Rmu_sc0035439.1_g000001

Exosome complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035439.1
OG0024664
Physical Location & Seq
Forward (+)
416 .. 1820
1405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035439.1_g000001.1.cds

Sequence Viewer

Length: 522 bp
atggtgggattatctataggagagaagtatttcatacaggctggcattgctcaggaccttcgcactgatggtcggaaaagattgacgcctagacccatctttgttgaaactggaaacatttcccagtcaaatggttcagcaagggtcaggattggtgccacagaagtcattgccagtgtgaaggctgaacttggaaggccgagcgcattgcatcctgacaaaggaaaagtctctataaatgttgattgcagtccaactgcagcaccaatgtttgagggtagagggagtgaggagctgtccgcagaactctcagttgctcttcagcgttgtctattaggtggtaaaagtggatcaggtgctggaattgacctctcttctctggcgattgtggaaggaaagatttgttgggatctttacattgaaggccttgttgttagttcagacggaaatctactagatgccctaggtgctgctattaaggtacttgatattcttaattatttagaactaaatcttatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016075 GO:0016078 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034473 GO:0034475 GO:0034476 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071035 GO:0071038 GO:0071042 GO:0071046 GO:0071047 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

173

Amino Acids

18.15

Weight (kDa)

5.22

Isoelectric Point (pI)

28.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024664)

Species Orthologous Gene IDs
pyrus_communis pycom09g04900 pycom09g04990
rosa_multiflora Rmu_sc0035439.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 155
AciI CCGC 1 cut(s) 300
AclWI GGATC 2 cut(s) 358, 417
AcuI CTGAAG 1 cut(s) 305
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 1 cut(s) 483
AfiI CCNNNNNNNGG 1 cut(s) 221
AgsI TTSAA 2 cut(s) 107, 422
AjuI GAANNNNNNNTTGG 2 cut(s) 388, 420
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
Alw26I GTCTC 1 cut(s) 235
AlwI GGATC 2 cut(s) 358, 417
AlwNI CAGNNNCTG 1 cut(s) 359
AoxI GGCC 2 cut(s) 197, 424
ApeKI GCWGC 2 cut(s) 260, 470
ArsI GACNNNNNNTTYG 2 cut(s) 213, 245
Asp700I GAANNNNTTC 2 cut(s) 29, 118
AspA2I CCTAGG 1 cut(s) 463
AspLEI GCGC 1 cut(s) 206
AspS9I GGNCC 1 cut(s) 55
AvaII GGWCC 1 cut(s) 55
AvrII CCTAGG 1 cut(s) 463
BanI GGYRCC 1 cut(s) 155
BbvI GCAGC 2 cut(s) 272, 457
BccI CCATC 2 cut(s) 62, 104
BcgI CGANNNNNNTGC 2 cut(s) 190, 224
BcoDI GTCTC 1 cut(s) 235
BfaI CTAG 3 cut(s) 90, 455, 464
BfmI CTRYAG 2 cut(s) 15, 258
BisI GCNGC 2 cut(s) 261, 471
BlnI CCTAGG 1 cut(s) 463
BlsI GCNGC 2 cut(s) 262, 472
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 157
BmrI ACTGGG 1 cut(s) 118
BmsI GCATC 2 cut(s) 220, 448
BmuI ACTGGG 1 cut(s) 118
Bpu10I CCTNAGC 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 463
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse1I ACTGG 3 cut(s) 115, 124, 174
Bse3DI GCAATG 3 cut(s) 45, 168, 206
BseDI CCNNGG 1 cut(s) 463
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMI GCAATG 3 cut(s) 45, 168, 206
BseMII CTCAG 2 cut(s) 65, 324
BseNI ACTGG 3 cut(s) 115, 124, 174
BseRI GAGGAG 1 cut(s) 305
BseXI GCAGC 2 cut(s) 272, 457
BshFI GGCC 2 cut(s) 199, 426
BshNI GGYRCC 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 235
BsnI GGCC 2 cut(s) 199, 426
Bsp143I GATC 2 cut(s) 350, 409
BspACI CCGC 1 cut(s) 300
BspANI GGCC 2 cut(s) 199, 426
BspCNI CTCAG 2 cut(s) 64, 323
BspLI GGNNCC 1 cut(s) 157
BspMAI CTGCAG 1 cut(s) 262
BspPI GGATC 2 cut(s) 358, 417
BspQI GCTCTTC 1 cut(s) 324
BspT107I GGYRCC 1 cut(s) 155
BsrDI GCAATG 3 cut(s) 45, 168, 206
BsrI ACTGG 3 cut(s) 115, 124, 174
BssECI CCNNGG 1 cut(s) 463
BssMI GATC 2 cut(s) 350, 409
BssNI GRCGYC 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 463
Bst6I CTCTTC 2 cut(s) 324, 379
BstACI GRCGYC 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 2 cut(s) 51, 310
BstENI CCTNNNNNAGG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 211
BstHHI GCGC 1 cut(s) 206
BstKTI GATC 2 cut(s) 353, 412
BstMAI GTCTC 1 cut(s) 235
BstMBI GATC 2 cut(s) 350, 409
BstMWI GCNNNNNNNGC 2 cut(s) 47, 467
BstSFI CTRYAG 2 cut(s) 15, 258
BstV1I GCAGC 2 cut(s) 272, 457
BstX2I RGATCY 1 cut(s) 409
BstXI CCANNNNNNTGG 1 cut(s) 131
BstYI RGATCY 1 cut(s) 409
BsuRI GGCC 2 cut(s) 199, 426
BtsCI GGATG 1 cut(s) 211
BtsIMutI CAGTG 2 cut(s) 63, 181
Cac8I GCNNGC 1 cut(s) 43
CaiI CAGNNNCTG 1 cut(s) 359
CfoI GCGC 1 cut(s) 206
Cfr13I GGNCC 1 cut(s) 55
CseI GACGC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 482
CviJI RGCY 5 cut(s) 41, 185, 199, 295, 426
CviKI_1 RGCY 5 cut(s) 41, 185, 199, 295, 426
CviQI GTAC 1 cut(s) 482
DdeI CTNAG 2 cut(s) 51, 310
DpnI GATC 2 cut(s) 352, 411
DpnII GATC 2 cut(s) 350, 409
Eam1104I CTCTTC 2 cut(s) 324, 379
EarI CTCTTC 2 cut(s) 324, 379
Eco130I CCWWGG 1 cut(s) 463
Eco147I AGGCCT 1 cut(s) 426
Eco47I GGWCC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 305
EcoNI CCTNNNNNAGG 1 cut(s) 219
EcoO109I RGGNCCY 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 463
ErhI CCWWGG 1 cut(s) 463
FaiI YATR 3 cut(s) 17, 35, 236
Fnu4HI GCNGC 2 cut(s) 261, 471
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 2 cut(s) 261, 471
FspBI CTAG 3 cut(s) 90, 455, 464
GlaI GCGC 1 cut(s) 205
GluI GCNGC 2 cut(s) 261, 471
HaeIII GGCC 2 cut(s) 199, 426
HgaI GACGC 1 cut(s) 94
HhaI GCGC 1 cut(s) 206
Hin1I GRCGYC 1 cut(s) 86
Hin6I GCGC 1 cut(s) 204
HinP1I GCGC 1 cut(s) 204
Hpy188I TCNGA 2 cut(s) 75, 442
Hpy188III TCNNGA 3 cut(s) 53, 148, 215
HpyAV CCTTC 5 cut(s) 68, 175, 189, 386, 416
HpyCH4V TGCA 3 cut(s) 211, 249, 260
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 467
HpyF3I CTNAG 2 cut(s) 51, 310
Hsp92I GRCGYC 1 cut(s) 86
HspAI GCGC 1 cut(s) 204
Kzo9I GATC 2 cut(s) 350, 409
LguI GCTCTTC 1 cut(s) 324
LmnI GCTCC 1 cut(s) 292
Lsp1109I GCAGC 2 cut(s) 272, 457
LweI GCATC 2 cut(s) 220, 448
MaeI CTAG 3 cut(s) 90, 455, 464
MalI GATC 2 cut(s) 352, 411
MboI GATC 2 cut(s) 350, 409
MboII GAAGA 2 cut(s) 311, 366
MflI RGATCY 1 cut(s) 409
MluCI AATT 2 cut(s) 363, 496
MmeI TCCRAC 2 cut(s) 53, 278
MnlI CCTC 4 cut(s) 268, 275, 283, 380
MroXI GAANNNNTTC 2 cut(s) 29, 118
MseI TTAA 3 cut(s) 477, 495, 520
MwoI GCNNNNNNNGC 2 cut(s) 47, 467
NdeII GATC 2 cut(s) 350, 409
NlaIV GGNNCC 1 cut(s) 157
NmeAIII GCCGAG 1 cut(s) 225
PceI AGGCCT 1 cut(s) 426
PciSI GCTCTTC 1 cut(s) 324
PdmI GAANNNNTTC 2 cut(s) 29, 118
PkrI GCNGC 2 cut(s) 262, 472
PpuMI RGGWCCY 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 157
PspPI GGNCC 1 cut(s) 55
PspPPI RGGWCCY 1 cut(s) 55
PstI CTGCAG 1 cut(s) 262
PstNI CAGNNNCTG 1 cut(s) 359
PsuI RGATCY 1 cut(s) 409
RsaI GTAC 1 cut(s) 483
RsaNI GTAC 1 cut(s) 482
SapI GCTCTTC 1 cut(s) 324
SaqAI TTAA 3 cut(s) 477, 495, 520
SatI GCNGC 2 cut(s) 261, 471
Sau3AI GATC 2 cut(s) 350, 409
Sau96I GGNCC 1 cut(s) 55
SetI ASST 7 cut(s) 60, 297, 340, 358, 372, 469, 483
SfaNI GCATC 2 cut(s) 220, 448
SfcI CTRYAG 2 cut(s) 15, 258
SinI GGWCC 1 cut(s) 55
Sse9I AATT 2 cut(s) 363, 496
SseBI AGGCCT 1 cut(s) 426
SsiI CCGC 1 cut(s) 300
SspMI CTAG 3 cut(s) 90, 455, 464
StuI AGGCCT 1 cut(s) 426
StyI CCWWGG 1 cut(s) 463
TasI AATT 2 cut(s) 363, 496
Tru1I TTAA 3 cut(s) 477, 495, 520
Tru9I TTAA 3 cut(s) 477, 495, 520
TscAI CASTG 2 cut(s) 70, 181
TseI GCWGC 2 cut(s) 260, 470
TspDTI ATGAA 1 cut(s) 22
TspGWI ACGGA 1 cut(s) 459
TspRI CASTG 2 cut(s) 70, 181
VpaK11BI GGWCC 1 cut(s) 55
XagI CCTNNNNNAGG 1 cut(s) 219
XmaJI CCTAGG 1 cut(s) 463
XmnI GAANNNNTTC 2 cut(s) 29, 118
XspI CTAG 3 cut(s) 90, 455, 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.