pycom09g01910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0028793
Physical Location & Seq
Forward (+)
1414230 .. 1414451
222 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 222 bp
ATGGCTGCCATAGGAGAACCATGGGTTAGAGTTTTGGTAATCGCATCTTATCTGGCCTTGGCCGTGTTTCACCACTCAAAGAAGGTATCAGAGAAAAAGGAGGAAATTGTAGTGACTAATAGGAAGCTTCCAATGCCCTTGCTCGGTGCAGGCTTAGCCATTGGAATTCGCCTTGCTGCTAAGTGGGCCGGGTACCGGCATTTGACATGGATGATAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.12

Weight (kDa)

10.21

Isoelectric Point (pI)

17.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AtTam38 PF25114 1 - 73 4.7e-33 AtTam38 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0028793)

Species Orthologous Gene IDs
malus_domestica MD17G1083600.v1.1
pyrus_communis pycom09g01910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 192
AccB1I GGYRCC 1 cut(s) 192
AcoI YGGCCR 1 cut(s) 60
AcsI RAATTY 1 cut(s) 165
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 2 cut(s) 143, 195
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
AoxI GGCC 3 cut(s) 54, 60, 186
ApeKI GCWGC 2 cut(s) 5, 176
ApoI RAATTY 1 cut(s) 165
Asp718I GGTACC 1 cut(s) 192
AspS9I GGNCC 1 cut(s) 186
AsuC2I CCSGG 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 62
BanI GGYRCC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 163
BceAI ACGGC 1 cut(s) 47
BcnI CCSGG 1 cut(s) 190
BisI GCNGC 2 cut(s) 6, 177
BlpI GCTNAGC 1 cut(s) 154
BlsI GCNGC 2 cut(s) 7, 178
Bme1390I CCNGG 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 1 cut(s) 194
BmrFI CCNGG 1 cut(s) 190
BmsI GCATC 1 cut(s) 53
Bpu1102I GCTNAGC 1 cut(s) 154
BpuMI CCSGG 1 cut(s) 190
BsaJI CCNNGG 2 cut(s) 20, 57
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 195
Bse118I RCCGGY 1 cut(s) 195
BseDI CCNNGG 2 cut(s) 20, 57
BseGI GGATG 1 cut(s) 216
BseLI CCNNNNNNNGG 2 cut(s) 143, 195
BseXI GCAGC 1 cut(s) 163
BsgI GTGCAG 1 cut(s) 168
BshFI GGCC 3 cut(s) 56, 62, 188
BshNI GGYRCC 1 cut(s) 192
BsiSI CCGG 2 cut(s) 189, 196
BslI CCNNNNNNNGG 2 cut(s) 143, 195
BsnI GGCC 3 cut(s) 56, 62, 188
Bsp1720I GCTNAGC 1 cut(s) 154
Bsp19I CCATGG 1 cut(s) 20
BspANI GGCC 3 cut(s) 56, 62, 188
BspLI GGNNCC 1 cut(s) 194
BspT107I GGYRCC 1 cut(s) 192
BsrFI RCCGGY 1 cut(s) 195
BssAI RCCGGY 1 cut(s) 195
BssECI CCNNGG 2 cut(s) 20, 57
BssT1I CCWWGG 2 cut(s) 20, 57
BstC8I GCNNGC 1 cut(s) 151
BstDEI CTNAG 2 cut(s) 154, 180
BstDSI CCRYGG 1 cut(s) 20
BstF5I GGATG 1 cut(s) 216
BstMWI GCNNNNNNNGC 3 cut(s) 133, 155, 185
BstSCI CCNGG 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 163
BsuRI GGCC 3 cut(s) 56, 62, 188
BtgI CCRYGG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 186
Csp6I GTAC 1 cut(s) 193
CviAII CATG 2 cut(s) 21, 207
CviJI RGCY 7 cut(s) 5, 56, 62, 127, 153, 158, 188
CviKI_1 RGCY 7 cut(s) 5, 56, 62, 127, 153, 158, 188
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 2 cut(s) 154, 180
EaeI YGGCCR 1 cut(s) 60
Eco130I CCWWGG 2 cut(s) 20, 57
EcoRI GAATTC 1 cut(s) 165
EcoT14I CCWWGG 2 cut(s) 20, 57
ErhI CCWWGG 2 cut(s) 20, 57
FaeI CATG 2 cut(s) 24, 210
FaiI YATR 4 cut(s) 11, 22, 208, 220
FatI CATG 2 cut(s) 20, 206
Fnu4HI GCNGC 2 cut(s) 6, 177
Fsp4HI GCNGC 2 cut(s) 6, 177
GluI GCNGC 2 cut(s) 6, 177
HaeIII GGCC 3 cut(s) 56, 62, 188
HapII CCGG 2 cut(s) 189, 196
Hin1II CATG 2 cut(s) 24, 210
HindIII AAGCTT 1 cut(s) 125
HpaII CCGG 2 cut(s) 189, 196
HphI GGTGA 1 cut(s) 62
Hpy188I TCNGA 1 cut(s) 91
HpyAV CCTTC 1 cut(s) 76
HpyCH4V TGCA 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 3 cut(s) 133, 155, 185
HpyF3I CTNAG 2 cut(s) 154, 180
Hsp92II CATG 2 cut(s) 24, 210
KpnI GGTACC 1 cut(s) 196
LpnPI CCDG 4 cut(s) 38, 135, 202, 209
Lsp1109I GCAGC 1 cut(s) 163
LweI GCATC 1 cut(s) 53
MaeIII GTNAC 1 cut(s) 112
MluCI AATT 2 cut(s) 105, 165
MnlI CCTC 1 cut(s) 94
MspI CCGG 2 cut(s) 189, 196
MspR9I CCNGG 1 cut(s) 190
MwoI GCNNNNNNNGC 3 cut(s) 133, 155, 185
NciI CCSGG 1 cut(s) 190
NcoI CCATGG 1 cut(s) 20
NlaIII CATG 2 cut(s) 24, 210
NlaIV GGNNCC 1 cut(s) 194
NmuCI GTSAC 1 cut(s) 112
PkrI GCNGC 2 cut(s) 7, 178
PspN4I GGNNCC 1 cut(s) 194
PspPI GGNCC 1 cut(s) 186
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SatI GCNGC 2 cut(s) 6, 177
Sau96I GGNCC 1 cut(s) 186
ScrFI CCNGG 1 cut(s) 190
SetI ASST 2 cut(s) 87, 129
SfaNI GCATC 1 cut(s) 53
Sse9I AATT 2 cut(s) 105, 165
StyD4I CCNGG 1 cut(s) 188
StyI CCWWGG 2 cut(s) 20, 57
TasI AATT 2 cut(s) 105, 165
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 2 cut(s) 5, 176
Tsp45I GTSAC 1 cut(s) 112
XapI RAATTY 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.