Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0024663

Physical Location & Seq

Genomic Coordinates Forward (+)

1973839 .. 1974582

Gene Structure 744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g02640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGGCGATGGAGGCGTCGCATGCATGCCTTTGCAGCATAATATCATGGACACCTTTCCAATTCAGGAGAAGACTACGCTTTGCGGAGGCAAGAACGGTAACAATGGCTTCAATTCCAAGACGGTTAAGAAGAAGAAGATAGTGAAGGTAATGAAGCCCAAGAAGAAAGTTGTTAAGAACCCCGGGTCTTCGAAGAACGAGGAGTCCGACAAAAGTGAACTGGGATTGGATAAAGGTGCTAACAGTGCTACTAAGGAAGCTGAGAATGGTGAAAATGCTGAGGAGAAGAAGGAGGAAGTGGAAGAGGGTGAATTGGGGACTTTGAAGTGGCCCAAAGTTGAAGAGGAGAATGGTGAATTCGTGCCAGAGAAGTCTAGAAGAAGTGAAATTGAGAAGGGAGAGATTGTTGGTGAGAAGTGGAGGAGAGGTGAGGTGGAGAAATCAGAGTCCTTTTCAGGGAAATGGCGAAGAGGGGACGTAGAGAAAGGAGAGATTGTTCCAGAGAGGAGCAGACGAGTCGAAGCTGAATTTGGGTCGTGGAGACCTCCCAAGGATGAAATTGAGAAAGGTGAGTTCATTCCAGATAGATGGCAGAAAGGGGAAGTGGGCAGAGATGACTACACTCCCGGTAAATTCCGCAGGTATGATATGGGTAAGGAAAAGAGCTGGAAATTTGATCGTGAGCGTACACCACCTCCCGGGAAGTATTCAAATGATCGATCCTTTCAGAAGGAAAGACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0042800 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051276 GO:0051568 GO:0061458 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

248

Amino Acids

28.26

Weight (kDa)

8.79

Isoelectric Point (pI)

51.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024663)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g02640 pycom09g02650 pycom17g08770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	630
AciI	CCGC	2 cut(s)	84, 637
AclWI	GGATC	1 cut(s)	714
AcsI	RAATTY	4 cut(s)	356, 527, 632, 671
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	1 cut(s)	688
AfiI	CCNNNNNNNGG	2 cut(s)	456, 698
AgsI	TTSAA	4 cut(s)	112, 325, 341, 711
AjuI	GAANNNNNNNTTGG	2 cut(s)	513, 545
AloI	GAACNNNNNNTCC	4 cut(s)	188, 220, 480, 512
AluBI	AGCT	3 cut(s)	260, 524, 666
AluI	AGCT	3 cut(s)	260, 524, 666
Alw26I	GTCTC	1 cut(s)	535
AlwI	GGATC	1 cut(s)	714
Ama87I	CYCGRG	2 cut(s)	182, 698
AoxI	GGCC	1 cut(s)	329
ApeKI	GCWGC	1 cut(s)	34
ApoI	RAATTY	4 cut(s)	356, 527, 632, 671
AspS9I	GGNCC	1 cut(s)	330
AsuC2I	CCSGG	5 cut(s)	183, 184, 627, 699, 700
AsuHPI	GGTGA	6 cut(s)	281, 320, 365, 422, 440, 581
AsuII	TTCGAA	1 cut(s)	191
AvaI	CYCGRG	2 cut(s)	182, 698
BbsI	GAAGAC	2 cut(s)	77, 180
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	2 cut(s)	2, 582
BcgI	CGANNNNNNTGC	2 cut(s)	499, 533
BcnI	CCSGG	5 cut(s)	183, 184, 627, 699, 700
BcoDI	GTCTC	1 cut(s)	535
BfaI	CTAG	1 cut(s)	375
BfuAI	ACCTGC	1 cut(s)	630
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
Bme1390I	CCNGG	5 cut(s)	183, 184, 627, 699, 700
BmeT110I	CYCGRG	2 cut(s)	182, 698
BmgT120I	GGNCC	1 cut(s)	330
BmrFI	CCNGG	5 cut(s)	183, 184, 627, 699, 700
BmrI	ACTGGG	1 cut(s)	230
BmuI	ACTGGG	1 cut(s)	230
BpiI	GAAGAC	2 cut(s)	77, 180
Bpu10I	CCTNAGC	1 cut(s)	279
Bpu14I	TTCGAA	1 cut(s)	191
BpuMI	CCSGG	5 cut(s)	183, 184, 627, 699, 700
Bsa29I	ATCGAT	1 cut(s)	718
BsaHI	GRCGYC	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	535
BsaJI	CCNNGG	4 cut(s)	181, 182, 549, 698
BsaXI	ACNNNNNCTCC	8 cut(s)	390, 412, 420, 442, 480, 510, 679, 709
Bsc4I	CCNNNNNNNGG	2 cut(s)	456, 698
Bse1I	ACTGG	1 cut(s)	225
BseCI	ATCGAT	1 cut(s)	718
BseDI	CCNNGG	4 cut(s)	181, 182, 549, 698
BseGI	GGATG	1 cut(s)	559
BseLI	CCNNNNNNNGG	2 cut(s)	456, 698
BseMII	CTCAG	2 cut(s)	252, 270
BseNI	ACTGG	1 cut(s)	225
BseRI	GAGGAG	5 cut(s)	215, 296, 359, 436, 520
BseXI	GCAGC	1 cut(s)	46
BshFI	GGCC	1 cut(s)	331
BshVI	ATCGAT	1 cut(s)	718
BsiHKCI	CYCGRG	2 cut(s)	182, 698
BsiSI	CCGG	3 cut(s)	183, 627, 699
BslFI	GGGAC	2 cut(s)	331, 488
BslI	CCNNNNNNNGG	2 cut(s)	456, 698
BsmAI	GTCTC	1 cut(s)	535
BsmFI	GGGAC	2 cut(s)	331, 488
BsnI	GGCC	1 cut(s)	331
Bso31I	GGTCTC	1 cut(s)	535
BsoBI	CYCGRG	2 cut(s)	182, 698
Bsp119I	TTCGAA	1 cut(s)	191
Bsp143I	GATC	3 cut(s)	676, 715, 719
BspACI	CCGC	2 cut(s)	84, 637
BspANI	GGCC	1 cut(s)	331
BspCNI	CTCAG	2 cut(s)	253, 271
BspDI	ATCGAT	1 cut(s)	718
BspMI	ACCTGC	1 cut(s)	630
BspPI	GGATC	1 cut(s)	714
BspT104I	TTCGAA	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	535
BsrI	ACTGG	1 cut(s)	225
BssECI	CCNNGG	4 cut(s)	181, 182, 549, 698
BssMI	GATC	3 cut(s)	676, 715, 719
BssNI	GRCGYC	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	549
Bst4CI	ACNGT	3 cut(s)	98, 124, 245
Bst6I	CTCTTC	3 cut(s)	297, 336, 463
BstACI	GRCGYC	1 cut(s)	15
BstBI	TTCGAA	1 cut(s)	191
BstC8I	GCNNGC	2 cut(s)	22, 26
BstDEI	CTNAG	3 cut(s)	252, 261, 279
BstF5I	GGATG	1 cut(s)	559
BstKTI	GATC	3 cut(s)	679, 718, 722
BstMAI	GTCTC	1 cut(s)	535
BstMBI	GATC	3 cut(s)	676, 715, 719
BstMWI	GCNNNNNNNGC	4 cut(s)	12, 21, 34, 245
BstNSI	RCATGY	2 cut(s)	24, 28
BstSCI	CCNGG	5 cut(s)	181, 182, 625, 697, 698
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	2 cut(s)	77, 180
BstXI	CCANNNNNNTGG	1 cut(s)	588
Bsu15I	ATCGAT	1 cut(s)	718
BsuRI	GGCC	1 cut(s)	331
BsuTUI	ATCGAT	1 cut(s)	718
BtgZI	GCGATG	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	559
BtsIMutI	CAGTG	1 cut(s)	250
BveI	ACCTGC	1 cut(s)	630
Cac8I	GCNNGC	2 cut(s)	22, 26
Cfr13I	GGNCC	1 cut(s)	330
Cfr9I	CCCGGG	2 cut(s)	182, 698
ClaI	ATCGAT	1 cut(s)	718
CseI	GACGC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	687
CviAII	CATG	3 cut(s)	21, 25, 46
CviJI	RGCY	6 cut(s)	108, 157, 260, 331, 524, 666
CviKI_1	RGCY	6 cut(s)	108, 157, 260, 331, 524, 666
CviQI	GTAC	1 cut(s)	687
DdeI	CTNAG	3 cut(s)	252, 261, 279
DpnI	GATC	3 cut(s)	678, 717, 721
DpnII	GATC	3 cut(s)	676, 715, 719
Eam1104I	CTCTTC	3 cut(s)	297, 336, 463
EarI	CTCTTC	3 cut(s)	297, 336, 463
Eco130I	CCWWGG	1 cut(s)	549
Eco31I	GGTCTC	1 cut(s)	535
Eco88I	CYCGRG	2 cut(s)	182, 698
EcoRI	GAATTC	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	549
EcoT22I	ATGCAT	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	3 cut(s)	24, 28, 49
FaiI	YATR	6 cut(s)	22, 26, 39, 47, 645, 650
FaqI	GGGAC	2 cut(s)	331, 488
FatI	CATG	3 cut(s)	20, 24, 45
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	1 cut(s)	566
Fsp4HI	GCNGC	1 cut(s)	35
FspBI	CTAG	1 cut(s)	375
GluI	GCNGC	1 cut(s)	35
HaeIII	GGCC	1 cut(s)	331
HapII	CCGG	3 cut(s)	183, 627, 699
HgaI	GACGC	1 cut(s)	4
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	3 cut(s)	24, 28, 49
HinfI	GANTC	3 cut(s)	203, 446, 516
HpaII	CCGG	3 cut(s)	183, 627, 699
HphI	GGTGA	6 cut(s)	281, 320, 365, 422, 440, 581
Hpy166II	GTNNAC	2 cut(s)	218, 689
Hpy188I	TCNGA	3 cut(s)	208, 445, 729
Hpy188III	TCNNGA	5 cut(s)	65, 375, 500, 581, 680
Hpy8I	GTNNAC	2 cut(s)	218, 689
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	4 cut(s)	139, 283, 388, 724
HpyCH4III	ACNGT	3 cut(s)	98, 124, 245
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	2 cut(s)	24, 34
HpyF10VI	GCNNNNNNNGC	4 cut(s)	12, 21, 34, 245
HpyF3I	CTNAG	3 cut(s)	252, 261, 279
HpySE526I	ACGT	1 cut(s)	477
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	3 cut(s)	24, 28, 49
Kzo9I	GATC	3 cut(s)	676, 715, 719
LmnI	GCTCC	1 cut(s)	507
Lsp1109I	GCAGC	1 cut(s)	46
MaeI	CTAG	1 cut(s)	375
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	3 cut(s)	678, 717, 721
MboI	GATC	3 cut(s)	676, 715, 719
MluCI	AATT	9 cut(s)	60, 112, 311, 356, 387, 527, 558, 632, 671
MlyI	GAGTC	3 cut(s)	212, 455, 525
MmeI	TCCRAC	1 cut(s)	231
Mph1103I	ATGCAT	1 cut(s)	26
MseI	TTAA	2 cut(s)	126, 174
MspI	CCGG	3 cut(s)	183, 627, 699
MspR9I	CCNGG	5 cut(s)	183, 184, 627, 699, 700
MwoI	GCNNNNNNNGC	4 cut(s)	12, 21, 34, 245
NciI	CCSGG	5 cut(s)	183, 184, 627, 699, 700
NdeII	GATC	3 cut(s)	676, 715, 719
NlaIII	CATG	3 cut(s)	24, 28, 49
NsiI	ATGCAT	1 cut(s)	26
NspI	RCATGY	2 cut(s)	24, 28
NspV	TTCGAA	1 cut(s)	191
PaeI	GCATGC	2 cut(s)	24, 28
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	36
PleI	GAGTC	3 cut(s)	211, 454, 524
PpsI	GAGTC	3 cut(s)	211, 454, 524
PspPI	GGNCC	1 cut(s)	330
RsaI	GTAC	1 cut(s)	688
RsaNI	GTAC	1 cut(s)	687
SaqAI	TTAA	2 cut(s)	126, 174
SatI	GCNGC	1 cut(s)	35
Sau3AI	GATC	3 cut(s)	676, 715, 719
Sau96I	GGNCC	1 cut(s)	330
SchI	GAGTC	3 cut(s)	212, 455, 525
ScrFI	CCNGG	5 cut(s)	183, 184, 627, 699, 700
SfuI	TTCGAA	1 cut(s)	191
SmaI	CCCGGG	2 cut(s)	184, 700
SphI	GCATGC	2 cut(s)	24, 28
Sse9I	AATT	9 cut(s)	60, 112, 311, 356, 387, 527, 558, 632, 671
SsiI	CCGC	2 cut(s)	84, 637
SspMI	CTAG	1 cut(s)	375
StyD4I	CCNGG	5 cut(s)	181, 182, 625, 697, 698
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	3 cut(s)	98, 124, 245
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	3 cut(s)	191, 519, 718
TasI	AATT	9 cut(s)	60, 112, 311, 356, 387, 527, 558, 632, 671
Tru1I	TTAA	2 cut(s)	126, 174
Tru9I	TTAA	2 cut(s)	126, 174
TscAI	CASTG	1 cut(s)	250
TseI	GCWGC	1 cut(s)	34
TspDTI	ATGAA	3 cut(s)	167, 565, 570
TspMI	CCCGGG	2 cut(s)	182, 698
TspRI	CASTG	1 cut(s)	250
XapI	RAATTY	4 cut(s)	356, 527, 632, 671
XbaI	TCTAGA	1 cut(s)	374
XceI	RCATGY	2 cut(s)	24, 28
XmaI	CCCGGG	2 cut(s)	182, 698
XspI	CTAG	1 cut(s)	375
Zsp2I	ATGCAT	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.