pycom08g20220

HEAT repeat

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
20094370 .. 20094638
269 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 228 bp
ATGGAGCAGATCCTTTTGCTAGTCCCAGATTTGGTTAATGTATTTGCTCAAGTTGTGGCATTACCAGTTGAAACTCCTGAAGTAAAAGCACAAATCGGAAGAGCCTTTGCTCACCTGATTTCATTCTATGGCCAACAGATGCAGTCCCTTTTGAGTAACCTCTCCCCTGCTTATGCAAATGCCCTAGCCGCATTTGTCCCGAAAAGCTGGTTCAGAATGAGCCTGTGA

Protein Analysis

76

Amino Acids

8.29

Weight (kDa)

6.52

Isoelectric Point (pI)

52.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028641)

Species Orthologous Gene IDs
malus_domestica MD08G1233700.v1.1
pyrus_communis pycom08g20220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 189
AclWI GGATC 1 cut(s) 4
AcoI YGGCCR 1 cut(s) 130
AcuI CTGAAG 1 cut(s) 99
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 1 cut(s) 71
AluBI AGCT 1 cut(s) 207
AluI AGCT 1 cut(s) 207
AlwI GGATC 1 cut(s) 4
AoxI GGCC 1 cut(s) 130
AsuHPI GGTGA 1 cut(s) 104
BalI TGGCCA 1 cut(s) 132
BfaI CTAG 2 cut(s) 20, 185
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
BmsI GCATC 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 65
BseLI CCNNNNNNNGG 1 cut(s) 31
BseNI ACTGG 1 cut(s) 65
BshFI GGCC 1 cut(s) 132
BslFI GGGAC 3 cut(s) 8, 130, 182
BslI CCNNNNNNNGG 1 cut(s) 31
BsmFI GGGAC 3 cut(s) 8, 130, 182
BsnI GGCC 1 cut(s) 132
Bsp143I GATC 1 cut(s) 9
BspACI CCGC 1 cut(s) 189
BspANI GGCC 1 cut(s) 132
BspPI GGATC 1 cut(s) 4
BspQI GCTCTTC 1 cut(s) 94
BsrI ACTGG 1 cut(s) 65
BssMI GATC 1 cut(s) 9
Bst6I CTCTTC 1 cut(s) 94
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstX2I RGATCY 1 cut(s) 9
BstYI RGATCY 1 cut(s) 9
BsuRI GGCC 1 cut(s) 132
CviJI RGCY 5 cut(s) 104, 132, 188, 207, 222
CviKI_1 RGCY 5 cut(s) 104, 132, 188, 207, 222
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 99
FaiI YATR 2 cut(s) 129, 174
FaqI GGGAC 3 cut(s) 8, 130, 182
Fnu4HI GCNGC 1 cut(s) 189
Fsp4HI GCNGC 1 cut(s) 189
FspBI CTAG 2 cut(s) 20, 185
GluI GCNGC 1 cut(s) 189
HaeIII GGCC 1 cut(s) 132
HphI GGTGA 1 cut(s) 104
Hpy188I TCNGA 2 cut(s) 98, 215
Hpy188III TCNNGA 2 cut(s) 77, 199
HpyCH4V TGCA 2 cut(s) 142, 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
Kzo9I GATC 1 cut(s) 9
LguI GCTCTTC 1 cut(s) 94
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 6 cut(s) 39, 78, 90, 128, 180, 193
LweI GCATC 1 cut(s) 129
MaeI CTAG 2 cut(s) 20, 185
MaeIII GTNAC 1 cut(s) 155
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 1 cut(s) 111
MflI RGATCY 1 cut(s) 9
MlsI TGGCCA 1 cut(s) 132
MluNI TGGCCA 1 cut(s) 132
MnlI CCTC 1 cut(s) 170
Mox20I TGGCCA 1 cut(s) 132
MscI TGGCCA 1 cut(s) 132
MseI TTAA 1 cut(s) 36
Msp20I TGGCCA 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 188
NdeII GATC 1 cut(s) 9
PciSI GCTCTTC 1 cut(s) 94
PkrI GCNGC 1 cut(s) 190
PsuI RGATCY 1 cut(s) 9
SapI GCTCTTC 1 cut(s) 94
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 1 cut(s) 9
SetI ASST 3 cut(s) 117, 162, 209
SfaNI GCATC 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 48
SmoI CTYRAG 1 cut(s) 48
SsiI CCGC 1 cut(s) 189
SspMI CTAG 2 cut(s) 20, 185
TauI GCSGC 1 cut(s) 191
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TspDTI ATGAA 1 cut(s) 111
XspI CTAG 2 cut(s) 20, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.