pycom09g06710
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0020422
Physical Location & Seq
Reverse (-)
4948967 .. 4952694
3728 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 675 bp
ATGCATACGAATACGATCACGATGTCGAAGAAAGAAATTATGAAAGGTAGTTCTCATAGAATTGGAGTGAGGAAATACCACAAATCTGAGCTTCCACGCTTGCGGTGGACATCTCACCTGCATGAACTCTTTGTTGAAGCTGTTCAAAGCCTTGGCGGAAAATACAAGGCCACTCCCAAGCGGATTTTGCAGATGATGAGTGTGAAGGGACTGGAAATTTCTCATGTCAAAAGCCATCTGCAGATGTACAGGAGCTTCAAGGATAATAACATCAATGTTTTTTCTGAAGATCACAGCAGTAGTGTCTTCTCAGCTTTCCCAAGTCAAACTCATCAAAGGTCATCAGAGAATTATGTAAGATACGATGAGCTAAAAGACATGGAACATGTACCGCATTCTGAATCTGACGAGGAAGCTGCTGGCAAGCAACATGCTATACACCAGAATAGTCATACATCAGAACTCAGCAGATTGTCTATGGATGATCGAACTTGTCAACTGTACGGACTTTGTGAGCTCTCATTGTCGTTTGATCCGGTGACGAACCGAAACCAAAGAGAGAGACAGTTTCGGCCTTCAGCTGATGAGCACTCTAGTTCGGAATCAACCTCAACTGGCAATTTCAGTAACATTCAAGTTGCAGGCAATCACATAAACTTAGACTTAACCATTTGA

Protein Analysis

225

Amino Acids

25.69

Weight (kDa)

7.31

Isoelectric Point (pI)

55.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 33 - 84 1.7e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020422)

Species Orthologous Gene IDs
prunus_persica Prupe.3G178600_v2.0.a1 Prupe.3G178600_v2.0.a1 Prupe.3G178600_v2.0.a1 Prupe.3G178600_v2.0.a1 Prupe.3G178600_v2.0.a1
pyrus_communis pycom09g06710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 126
Acc36I ACCTGC 1 cut(s) 126
AciI CCGC 4 cut(s) 103, 156, 181, 392
AclWI GGATC 1 cut(s) 527
AcsI RAATTY 1 cut(s) 216
AcuI CTGAAG 2 cut(s) 306, 561
AfaI GTAC 3 cut(s) 248, 390, 503
AflIII ACRYGT 1 cut(s) 385
AgsI TTSAA 4 cut(s) 137, 146, 259, 635
AluBI AGCT 8 cut(s) 91, 140, 255, 314, 370, 416, 517, 581
AluI AGCT 8 cut(s) 91, 140, 255, 314, 370, 416, 517, 581
Alw21I GWGCWC 2 cut(s) 519, 591
Alw26I GTCTC 1 cut(s) 556
AlwI GGATC 1 cut(s) 527
AoxI GGCC 2 cut(s) 168, 572
ApeKI GCWGC 1 cut(s) 416
ApoI RAATTY 1 cut(s) 216
Asp700I GAANNNNTTC 1 cut(s) 141
AsuHPI GGTGA 2 cut(s) 107, 550
BanII GRGCYC 1 cut(s) 519
BarI GAAGNNNNNNTAC 2 cut(s) 239, 271
BbsI GAAGAC 1 cut(s) 298
Bbv12I GWGCWC 2 cut(s) 519, 591
BbvI GCAGC 1 cut(s) 403
BccI CCATC 1 cut(s) 243
BcgI CGANNNNNNTGC 2 cut(s) 398, 432
BcoDI GTCTC 1 cut(s) 556
BfaI CTAG 1 cut(s) 594
BfmI CTRYAG 1 cut(s) 239
BfuAI ACCTGC 1 cut(s) 126
BisI GCNGC 1 cut(s) 417
BlsI GCNGC 1 cut(s) 418
BpiI GAAGAC 1 cut(s) 298
BsaJI CCNNGG 1 cut(s) 151
BsaWI WCCGGW 1 cut(s) 535
Bse1I ACTGG 2 cut(s) 216, 619
BseDI CCNNGG 1 cut(s) 151
BseGI GGATG 1 cut(s) 487
BseMII CTCAG 3 cut(s) 78, 324, 478
BseNI ACTGG 2 cut(s) 216, 619
BseXI GCAGC 1 cut(s) 403
BshFI GGCC 2 cut(s) 170, 574
BsiHKAI GWGCWC 2 cut(s) 519, 591
BsiSI CCGG 1 cut(s) 536
BslFI GGGAC 1 cut(s) 222
BsmAI GTCTC 1 cut(s) 556
BsmFI GGGAC 1 cut(s) 222
BsmI GAATGC 1 cut(s) 394
BsnI GGCC 2 cut(s) 170, 574
Bsp1286I GDGCHC 2 cut(s) 519, 591
Bsp1407I TGTACA 1 cut(s) 246
Bsp143I GATC 4 cut(s) 15, 289, 484, 532
BspACI CCGC 4 cut(s) 103, 156, 181, 392
BspANI GGCC 2 cut(s) 170, 574
BspCNI CTCAG 3 cut(s) 79, 323, 477
BspMAI CTGCAG 1 cut(s) 243
BspMI ACCTGC 1 cut(s) 126
BspPI GGATC 1 cut(s) 527
BsrGI TGTACA 1 cut(s) 246
BsrI ACTGG 2 cut(s) 216, 619
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 4 cut(s) 15, 289, 484, 532
BssT1I CCWWGG 1 cut(s) 151
Bst4CI ACNGT 2 cut(s) 501, 567
BstAUI TGTACA 1 cut(s) 246
BstC8I GCNNGC 4 cut(s) 101, 421, 425, 643
BstDEI CTNAG 4 cut(s) 87, 310, 464, 658
BstF5I GGATG 1 cut(s) 487
BstKTI GATC 4 cut(s) 18, 292, 487, 535
BstMAI GTCTC 1 cut(s) 556
BstMBI GATC 4 cut(s) 15, 289, 484, 532
BstMWI GCNNNNNNNGC 1 cut(s) 187
BstNSI RCATGY 2 cut(s) 389, 434
BstSFI CTRYAG 1 cut(s) 239
BstV1I GCAGC 1 cut(s) 403
BstV2I GAAGAC 1 cut(s) 298
BsuRI GGCC 2 cut(s) 170, 574
BtsCI GGATG 1 cut(s) 487
BveI ACCTGC 1 cut(s) 126
Cac8I GCNNGC 4 cut(s) 101, 421, 425, 643
Csp6I GTAC 3 cut(s) 247, 389, 502
CviAII CATG 5 cut(s) 122, 224, 379, 386, 431
CviQI GTAC 3 cut(s) 247, 389, 502
DdeI CTNAG 4 cut(s) 87, 310, 464, 658
DpnI GATC 4 cut(s) 17, 291, 486, 534
DpnII GATC 4 cut(s) 15, 289, 484, 532
EciI GGCGGA 1 cut(s) 171
Ecl136II GAGCTC 1 cut(s) 517
Eco130I CCWWGG 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 519
Eco53kI GAGCTC 1 cut(s) 517
Eco57I CTGAAG 2 cut(s) 306, 561
EcoICRI GAGCTC 1 cut(s) 517
EcoT14I CCWWGG 1 cut(s) 151
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 519
ErhI CCWWGG 1 cut(s) 151
FaeI CATG 5 cut(s) 125, 227, 382, 389, 434
FaqI GGGAC 1 cut(s) 222
FatI CATG 5 cut(s) 121, 223, 378, 385, 430
Fnu4HI GCNGC 1 cut(s) 417
FokI GGATG 1 cut(s) 494
FriOI GRGCYC 1 cut(s) 519
Fsp4HI GCNGC 1 cut(s) 417
FspBI CTAG 1 cut(s) 594
GluI GCNGC 1 cut(s) 417
HaeIII GGCC 2 cut(s) 170, 574
HapII CCGG 1 cut(s) 536
Hin1II CATG 5 cut(s) 125, 227, 382, 389, 434
HincII GTYRAC 1 cut(s) 497
HindII GTYRAC 1 cut(s) 497
HinfI GANTC 2 cut(s) 401, 602
HpaII CCGG 1 cut(s) 536
HphI GGTGA 2 cut(s) 107, 550
Hpy166II GTNNAC 2 cut(s) 108, 497
Hpy188I TCNGA 7 cut(s) 88, 286, 346, 400, 406, 460, 601
Hpy188III TCNNGA 1 cut(s) 19
Hpy8I GTNNAC 2 cut(s) 108, 497
HpyAV CCTTC 2 cut(s) 199, 585
HpyCH4III ACNGT 2 cut(s) 501, 567
HpyCH4V TGCA 5 cut(s) 4, 121, 190, 241, 641
HpyF10VI GCNNNNNNNGC 1 cut(s) 187
HpyF3I CTNAG 4 cut(s) 87, 310, 464, 658
Hsp92II CATG 5 cut(s) 125, 227, 382, 389, 434
Kzo9I GATC 4 cut(s) 15, 289, 484, 532
LmnI GCTCC 1 cut(s) 252
LpnPI CCDG 8 cut(s) 131, 197, 235, 405, 455, 549, 600, 627
Lsp1109I GCAGC 1 cut(s) 403
MaeI CTAG 1 cut(s) 594
MaeIII GTNAC 2 cut(s) 538, 626
MalI GATC 4 cut(s) 17, 291, 486, 534
MboI GATC 4 cut(s) 15, 289, 484, 532
MboII GAAGA 3 cut(s) 40, 298, 299
MhlI GDGCHC 2 cut(s) 519, 591
MluCI AATT 5 cut(s) 36, 60, 216, 349, 619
MnlI CCTC 3 cut(s) 63, 403, 619
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 141
MseI TTAA 1 cut(s) 665
MslI CAYNNNNRTG 1 cut(s) 120
MspA1I CMGCKG 1 cut(s) 581
MspI CCGG 1 cut(s) 536
Mva1269I GAATGC 1 cut(s) 394
MwoI GCNNNNNNNGC 1 cut(s) 187
NdeII GATC 4 cut(s) 15, 289, 484, 532
NlaIII CATG 5 cut(s) 125, 227, 382, 389, 434
NmuCI GTSAC 1 cut(s) 538
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 389, 434
PaqCI CACCTGC 1 cut(s) 126
PciI ACATGT 1 cut(s) 385
PctI GAATGC 1 cut(s) 394
PdmI GAANNNNTTC 1 cut(s) 141
PfeI GAWTC 2 cut(s) 401, 602
PkrI GCNGC 1 cut(s) 418
PscI ACATGT 1 cut(s) 385
Psp124BI GAGCTC 1 cut(s) 519
PstI CTGCAG 1 cut(s) 243
PvuII CAGCTG 1 cut(s) 581
RsaI GTAC 3 cut(s) 248, 390, 503
RsaNI GTAC 3 cut(s) 247, 389, 502
RseI CAYNNNNRTG 1 cut(s) 120
SacI GAGCTC 1 cut(s) 519
SaqAI TTAA 1 cut(s) 665
SatI GCNGC 1 cut(s) 417
Sau3AI GATC 4 cut(s) 15, 289, 484, 532
SduI GDGCHC 2 cut(s) 519, 591
SfcI CTRYAG 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 120
Sse9I AATT 5 cut(s) 36, 60, 216, 349, 619
SsiI CCGC 4 cut(s) 103, 156, 181, 392
SspMI CTAG 1 cut(s) 594
SstI GAGCTC 1 cut(s) 519
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 2 cut(s) 501, 567
TaqI TCGA 2 cut(s) 26, 487
TasI AATT 5 cut(s) 36, 60, 216, 349, 619
TatI WGTACW 1 cut(s) 246
TfiI GAWTC 2 cut(s) 401, 602
Tru1I TTAA 1 cut(s) 665
Tru9I TTAA 1 cut(s) 665
TseFI GTSAC 1 cut(s) 538
TseI GCWGC 1 cut(s) 416
Tsp45I GTSAC 1 cut(s) 538
TspDTI ATGAA 2 cut(s) 56, 138
TspGWI ACGGA 1 cut(s) 519
XapI RAATTY 1 cut(s) 216
XceI RCATGY 2 cut(s) 389, 434
XcmI CCANNNNNNNNNTGG 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 141
XspI CTAG 1 cut(s) 594
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.