut(s) 156, 297, 303
SphI GCATGC 1 cut(s) 302
Sse9I AATT 2 cut(s) 99, 475
SspMI CTAG 1 cut(s) 413
StyI CCWWGG 1 cut(s) 375
TaaI ACNGT 3 cut(s) 361, 431, 552
TaqI TCGA 3 cut(s) 131, 183, 196
TasI AATT 2 cut(s) 99, 475
TatI WGTACW 2 cut(s) 51, 123
TfiI GAWTC 1 cut(s) 409
Tru1I TTAA 5 cut(s) 329, 371, 447, 512, 546
Tru9I TTAA 5 cut(s) 329, 371, 447, 512, 546
TscAI CASTG 1 cut(s) 434
TseFI GTSAC 1 cut(s) 431
TseI GCWGC 1 cut(s) 521
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 4 cut(s) 111, 278, 321, 552
TspRI CASTG 1 cut(s) 434
Tth111I GACNNNGTC 1 cut(s) 254
VspI ATTAAT 1 cut(s) 329
XceI RCATGY 1 cut(s) 302
XspI CTAG 1 cut(s) 413
Zsp2I ATGCAT 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.