Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0029363

Physical Location & Seq

Genomic Coordinates Forward (+)

9483552 .. 9489033

Gene Structure 5482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAACGTTGGCGATGAGGTCGTCGCTGCAGCTCCAGGGGGTCCTCCACCGCCTCTGGAGTGGAAATTCTCTCAGGTCTTTGGCGAGCGTACAGCCGGTGAAGAAGTTCAGGAAGTTGACATTATTTCTGCTATTGAATTTGATAAAAGTGGCGACCATCTTGCTACTGGTGACCGTGGGGGCCGGGTGGTTCTCTTTGAGAGAACAGATTTGAAAGATCATGGTGGCTCCAGAAGGGATTTGGAGAGGATGGATTATCCAACTAGTAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGCCATGAACCTGAGTTCGACTATCTGAAGAGTTTGGAAATAGAGGAGAAAATAAACAAAATCAGATGGTGCCAAACAGCCAATGGTGCCTTGTTTCTTCTATCTACTAATGATAAAACAATTAAGTTTTGGAAGCCCTGTCCAAGAAAAGAAGGTGAAGAAAATTTCAGAAATGAATGTGGATCCTTCATATCTAAAGCTGTAGGAAATGGCAGTCTTGCTAGTTCAAGTAATTTGAGTAGCCCTAAAACGTTTCTTGCAAACGGAGGATGCCCAGACAGATCAGTCAGTTGTCTGAGCAATGATATTTCATTTCCACCAGGAGGCATTCCCTTGTTACGATTGCCACAGGTAACTAGCCATGAGACTAGCCTAGTCGCTAGATGTCGAAGAGTGTATGCCCATGCTCATGATTATCATATCAATTCAATTTCAAACAACAGTGATGGTGAAACTTTTATTTCGGCTGATGATCTGCCAATAAATCTTTGGAACTTGGAAATTAGCAATCAAAGTTTCAATATTGTTGATGTGAAGCCTGCAAACATGGAAGATTTAACCGAGGTGATAACATCAGCAGAGTTCCACCCTACCCATTGTAATACGTTAGCCTACAGCAGTTCCAAGGGCTCCATTCGACTCATTGATTTGCGCCAATCCGCCTTGTGTGATTCTCATGCTAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000159 GO:0000278 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008287 GO:0009987 GO:0010921 GO:0016311 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0032502 GO:0032991 GO:0035303 GO:0035304 GO:0036211 GO:0043170 GO:0043412 GO:0043666 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0060255 GO:0065007 GO:0065009 GO:0070262 GO:0071704 GO:0080090 GO:0098772 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04151 ko04152 ko04261 ko04390 ko04391 ko04530 ko04728 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04151 map04152 map04261 map04390 map04391 map04530 map04728 map05142 map05160 map05165

Pfam Domains

Protein Families

WD40

Protein Analysis

331

Amino Acids

36.69

Weight (kDa)

5.42

Isoelectric Point (pI)

46.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029363)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g11250
rosa_samantha	Rh2CG412500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	587
AccB1I	GGYRCC	2 cut(s)	372, 389
AciI	CCGC	2 cut(s)	50, 963
AclI	AACGTT	2 cut(s)	6, 554
AclWI	GGATC	2 cut(s)	480, 493
AcsI	RAATTY	4 cut(s)	65, 137, 466, 986
AcuI	CTGAAG	1 cut(s)	350
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	1 cut(s)	626
AgsI	TTSAA	6 cut(s)	137, 214, 531, 732, 738, 823
AhlI	ACTAGT	1 cut(s)	263
AjnI	CCWGG	2 cut(s)	34, 622
AluBI	AGCT	2 cut(s)	32, 503
AluI	AGCT	2 cut(s)	32, 503
Alw26I	GTCTC	1 cut(s)	662
AlwI	GGATC	2 cut(s)	480, 493
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	2 cut(s)	26, 29
ApoI	RAATTY	4 cut(s)	65, 137, 466, 986
Asp700I	GAANNNNTTC	1 cut(s)	105
AspLEI	GCGC	1 cut(s)	957
AspS9I	GGNCC	2 cut(s)	41, 181
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	5 cut(s)	110, 182, 470, 764, 880
AvaII	GGWCC	1 cut(s)	41
BamHI	GGATCC	1 cut(s)	485
BanI	GGYRCC	2 cut(s)	372, 389
BanII	GRGCYC	1 cut(s)	935
BbvI	GCAGC	2 cut(s)	13, 41
BccI	CCATC	4 cut(s)	165, 244, 363, 743
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BciT130I	CCWGG	2 cut(s)	36, 624
BcnI	CCSGG	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	662
BcuI	ACTAGT	1 cut(s)	263
BfaI	CTAG	6 cut(s)	264, 525, 660, 672, 677, 684
BfmI	CTRYAG	3 cut(s)	27, 504, 916
BisI	GCNGC	2 cut(s)	27, 30
BlsI	GCNGC	2 cut(s)	28, 31
Bme1390I	CCNGG	3 cut(s)	36, 185, 624
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	2 cut(s)	41, 181
BmiI	GGNNCC	7 cut(s)	42, 182, 229, 374, 391, 487, 934
BmrFI	CCNGG	3 cut(s)	36, 185, 624
BmsI	GCATC	2 cut(s)	280, 563
BpmI	CTGGAG	3 cut(s)	18, 77, 214
BpuMI	CCSGG	1 cut(s)	185
BsaJI	CCNNGG	4 cut(s)	35, 175, 864, 927
Bsc4I	CCNNNNNNNGG	1 cut(s)	626
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	610
BseBI	CCWGG	2 cut(s)	36, 624
BseDI	CCNNGG	4 cut(s)	35, 175, 864, 927
BseGI	GGATG	3 cut(s)	255, 271, 578
BseLI	CCNNNNNNNGG	1 cut(s)	626
BseMI	GCAATG	1 cut(s)	610
BseMII	CTCAG	4 cut(s)	86, 267, 306, 590
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	2 cut(s)	13, 41
BshFI	GGCC	1 cut(s)	183
BshNI	GGYRCC	2 cut(s)	372, 389
BsiSI	CCGG	2 cut(s)	96, 184
BslI	CCNNNNNNNGG	1 cut(s)	626
BsmAI	GTCTC	1 cut(s)	662
BsmI	GAATGC	1 cut(s)	630
BsnI	GGCC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	935
Bsp143I	GATC	4 cut(s)	217, 485, 584, 775
BspACI	CCGC	2 cut(s)	50, 963
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	4 cut(s)	85, 268, 307, 591
BspHI	TCATGA	1 cut(s)	712
BspLI	GGNNCC	7 cut(s)	42, 182, 229, 374, 391, 487, 934
BspMAI	CTGCAG	1 cut(s)	31
BspPI	GGATC	2 cut(s)	480, 493
BspT107I	GGYRCC	2 cut(s)	372, 389
BsrDI	GCAATG	1 cut(s)	610
BsrFI	RCCGGY	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	172
BssAI	RCCGGY	1 cut(s)	95
BssECI	CCNNGG	4 cut(s)	35, 175, 864, 927
BssMI	GATC	4 cut(s)	217, 485, 584, 775
BssT1I	CCWWGG	1 cut(s)	927
Bst2UI	CCWGG	2 cut(s)	36, 624
Bst4CI	ACNGT	2 cut(s)	176, 746
Bst6I	CTCTTC	2 cut(s)	326, 688
BstC8I	GCNNGC	2 cut(s)	86, 843
BstDEI	CTNAG	4 cut(s)	72, 276, 315, 599
BstDSI	CCRYGG	1 cut(s)	175
BstEII	GGTNACC	1 cut(s)	170
BstF5I	GGATG	3 cut(s)	255, 271, 578
BstHHI	GCGC	1 cut(s)	957
BstKTI	GATC	4 cut(s)	220, 488, 587, 778
BstMAI	GTCTC	1 cut(s)	662
BstMBI	GATC	4 cut(s)	217, 485, 584, 775
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstNI	CCWGG	2 cut(s)	36, 624
BstPI	GGTNACC	1 cut(s)	170
BstSCI	CCNGG	3 cut(s)	34, 183, 622
BstSFI	CTRYAG	3 cut(s)	27, 504, 916
BstV1I	GCAGC	2 cut(s)	13, 41
BstX2I	RGATCY	1 cut(s)	485
BstYI	RGATCY	1 cut(s)	485
BsuRI	GGCC	1 cut(s)	183
BtgI	CCRYGG	1 cut(s)	175
BtgZI	GCGATG	1 cut(s)	27
BtsCI	GGATG	3 cut(s)	255, 271, 578
BtsIMutI	CAGTG	1 cut(s)	751
Cac8I	GCNNGC	2 cut(s)	86, 843
CciI	TCATGA	1 cut(s)	712
CfoI	GCGC	1 cut(s)	957
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	2 cut(s)	41, 181
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	7 cut(s)	221, 308, 665, 707, 713, 850, 980
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	4 cut(s)	72, 276, 315, 599
DpnI	GATC	4 cut(s)	219, 487, 586, 777
DpnII	GATC	4 cut(s)	217, 485, 584, 775
DrdI	GACNNNNNNGTC	1 cut(s)	587
DseDI	GACNNNNNNGTC	1 cut(s)	587
Eam1104I	CTCTTC	2 cut(s)	326, 688
EarI	CTCTTC	2 cut(s)	326, 688
EciI	GGCGGA	1 cut(s)	952
Eco130I	CCWWGG	1 cut(s)	927
Eco24I	GRGCYC	1 cut(s)	935
Eco47I	GGWCC	1 cut(s)	41
Eco57I	CTGAAG	1 cut(s)	350
Eco91I	GGTNACC	1 cut(s)	170
EcoO109I	RGGNCCY	1 cut(s)	41
EcoO65I	GGTNACC	1 cut(s)	170
EcoRII	CCWGG	2 cut(s)	34, 622
EcoT14I	CCWWGG	1 cut(s)	927
EcoT38I	GRGCYC	1 cut(s)	935
ErhI	CCWWGG	1 cut(s)	927
FaeI	CATG	7 cut(s)	224, 311, 668, 710, 716, 853, 983
FatI	CATG	7 cut(s)	220, 307, 664, 706, 712, 849, 979
Fnu4HI	GCNGC	2 cut(s)	27, 30
FokI	GGATG	3 cut(s)	258, 262, 585
FriOI	GRGCYC	1 cut(s)	935
Fsp4HI	GCNGC	2 cut(s)	27, 30
FspBI	CTAG	6 cut(s)	264, 525, 660, 672, 677, 684
GlaI	GCGC	1 cut(s)	956
GluI	GCNGC	2 cut(s)	27, 30
GsuI	CTGGAG	3 cut(s)	18, 77, 214
HaeIII	GGCC	1 cut(s)	183
HapII	CCGG	2 cut(s)	96, 184
HhaI	GCGC	1 cut(s)	957
Hin1II	CATG	7 cut(s)	224, 311, 668, 710, 716, 853, 983
Hin6I	GCGC	1 cut(s)	955
HinP1I	GCGC	1 cut(s)	955
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	2 cut(s)	942, 974
HpaII	CCGG	2 cut(s)	96, 184
HphI	GGTGA	5 cut(s)	110, 182, 470, 764, 880
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	5 cut(s)	303, 330, 368, 473, 600
Hpy188III	TCNNGA	5 cut(s)	56, 110, 231, 275, 713
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	3 cut(s)	228, 449, 499
HpyCH4III	ACNGT	2 cut(s)	176, 746
HpyCH4IV	ACGT	3 cut(s)	6, 554, 908
HpyCH4V	TGCA	3 cut(s)	29, 563, 845
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	4 cut(s)	72, 276, 315, 599
HpySE526I	ACGT	3 cut(s)	6, 554, 908
Hsp92II	CATG	7 cut(s)	224, 311, 668, 710, 716, 853, 983
HspAI	GCGC	1 cut(s)	955
Kzo9I	GATC	4 cut(s)	217, 485, 584, 775
LmnI	GCTCC	3 cut(s)	37, 233, 938
Lsp1109I	GCAGC	2 cut(s)	13, 41
LweI	GCATC	2 cut(s)	280, 563
MaeI	CTAG	6 cut(s)	264, 525, 660, 672, 677, 684
MaeII	ACGT	3 cut(s)	6, 554, 908
MaeIII	GTNAC	4 cut(s)	170, 284, 639, 655
MalI	GATC	4 cut(s)	219, 487, 586, 777
MboI	GATC	4 cut(s)	217, 485, 584, 775
MboII	GAAGA	6 cut(s)	113, 343, 392, 473, 705, 866
MflI	RGATCY	1 cut(s)	485
MhlI	GDGCHC	1 cut(s)	935
MluCI	AATT	9 cut(s)	65, 137, 423, 466, 535, 727, 732, 804, 986
MlyI	GAGTC	1 cut(s)	936
MmeI	TCCRAC	1 cut(s)	284
MnlI	CCTC	8 cut(s)	10, 54, 63, 240, 340, 563, 620, 859
MroXI	GAANNNNTTC	1 cut(s)	105
MseI	TTAA	2 cut(s)	426, 860
MslI	CAYNNNNRTG	1 cut(s)	711
MspI	CCGG	2 cut(s)	96, 184
MspR9I	CCNGG	3 cut(s)	36, 185, 624
Mva1269I	GAATGC	1 cut(s)	630
MvaI	CCWGG	2 cut(s)	36, 624
MwoI	GCNNNNNNNGC	1 cut(s)	389
NciI	CCSGG	1 cut(s)	185
NdeII	GATC	4 cut(s)	217, 485, 584, 775
NlaIII	CATG	7 cut(s)	224, 311, 668, 710, 716, 853, 983
NlaIV	GGNNCC	7 cut(s)	42, 182, 229, 374, 391, 487, 934
NmuCI	GTSAC	1 cut(s)	170
PagI	TCATGA	1 cut(s)	712
PctI	GAATGC	1 cut(s)	630
PdmI	GAANNNNTTC	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	974
PkrI	GCNGC	2 cut(s)	28, 31
PleI	GAGTC	1 cut(s)	936
PpsI	GAGTC	1 cut(s)	936
PpuMI	RGGWCCY	1 cut(s)	41
Psp1406I	AACGTT	2 cut(s)	6, 554
Psp5II	RGGWCCY	1 cut(s)	41
Psp6I	CCWGG	2 cut(s)	34, 622
PspEI	GGTNACC	1 cut(s)	170
PspGI	CCWGG	2 cut(s)	34, 622
PspN4I	GGNNCC	7 cut(s)	42, 182, 229, 374, 391, 487, 934
PspPI	GGNCC	2 cut(s)	41, 181
PspPPI	RGGWCCY	1 cut(s)	41
PstI	CTGCAG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	485
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
RseI	CAYNNNNRTG	1 cut(s)	711
SaqAI	TTAA	2 cut(s)	426, 860
SatI	GCNGC	2 cut(s)	27, 30
Sau3AI	GATC	4 cut(s)	217, 485, 584, 775
Sau96I	GGNCC	2 cut(s)	41, 181
SchI	GAGTC	1 cut(s)	936
ScrFI	CCNGG	3 cut(s)	36, 185, 624
SduI	GDGCHC	1 cut(s)	935
SfaNI	GCATC	2 cut(s)	280, 563
SfcI	CTRYAG	3 cut(s)	27, 504, 916
SinI	GGWCC	1 cut(s)	41
SmiMI	CAYNNNNRTG	1 cut(s)	711
SpeI	ACTAGT	1 cut(s)	263
Sse9I	AATT	9 cut(s)	65, 137, 423, 466, 535, 727, 732, 804, 986
SsiI	CCGC	2 cut(s)	50, 963
SspI	AATATT	1 cut(s)	826
SspMI	CTAG	6 cut(s)	264, 525, 660, 672, 677, 684
StyD4I	CCNGG	3 cut(s)	34, 183, 622
StyI	CCWWGG	1 cut(s)	927
TaaI	ACNGT	2 cut(s)	176, 746
TaiI	ACGT	3 cut(s)	9, 557, 911
TaqI	TCGA	3 cut(s)	321, 691, 940
TasI	AATT	9 cut(s)	65, 137, 423, 466, 535, 727, 732, 804, 986
TfiI	GAWTC	1 cut(s)	974
Tru1I	TTAA	2 cut(s)	426, 860
Tru9I	TTAA	2 cut(s)	426, 860
TscAI	CASTG	1 cut(s)	751
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	2 cut(s)	26, 29
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	5 cut(s)	17, 324, 481, 492, 603
TspGWI	ACGGA	2 cut(s)	272, 582
TspRI	CASTG	1 cut(s)	751
VpaK11BI	GGWCC	1 cut(s)	41
XapI	RAATTY	4 cut(s)	65, 137, 466, 986
XcmI	CCANNNNNNNNNTGG	4 cut(s)	164, 238, 383, 789
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	6 cut(s)	264, 525, 660, 672, 677, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.