Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0029358

Physical Location & Seq

Genomic Coordinates Forward (+)

62999931 .. 63000314

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG354700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGGGAAAGGTCCGTTCTCGTTGAAGTGTAGCAGCAGCAGCCGGCGGCAGAGGCCGAAGAAGTTTATCGGCCCTCCACCTTCTCCTTTCCCTTCGCCTCCTCCTCCTCAGCCTCGGCCCATGGGATCCGCCCCCTCCTCGCCCCTGAACAACAACAGTTTGGCTGTCAAGGCCAAGAAGAAGGCCGGCGGAGGAGCCAGGCTCTGGATGCGATTCGATCGCTGCGGCGGTTCCGAGCTCGTCGAGTGTGACAAGAATGCTATTATCCGACGCGCCGCCATTCCCCCTCGTGACTTGAGAATTCTCGGCCCCGTTTTCTCCCATTCCTCCAGCATCCTCGGTACCTTCTCTCTCTCTAATCCACCAACATCATTTCCGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

127

Amino Acids

13.56

Weight (kDa)

11.43

Isoelectric Point (pI)

85.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029358)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g20690
rosa_samantha	Rh1CG354700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	341
AccB1I	GGYRCC	1 cut(s)	341
AccB7I	CCANNNNNTGG	1 cut(s)	204
AccII	CGCG	1 cut(s)	273
AciI	CCGC	7 cut(s)	46, 129, 189, 225, 228, 276, 377
AclWI	GGATC	2 cut(s)	120, 133
AcsI	RAATTY	1 cut(s)	300
AfaI	GTAC	1 cut(s)	343
AfiI	CCNNNNNNNGG	1 cut(s)	204
AgsI	TTSAA	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	197
AluBI	AGCT	1 cut(s)	238
AluI	AGCT	1 cut(s)	238
Alw21I	GWGCWC	1 cut(s)	240
AlwI	GGATC	2 cut(s)	120, 133
AlwNI	CAGNNNCTG	1 cut(s)	204
AoxI	GGCC	6 cut(s)	53, 70, 116, 171, 183, 307
ApeKI	GCWGC	4 cut(s)	33, 36, 39, 222
ApoI	RAATTY	1 cut(s)	300
Asp718I	GGTACC	1 cut(s)	341
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	4 cut(s)	11, 71, 117, 308
AvaII	GGWCC	1 cut(s)	11
BamHI	GGATCC	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	240
BauI	CACGAG	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	240
BbvCI	CCTCAGC	1 cut(s)	108
BbvI	GCAGC	4 cut(s)	45, 48, 51, 209
BciT130I	CCWGG	1 cut(s)	199
BisI	GCNGC	7 cut(s)	34, 37, 40, 47, 223, 226, 276
BlsI	GCNGC	7 cut(s)	35, 38, 41, 48, 224, 227, 277
Bme1390I	CCNGG	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	4 cut(s)	11, 71, 117, 308
BmiI	GGNNCC	5 cut(s)	127, 196, 232, 310, 343
BmrFI	CCNGG	1 cut(s)	199
BmsI	GCATC	2 cut(s)	198, 342
BplI	GAGNNNNNCTC	2 cut(s)	186, 218
BpmI	CTGGAG	1 cut(s)	313
Bpu10I	CCTNAGC	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	316
BsaJI	CCNNGG	3 cut(s)	113, 120, 337
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
Bse118I	RCCGGY	2 cut(s)	42, 185
BseBI	CCWGG	1 cut(s)	199
BseDI	CCNNGG	3 cut(s)	113, 120, 337
BseGI	GGATG	2 cut(s)	213, 333
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	122
BseRI	GAGGAG	5 cut(s)	90, 93, 96, 127, 207
BseXI	GCAGC	4 cut(s)	45, 48, 51, 209
Bsh1236I	CGCG	1 cut(s)	273
Bsh1285I	CGRYCG	1 cut(s)	220
BshFI	GGCC	6 cut(s)	55, 72, 118, 173, 185, 309
BshNI	GGYRCC	1 cut(s)	341
BsiEI	CGRYCG	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	240
BsiSI	CCGG	2 cut(s)	43, 186
BslI	CCNNNNNNNGG	1 cut(s)	204
BsmI	GAATGC	1 cut(s)	262
BsnI	GGCC	6 cut(s)	55, 72, 118, 173, 185, 309
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	2 cut(s)	125, 217
Bsp19I	CCATGG	1 cut(s)	120
BspACI	CCGC	7 cut(s)	46, 129, 189, 225, 228, 276, 377
BspANI	GGCC	6 cut(s)	55, 72, 118, 173, 185, 309
BspCNI	CTCAG	1 cut(s)	121
BspFNI	CGCG	1 cut(s)	273
BspLI	GGNNCC	5 cut(s)	127, 196, 232, 310, 343
BspPI	GGATC	2 cut(s)	120, 133
BspT107I	GGYRCC	1 cut(s)	341
BsrFI	RCCGGY	2 cut(s)	42, 185
BssAI	RCCGGY	2 cut(s)	42, 185
BssECI	CCNNGG	3 cut(s)	113, 120, 337
BssMI	GATC	2 cut(s)	125, 217
BssSI	CACGAG	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	120
Bst2BI	CACGAG	1 cut(s)	288
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	44, 187
BstDEI	CTNAG	1 cut(s)	108
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	2 cut(s)	213, 333
BstFNI	CGCG	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	2 cut(s)	128, 220
BstMBI	GATC	2 cut(s)	125, 217
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 52, 170, 208
BstNI	CCWGG	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	197
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	4 cut(s)	45, 48, 51, 209
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
BsuRI	GGCC	6 cut(s)	55, 72, 118, 173, 185, 309
BtgI	CCRYGG	1 cut(s)	120
BtsCI	GGATG	2 cut(s)	213, 333
Cac8I	GCNNGC	2 cut(s)	44, 187
CaiI	CAGNNNCTG	1 cut(s)	204
CfoI	GCGC	1 cut(s)	275
Cfr10I	RCCGGY	2 cut(s)	42, 185
Cfr13I	GGNCC	4 cut(s)	11, 71, 117, 308
CseI	GACGC	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	1 cut(s)	121
CviQI	GTAC	1 cut(s)	342
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	2 cut(s)	127, 219
DpnII	GATC	2 cut(s)	125, 217
EciI	GGCGGA	3 cut(s)	118, 204, 366
Ecl136II	GAGCTC	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	11
Eco53kI	GAGCTC	1 cut(s)	238
EcoICRI	GAGCTC	1 cut(s)	238
EcoRI	GAATTC	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	197
EcoT14I	CCWWGG	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	1 cut(s)	124
FaiI	YATR	2 cut(s)	122, 382
FatI	CATG	1 cut(s)	120
Fnu4HI	GCNGC	7 cut(s)	34, 37, 40, 47, 223, 226, 276
FokI	GGATG	2 cut(s)	220, 320
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	7 cut(s)	34, 37, 40, 47, 223, 226, 276
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	7 cut(s)	34, 37, 40, 47, 223, 226, 276
GsuI	CTGGAG	1 cut(s)	313
HaeIII	GGCC	6 cut(s)	55, 72, 118, 173, 185, 309
HapII	CCGG	2 cut(s)	43, 186
HgaI	GACGC	1 cut(s)	279
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	1 cut(s)	124
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HinfI	GANTC	1 cut(s)	213
HpaII	CCGG	2 cut(s)	43, 186
Hpy188I	TCNGA	2 cut(s)	235, 269
Hpy188III	TCNNGA	2 cut(s)	205, 290
Hpy99I	CGWCG	2 cut(s)	245, 273
HpyAV	CCTTC	4 cut(s)	90, 102, 175, 355
HpyCH4III	ACNGT	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 52, 170, 208
HpyF3I	CTNAG	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	124
HspAI	GCGC	1 cut(s)	273
KpnI	GGTACC	1 cut(s)	345
KroI	GCCGGC	2 cut(s)	42, 185
KroNI	GCCGGC	2 cut(s)	44, 187
Kzo9I	GATC	2 cut(s)	125, 217
LmnI	GCTCC	1 cut(s)	194
LpnPI	CCDG	7 cut(s)	56, 158, 184, 190, 199, 211, 343
Lsp1109I	GCAGC	4 cut(s)	45, 48, 51, 209
LweI	GCATC	2 cut(s)	198, 342
MaeIII	GTNAC	2 cut(s)	248, 290
MalI	GATC	2 cut(s)	127, 219
MboI	GATC	2 cut(s)	125, 217
MboII	GAAGA	2 cut(s)	70, 190
MflI	RGATCY	1 cut(s)	125
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	1 cut(s)	300
MmeI	TCCRAC	1 cut(s)	292
MroNI	GCCGGC	2 cut(s)	42, 185
MspI	CCGG	2 cut(s)	43, 186
MspR9I	CCNGG	1 cut(s)	199
Mva1269I	GAATGC	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	199
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	4 cut(s)	39, 52, 170, 208
NaeI	GCCGGC	2 cut(s)	44, 187
NcoI	CCATGG	1 cut(s)	120
NdeII	GATC	2 cut(s)	125, 217
NgoMIV	GCCGGC	2 cut(s)	42, 185
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	5 cut(s)	127, 196, 232, 310, 343
NmeAIII	GCCGAG	2 cut(s)	94, 285
NmuCI	GTSAC	2 cut(s)	248, 290
PctI	GAATGC	1 cut(s)	262
PdiI	GCCGGC	2 cut(s)	44, 187
PfeI	GAWTC	1 cut(s)	213
PflMI	CCANNNNNTGG	1 cut(s)	204
PkrI	GCNGC	7 cut(s)	35, 38, 41, 48, 224, 227, 277
Ple19I	CGATCG	1 cut(s)	220
Psp124BI	GAGCTC	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	197
PspN4I	GGNNCC	5 cut(s)	127, 196, 232, 310, 343
PspPI	GGNCC	4 cut(s)	11, 71, 117, 308
PstNI	CAGNNNCTG	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	125
PvuI	CGATCG	1 cut(s)	220
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
SacI	GAGCTC	1 cut(s)	240
SatI	GCNGC	7 cut(s)	34, 37, 40, 47, 223, 226, 276
Sau3AI	GATC	2 cut(s)	125, 217
Sau96I	GGNCC	4 cut(s)	11, 71, 117, 308
ScrFI	CCNGG	1 cut(s)	199
SduI	GDGCHC	1 cut(s)	240
SetI	ASST	4 cut(s)	13, 82, 240, 347
SfaNI	GCATC	2 cut(s)	198, 342
SinI	GGWCC	1 cut(s)	11
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
Sse9I	AATT	1 cut(s)	300
SsiI	CCGC	7 cut(s)	46, 129, 189, 225, 228, 276, 377
SstI	GAGCTC	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	197
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	158
TaqI	TCGA	2 cut(s)	216, 243
TasI	AATT	1 cut(s)	300
TauI	GCSGC	3 cut(s)	49, 228, 278
TfiI	GAWTC	1 cut(s)	213
TseFI	GTSAC	2 cut(s)	248, 290
TseI	GCWGC	4 cut(s)	33, 36, 39, 222
Tsp45I	GTSAC	2 cut(s)	248, 290
Van91I	CCANNNNNTGG	1 cut(s)	204
VpaK11BI	GGWCC	1 cut(s)	11
XapI	RAATTY	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.