Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0029358

Physical Location & Seq

Genomic Coordinates Forward (+)

20387505 .. 20388904

Gene Structure 1400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGGAAGGGTCCCTTCTCTTTCAAGCGCAGCAGCAGCAGCGTACGACGCCGCCCCAAGAAGCTCATTGGCACTCCACCTTCCCCTTTTCCCTCTCCGCCGCAGCCGATTCGCTCTCCTCCGCCCTCCAACAGTGTCAATGTTAACAATACAAATACGAATAATAATAGTCTCAGCGCGGTTGTTGCTGGCGGCGCCGGCGGTGGAGTGAAGGGGAAGAAGAAGGCTGGAGGAGCCAGGCTTTGGATGCGGTTTGACCGCTTCGGCGTATCAGAGCTCGTCGAGTGTGATAAGAACGCTATCATTCGACGCGCTGCCATTCCCGCCCGGGACTTGAGGATTCTCGGCCCTGTCTTCTCCCATTCCTCCAGCATCCTTGGGAGAAGGCCATGGTGGTTAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

135

Amino Acids

14.44

Weight (kDa)

12.0

Isoelectric Point (pI)

83.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029358)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g20690
rosa_samantha	Rh1CG354700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	194
AccB7I	CCANNNNNTGG	1 cut(s)	243
AccII	CGCG	2 cut(s)	179, 312
AcyI	GRCGYC	2 cut(s)	49, 195
AfaI	GTAC	1 cut(s)	45
AfiI	CCNNNNNNNGG	1 cut(s)	243
AgsI	TTSAA	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	236
AluBI	AGCT	2 cut(s)	64, 277
AluI	AGCT	2 cut(s)	64, 277
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	1 cut(s)	176
Ama87I	CYCGRG	1 cut(s)	327
AoxI	GGCC	2 cut(s)	346, 386
ApeKI	GCWGC	6 cut(s)	30, 33, 36, 39, 103, 314
AspLEI	GCGC	4 cut(s)	30, 179, 197, 314
AspS9I	GGNCC	2 cut(s)	11, 347
AsuC2I	CCSGG	2 cut(s)	328, 329
AvaI	CYCGRG	1 cut(s)	327
AvaII	GGWCC	1 cut(s)	11
BanI	GGYRCC	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	346
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	6 cut(s)	42, 45, 48, 51, 115, 301
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BciT130I	CCWGG	1 cut(s)	238
BcnI	CCSGG	2 cut(s)	328, 329
BcoDI	GTCTC	1 cut(s)	176
BfoI	RGCGCY	1 cut(s)	198
BisI	GCNGC	9 cut(s)	31, 34, 37, 40, 52, 101, 104, 193, 315
BlsI	GCNGC	9 cut(s)	32, 35, 38, 41, 53, 102, 105, 194, 316
Bme1390I	CCNGG	3 cut(s)	238, 328, 329
Bme18I	GGWCC	1 cut(s)	11
BmeT110I	CYCGRG	1 cut(s)	327
BmgT120I	GGNCC	2 cut(s)	11, 347
BmiI	GGNNCC	4 cut(s)	12, 13, 196, 235
BmrFI	CCNGG	3 cut(s)	238, 328, 329
BmsI	GCATC	2 cut(s)	237, 381
BpiI	GAAGAC	1 cut(s)	346
BpmI	CTGGAG	2 cut(s)	249, 352
BpuEI	CTTGAG	1 cut(s)	355
BpuMI	CCSGG	2 cut(s)	328, 329
BsaHI	GRCGYC	2 cut(s)	49, 195
BsaJI	CCNNGG	3 cut(s)	327, 376, 389
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse118I	RCCGGY	1 cut(s)	197
BseBI	CCWGG	1 cut(s)	238
BseDI	CCNNGG	3 cut(s)	327, 376, 389
BseGI	GGATG	2 cut(s)	252, 372
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	187
BseRI	GAGGAG	2 cut(s)	108, 246
BseXI	GCAGC	6 cut(s)	42, 45, 48, 51, 115, 301
Bsh1236I	CGCG	2 cut(s)	179, 312
BshFI	GGCC	2 cut(s)	348, 388
BshNI	GGYRCC	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	279
BsiHKCI	CYCGRG	1 cut(s)	327
BsiSI	CCGG	2 cut(s)	198, 328
BsiWI	CGTACG	1 cut(s)	43
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	344
BsnI	GGCC	2 cut(s)	348, 388
BsoBI	CYCGRG	1 cut(s)	327
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp19I	CCATGG	1 cut(s)	389
BspANI	GGCC	2 cut(s)	348, 388
BspCNI	CTCAG	1 cut(s)	186
BspFNI	CGCG	2 cut(s)	179, 312
BspLI	GGNNCC	4 cut(s)	12, 13, 196, 235
BspT107I	GGYRCC	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	197
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	3 cut(s)	327, 376, 389
BssNI	GRCGYC	2 cut(s)	49, 195
BssT1I	CCWWGG	2 cut(s)	376, 389
Bst2UI	CCWGG	1 cut(s)	238
Bst4CI	ACNGT	1 cut(s)	134
BstACI	GRCGYC	2 cut(s)	49, 195
BstC8I	GCNNGC	2 cut(s)	190, 199
BstDEI	CTNAG	1 cut(s)	173
BstDSI	CCRYGG	1 cut(s)	389
BstF5I	GGATG	2 cut(s)	252, 372
BstFNI	CGCG	2 cut(s)	179, 312
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	4 cut(s)	30, 179, 197, 314
BstMAI	GTCTC	1 cut(s)	176
BstMWI	GCNNNNNNNGC	9 cut(s)	36, 39, 48, 185, 194, 198, 233, 247, 323
BstNI	CCWGG	1 cut(s)	238
BstSCI	CCNGG	3 cut(s)	236, 326, 327
BstUI	CGCG	2 cut(s)	179, 312
BstV1I	GCAGC	6 cut(s)	42, 45, 48, 51, 115, 301
BstV2I	GAAGAC	1 cut(s)	346
BsuRI	GGCC	2 cut(s)	348, 388
BtgI	CCRYGG	1 cut(s)	389
BtsCI	GGATG	2 cut(s)	252, 372
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	2 cut(s)	190, 199
CfoI	GCGC	4 cut(s)	30, 179, 197, 314
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	2 cut(s)	11, 347
Cfr9I	CCCGGG	1 cut(s)	327
CseI	GACGC	2 cut(s)	57, 318
Csp6I	GTAC	1 cut(s)	44
CviAII	CATG	1 cut(s)	390
CviJI	RGCY	8 cut(s)	64, 106, 227, 236, 241, 277, 348, 388
CviKI_1	RGCY	8 cut(s)	64, 106, 227, 236, 241, 277, 348, 388
CviQI	GTAC	1 cut(s)	44
DdeI	CTNAG	1 cut(s)	173
DinI	GGCGCC	1 cut(s)	196
EciI	GGCGGA	2 cut(s)	87, 111
Ecl136II	GAGCTC	1 cut(s)	277
Eco130I	CCWWGG	2 cut(s)	376, 389
Eco24I	GRGCYC	1 cut(s)	279
Eco47I	GGWCC	1 cut(s)	11
Eco53kI	GAGCTC	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	327
EcoICRI	GAGCTC	1 cut(s)	277
EcoO109I	RGGNCCY	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	236
EcoT14I	CCWWGG	2 cut(s)	376, 389
EcoT38I	GRGCYC	1 cut(s)	279
EgeI	GGCGCC	1 cut(s)	196
EheI	GGCGCC	1 cut(s)	196
ErhI	CCWWGG	2 cut(s)	376, 389
FaeI	CATG	1 cut(s)	393
FaiI	YATR	1 cut(s)	391
FalI	AAGNNNNNCTT	1 cut(s)	31
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	1 cut(s)	389
FauI	CCCGC	1 cut(s)	331
Fnu4HI	GCNGC	9 cut(s)	31, 34, 37, 40, 52, 101, 104, 193, 315
FokI	GGATG	2 cut(s)	259, 359
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	9 cut(s)	31, 34, 37, 40, 52, 101, 104, 193, 315
GlaI	GCGC	4 cut(s)	29, 178, 196, 313
GluI	GCNGC	9 cut(s)	31, 34, 37, 40, 52, 101, 104, 193, 315
GsuI	CTGGAG	2 cut(s)	249, 352
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	348, 388
HapII	CCGG	2 cut(s)	198, 328
HgaI	GACGC	2 cut(s)	57, 318
HhaI	GCGC	4 cut(s)	30, 179, 197, 314
Hin1I	GRCGYC	2 cut(s)	49, 195
Hin1II	CATG	1 cut(s)	393
Hin6I	GCGC	4 cut(s)	28, 177, 195, 312
HinP1I	GCGC	4 cut(s)	28, 177, 195, 312
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	2 cut(s)	109, 340
HpaI	GTTAAC	1 cut(s)	145
HpaII	CCGG	2 cut(s)	198, 328
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	1 cut(s)	274
Hpy8I	GTNNAC	1 cut(s)	145
Hpy99I	CGWCG	3 cut(s)	51, 284, 312
HpyAV	CCTTC	5 cut(s)	25, 90, 205, 217, 378
HpyCH4III	ACNGT	1 cut(s)	134
HpyF10VI	GCNNNNNNNGC	9 cut(s)	36, 39, 48, 185, 194, 198, 233, 247, 323
HpyF3I	CTNAG	1 cut(s)	173
Hsp92I	GRCGYC	2 cut(s)	49, 195
Hsp92II	CATG	1 cut(s)	393
HspAI	GCGC	4 cut(s)	28, 177, 195, 312
KasI	GGCGCC	1 cut(s)	194
KflI	GGGWCCC	1 cut(s)	11
KroI	GCCGGC	1 cut(s)	197
KroNI	GCCGGC	1 cut(s)	199
KspAI	GTTAAC	1 cut(s)	145
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	8 cut(s)	174, 211, 213, 223, 250, 341, 363, 382
Lsp1109I	GCAGC	6 cut(s)	42, 45, 48, 51, 115, 301
LweI	GCATC	2 cut(s)	237, 381
MboII	GAAGA	3 cut(s)	229, 232, 346
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	1 cut(s)	399
Mly113I	GGCGCC	1 cut(s)	195
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	6 cut(s)	103, 129, 136, 224, 330, 376
MreI	CGCCGGCG	1 cut(s)	197
MroNI	GCCGGC	1 cut(s)	197
MseI	TTAA	2 cut(s)	144, 398
MspI	CCGG	2 cut(s)	198, 328
MspR9I	CCNGG	3 cut(s)	238, 328, 329
MvaI	CCWGG	1 cut(s)	238
MvnI	CGCG	2 cut(s)	179, 312
MwoI	GCNNNNNNNGC	9 cut(s)	36, 39, 48, 185, 194, 198, 233, 247, 323
NaeI	GCCGGC	1 cut(s)	199
NarI	GGCGCC	1 cut(s)	195
NciI	CCSGG	2 cut(s)	328, 329
NcoI	CCATGG	1 cut(s)	389
NgoMIV	GCCGGC	1 cut(s)	197
NlaIII	CATG	1 cut(s)	393
NlaIV	GGNNCC	4 cut(s)	12, 13, 196, 235
NmeAIII	GCCGAG	1 cut(s)	324
PdiI	GCCGGC	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	109, 340
Pfl23II	CGTACG	1 cut(s)	43
PflMI	CCANNNNNTGG	1 cut(s)	243
PkrI	GCNGC	9 cut(s)	32, 35, 38, 41, 53, 102, 105, 194, 316
PluTI	GGCGCC	1 cut(s)	198
PpuMI	RGGWCCY	1 cut(s)	11
Psp124BI	GAGCTC	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	236
PspLI	CGTACG	1 cut(s)	43
PspN4I	GGNNCC	4 cut(s)	12, 13, 196, 235
PspPI	GGNCC	2 cut(s)	11, 347
PspPPI	RGGWCCY	1 cut(s)	11
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
SacI	GAGCTC	1 cut(s)	279
SaqAI	TTAA	2 cut(s)	144, 398
SatI	GCNGC	9 cut(s)	31, 34, 37, 40, 52, 101, 104, 193, 315
Sau96I	GGNCC	2 cut(s)	11, 347
ScrFI	CCNGG	3 cut(s)	238, 328, 329
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	3 cut(s)	66, 82, 279
SfaNI	GCATC	2 cut(s)	237, 381
SfoI	GGCGCC	1 cut(s)	196
SgrAI	CRCCGGYG	1 cut(s)	197
SinI	GGWCC	1 cut(s)	11
SmaI	CCCGGG	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
Sse9I	AATT	1 cut(s)	399
SspDI	GGCGCC	1 cut(s)	194
SstI	GAGCTC	1 cut(s)	279
StyD4I	CCNGG	3 cut(s)	236, 326, 327
StyI	CCWWGG	2 cut(s)	376, 389
TaaI	ACNGT	1 cut(s)	134
TaqI	TCGA	2 cut(s)	282, 307
TasI	AATT	1 cut(s)	399
TauI	GCSGC	3 cut(s)	54, 103, 195
TfiI	GAWTC	2 cut(s)	109, 340
Tru1I	TTAA	2 cut(s)	144, 398
Tru9I	TTAA	2 cut(s)	144, 398
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	6 cut(s)	30, 33, 36, 39, 103, 314
TspMI	CCCGGG	1 cut(s)	327
TspRI	CASTG	1 cut(s)	139
Van91I	CCANNNNNTGG	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	11
XmaI	CCCGGG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.