pycom09g04900

Exosome complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0024664
Physical Location & Seq
Reverse (-)
3636712 .. 3637036
325 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 216 bp
ATGTTTTTTCATATCATATGTTCAGAAATGGTGGGATTATCCATAGGAGAAAAGCATGTTATACAGGGTGGCATTGCTCAGGACATTCGTTCTAATGGCCGAAAAAGATTGACTCCTCGGCCCATCAATGTCAAAACTGGAGTTATTTCCCAGGCAAATGGTTCGACAAGGGTCAGGATAGGTGCTACAGATGTCATTGCCGGTGTGAAGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016075 GO:0016078 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034473 GO:0034475 GO:0034476 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071035 GO:0071038 GO:0071042 GO:0071046 GO:0071047 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

72

Amino Acids

7.6

Weight (kDa)

10.91

Isoelectric Point (pI)

26.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 40 - 70 1.2e-07 3' exoribonuclease family, domain 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024664)

Species Orthologous Gene IDs
pyrus_communis pycom09g04900 pycom09g04990
rosa_multiflora Rmu_sc0035439.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 97
AjnI CCWGG 1 cut(s) 150
AoxI GGCC 2 cut(s) 97, 119
AspS9I GGNCC 1 cut(s) 120
BccI CCATC 1 cut(s) 131
BcgI CGANNNNNNTGC 2 cut(s) 144, 178
BciT130I CCWGG 1 cut(s) 152
BfmI CTRYAG 1 cut(s) 186
Bme1390I CCNGG 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 152
BoxI GACNNNNGTC 1 cut(s) 170
BpmI CTGGAG 1 cut(s) 159
Bpu10I CCTNAGC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 116, 150
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 142
Bse3DI GCAATG 2 cut(s) 72, 195
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 2 cut(s) 116, 150
BseMI GCAATG 2 cut(s) 72, 195
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 1 cut(s) 142
BseRI GAGGAG 1 cut(s) 105
BshFI GGCC 2 cut(s) 99, 121
BsiSI CCGG 1 cut(s) 201
BsnI GGCC 2 cut(s) 99, 121
BspANI GGCC 2 cut(s) 99, 121
BspCNI CTCAG 1 cut(s) 91
BsrDI GCAATG 2 cut(s) 72, 195
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 1 cut(s) 142
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 2 cut(s) 116, 150
Bst2UI CCWGG 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 78
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 59
BstPAI GACNNNNGTC 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 150
BstSFI CTRYAG 1 cut(s) 186
BstXI CCANNNNNNTGG 1 cut(s) 158
BsuRI GGCC 2 cut(s) 99, 121
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 120
CviAII CATG 1 cut(s) 56
CviJI RGCY 2 cut(s) 99, 121
CviKI_1 RGCY 2 cut(s) 99, 121
DdeI CTNAG 1 cut(s) 78
EaeI YGGCCR 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 150
FaeI CATG 1 cut(s) 59
FaiI YATR 7 cut(s) 12, 17, 19, 44, 57, 62, 214
FatI CATG 1 cut(s) 55
FauNDI CATATG 1 cut(s) 17
GsuI CTGGAG 1 cut(s) 159
HaeIII GGCC 2 cut(s) 99, 121
HapII CCGG 1 cut(s) 201
Hin1II CATG 1 cut(s) 59
HinfI GANTC 1 cut(s) 112
HpaII CCGG 1 cut(s) 201
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 2 cut(s) 80, 175
HpyAV CCTTC 1 cut(s) 202
HpyF3I CTNAG 1 cut(s) 78
Hsp92II CATG 1 cut(s) 59
LpnPI CCDG 6 cut(s) 50, 65, 123, 137, 160, 164
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 1 cut(s) 126
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
NdeI CATATG 1 cut(s) 17
NlaIII CATG 1 cut(s) 59
NmeAIII GCCGAG 1 cut(s) 97
NspI RCATGY 1 cut(s) 59
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PshAI GACNNNNGTC 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspPI GGNCC 1 cut(s) 120
Sau96I GGNCC 1 cut(s) 120
SchI GAGTC 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 152
SetI ASST 2 cut(s) 184, 213
SfcI CTRYAG 1 cut(s) 186
SgeI CNNG 9 cut(s) 68, 77, 92, 129, 150, 163, 164, 180, 187
StyD4I CCNGG 1 cut(s) 150
TaqI TCGA 1 cut(s) 164
XceI RCATGY 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.