Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0029361

Physical Location & Seq

Genomic Coordinates Forward (+)

6057055 .. 6058459

Gene Structure 1405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g07930.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAGACACACATTATATTCATCTATTCATACAACAAAATTCTTTTCTTCGTCTTTCAGTCTCCACTTTCTCACGGTAATATCTTTATCTTTTTCTCTCTCTGAAATTTCAAAGTCCTCGCCCGTTTCTTCGCCCGTACCGAAACGCGCATCCCATTGGACGGGAGATCGCATCGCAGTTCGAAACGTCTTTAATTGCACGCACTCCCGTTTTCATTTCCGGCGTTTCGATCCTGCAAAACAATTTGAACGTCGTTTCGTTGGTTGCAGATCGAAGAAAGACGTTTTCTTTGTCTCGCTGCGACCTCCATGCTGTGTCTCTGAATCGGAGGGTCAGTGTTTGTTTGCTGCCATGGCCAGGGTCAGATCGTCGTCGTCGAGCAGATTGAGGTACTGCAACCCGGCGTATTATTTGAAGCGGCCGCAACGCCTGGCTTTGCTCTTCATAGCATTCGTTTGCATCTCTCTGGTTGTTTGGGACCGCCAGACTCTCCTCAAAGAGCACGAGTGCAGGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004571 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0006491 GO:0006807 GO:0008150 GO:0008152 GO:0009100 GO:0009987 GO:0012505 GO:0015923 GO:0015924 GO:0016020 GO:0016787 GO:0016798 GO:0019538 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

Glyco_hydro_47

Protein Analysis

174

Amino Acids

20.1

Weight (kDa)

10.38

Isoelectric Point (pI)

63.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029361)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g07930 pycom17g13920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	147
AciI	CCGC	3 cut(s)	418, 422, 481
AclWI	GGATC	1 cut(s)	224
AcoI	YGGCCR	2 cut(s)	354, 419
AcsI	RAATTY	2 cut(s)	38, 105
AfaI	GTAC	2 cut(s)	138, 392
AfiI	CCNNNNNNNGG	2 cut(s)	160, 357
AgsI	TTSAA	3 cut(s)	111, 248, 415
AjnI	CCWGG	2 cut(s)	356, 429
Alw21I	GWGCWC	1 cut(s)	504
Alw26I	GTCTC	3 cut(s)	65, 298, 322
AlwI	GGATC	1 cut(s)	224
AoxI	GGCC	2 cut(s)	354, 419
ApeKI	GCWGC	2 cut(s)	298, 347
ApoI	RAATTY	2 cut(s)	38, 105
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	478
AsuC2I	CCSGG	1 cut(s)	401
AsuII	TTCGAA	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	478
BalI	TGGCCA	1 cut(s)	356
BauI	CACGAG	1 cut(s)	503
Bbv12I	GWGCWC	1 cut(s)	504
BbvI	GCAGC	2 cut(s)	285, 334
BcgI	CGANNNNNNTGC	2 cut(s)	291, 325
BciT130I	CCWGG	2 cut(s)	358, 431
BcnI	CCSGG	1 cut(s)	401
BcoDI	GTCTC	3 cut(s)	65, 298, 322
BisI	GCNGC	4 cut(s)	299, 348, 419, 422
BlsI	GCNGC	4 cut(s)	300, 349, 420, 423
Bme1390I	CCNGG	3 cut(s)	358, 401, 431
Bme18I	GGWCC	1 cut(s)	478
BmgT120I	GGNCC	1 cut(s)	478
BmiI	GGNNCC	1 cut(s)	479
BmrFI	CCNGG	3 cut(s)	358, 401, 431
BmsI	GCATC	3 cut(s)	158, 180, 468
Bpu14I	TTCGAA	1 cut(s)	181
BpuMI	CCSGG	1 cut(s)	401
BsaJI	CCNNGG	2 cut(s)	351, 357
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 357
BseBI	CCWGG	2 cut(s)	358, 431
BseDI	CCNNGG	2 cut(s)	351, 357
BseGI	GGATG	1 cut(s)	149
BseLI	CCNNNNNNNGG	2 cut(s)	160, 357
BseRI	GAGGAG	1 cut(s)	482
BseX3I	CGGCCG	1 cut(s)	419
BseXI	GCAGC	2 cut(s)	285, 334
Bsh1236I	CGCG	1 cut(s)	147
Bsh1285I	CGRYCG	1 cut(s)	422
BshFI	GGCC	2 cut(s)	356, 421
BsiEI	CGRYCG	1 cut(s)	422
BsiHKAI	GWGCWC	1 cut(s)	504
BsiSI	CCGG	2 cut(s)	220, 401
BslFI	GGGAC	1 cut(s)	491
BslI	CCNNNNNNNGG	2 cut(s)	160, 357
BsmAI	GTCTC	3 cut(s)	65, 298, 322
BsmFI	GGGAC	1 cut(s)	491
BsmI	GAATGC	1 cut(s)	449
BsnI	GGCC	2 cut(s)	356, 421
Bsp119I	TTCGAA	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	504
Bsp143I	GATC	4 cut(s)	166, 229, 269, 365
Bsp19I	CCATGG	1 cut(s)	351
BspACI	CCGC	3 cut(s)	418, 422, 481
BspANI	GGCC	2 cut(s)	356, 421
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	479
BspPI	GGATC	1 cut(s)	224
BspQI	GCTCTTC	1 cut(s)	446
BspT104I	TTCGAA	1 cut(s)	181
BssECI	CCNNGG	2 cut(s)	351, 357
BssMI	GATC	4 cut(s)	166, 229, 269, 365
BssSI	CACGAG	1 cut(s)	503
BssT1I	CCWWGG	1 cut(s)	351
Bst2BI	CACGAG	1 cut(s)	503
Bst2UI	CCWGG	2 cut(s)	358, 431
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	446
BstBI	TTCGAA	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	200
BstDSI	CCRYGG	1 cut(s)	351
BstF5I	GGATG	1 cut(s)	149
BstFNI	CGCG	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	4 cut(s)	169, 232, 272, 368
BstMAI	GTCTC	3 cut(s)	65, 298, 322
BstMBI	GATC	4 cut(s)	166, 229, 269, 365
BstMCI	CGRYCG	1 cut(s)	422
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstNI	CCWGG	2 cut(s)	358, 431
BstSCI	CCNGG	3 cut(s)	356, 399, 429
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	2 cut(s)	285, 334
BstZI	CGGCCG	1 cut(s)	419
BsuRI	GGCC	2 cut(s)	356, 421
BtgI	CCRYGG	1 cut(s)	351
BtgZI	GCGATG	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	149
BtsIMutI	CAGTG	1 cut(s)	341
Cac8I	GCNNGC	1 cut(s)	200
CciNI	GCGGCCGC	1 cut(s)	419
CfoI	GCGC	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	478
Csp6I	GTAC	2 cut(s)	137, 391
CviAII	CATG	2 cut(s)	309, 352
CviJI	RGCY	3 cut(s)	356, 421, 434
CviKI_1	RGCY	3 cut(s)	356, 421, 434
CviQI	GTAC	2 cut(s)	137, 391
DpnI	GATC	4 cut(s)	168, 231, 271, 367
DpnII	GATC	4 cut(s)	166, 229, 269, 365
EaeI	YGGCCR	2 cut(s)	354, 419
EagI	CGGCCG	1 cut(s)	419
Eam1104I	CTCTTC	1 cut(s)	446
EarI	CTCTTC	1 cut(s)	446
EclXI	CGGCCG	1 cut(s)	419
Eco130I	CCWWGG	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	478
Eco52I	CGGCCG	1 cut(s)	419
EcoRII	CCWGG	2 cut(s)	356, 429
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	2 cut(s)	312, 355
FaiI	YATR	5 cut(s)	16, 30, 310, 353, 446
FaqI	GGGAC	1 cut(s)	491
FatI	CATG	2 cut(s)	308, 351
Fnu4HI	GCNGC	4 cut(s)	299, 348, 419, 422
FokI	GGATG	1 cut(s)	136
Fsp4HI	GCNGC	4 cut(s)	299, 348, 419, 422
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	4 cut(s)	299, 348, 419, 422
HaeIII	GGCC	2 cut(s)	356, 421
HapII	CCGG	2 cut(s)	220, 401
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	2 cut(s)	312, 355
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HinfI	GANTC	2 cut(s)	323, 487
HpaII	CCGG	2 cut(s)	220, 401
Hpy188I	TCNGA	4 cut(s)	103, 322, 328, 365
Hpy99I	CGWCG	4 cut(s)	255, 373, 376, 379
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4IV	ACGT	3 cut(s)	186, 250, 282
HpyCH4V	TGCA	6 cut(s)	198, 236, 267, 396, 459, 510
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpySE526I	ACGT	3 cut(s)	186, 250, 282
Hsp92II	CATG	2 cut(s)	312, 355
HspAI	GCGC	1 cut(s)	147
Kzo9I	GATC	4 cut(s)	166, 229, 269, 365
LguI	GCTCTTC	1 cut(s)	446
Lsp1109I	GCAGC	2 cut(s)	285, 334
LweI	GCATC	3 cut(s)	158, 180, 468
MaeII	ACGT	3 cut(s)	186, 250, 282
MalI	GATC	4 cut(s)	168, 231, 271, 367
MboI	GATC	4 cut(s)	166, 229, 269, 365
MboII	GAAGA	4 cut(s)	39, 120, 286, 433
MhlI	GDGCHC	1 cut(s)	504
MlsI	TGGCCA	1 cut(s)	356
MluCI	AATT	4 cut(s)	38, 105, 193, 242
MluNI	TGGCCA	1 cut(s)	356
MlyI	GAGTC	1 cut(s)	481
MnlI	CCTC	5 cut(s)	127, 315, 322, 381, 503
Mox20I	TGGCCA	1 cut(s)	356
MscI	TGGCCA	1 cut(s)	356
MseI	TTAA	1 cut(s)	192
Msp20I	TGGCCA	1 cut(s)	356
MspI	CCGG	2 cut(s)	220, 401
MspR9I	CCNGG	3 cut(s)	358, 401, 431
Mva1269I	GAATGC	1 cut(s)	449
MvaI	CCWGG	2 cut(s)	358, 431
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	1 cut(s)	353
NciI	CCSGG	1 cut(s)	401
NcoI	CCATGG	1 cut(s)	351
NdeII	GATC	4 cut(s)	166, 229, 269, 365
NlaIII	CATG	2 cut(s)	312, 355
NlaIV	GGNNCC	1 cut(s)	479
NotI	GCGGCCGC	1 cut(s)	419
NspV	TTCGAA	1 cut(s)	181
PciSI	GCTCTTC	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	2 cut(s)	137, 374
PctI	GAATGC	1 cut(s)	449
PfeI	GAWTC	1 cut(s)	323
PkrI	GCNGC	4 cut(s)	300, 349, 420, 423
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
Psp6I	CCWGG	2 cut(s)	356, 429
PspGI	CCWGG	2 cut(s)	356, 429
PspN4I	GGNNCC	1 cut(s)	479
PspPI	GGNCC	1 cut(s)	478
RsaI	GTAC	2 cut(s)	138, 392
RsaNI	GTAC	2 cut(s)	137, 391
SapI	GCTCTTC	1 cut(s)	446
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	4 cut(s)	299, 348, 419, 422
Sau3AI	GATC	4 cut(s)	166, 229, 269, 365
Sau96I	GGNCC	1 cut(s)	478
SchI	GAGTC	1 cut(s)	481
ScrFI	CCNGG	3 cut(s)	358, 401, 431
SduI	GDGCHC	1 cut(s)	504
SetI	ASST	5 cut(s)	189, 253, 285, 307, 392
SfaNI	GCATC	3 cut(s)	158, 180, 468
SfuI	TTCGAA	1 cut(s)	181
SinI	GGWCC	1 cut(s)	478
Sse9I	AATT	4 cut(s)	38, 105, 193, 242
SsiI	CCGC	3 cut(s)	418, 422, 481
StyD4I	CCNGG	3 cut(s)	356, 399, 429
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	76
TaiI	ACGT	3 cut(s)	189, 253, 285
TaqI	TCGA	4 cut(s)	181, 228, 272, 377
TasI	AATT	4 cut(s)	38, 105, 193, 242
TauI	GCSGC	2 cut(s)	421, 424
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	1 cut(s)	341
TseI	GCWGC	2 cut(s)	298, 347
TspDTI	ATGAA	4 cut(s)	9, 17, 203, 433
TspRI	CASTG	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	478
XapI	RAATTY	2 cut(s)	38, 105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.