Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0029363

Physical Location & Seq

Genomic Coordinates Reverse (-)

56240998 .. 56248519

Gene Structure 7522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG412500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGAACGGTGCTGATGAGGTCGTCGCAGCAGCTCCGGGGGGCCCTCCACCGGCGCCTCTCGATTGGAAATTCTCTCAGGTCTTCGGCGAGCGTACCGCCGGTGAAGAAGTACAGGAAGTTGACATTATTTCTGCTATTGAATTCGATAAAACTGGTGACCATCTTGCTACTGGCGACAGAGGGGGCCGGGTGGTTCTTTTTGAGAGGACAGATACAAAAGATCATGGTGGCTCCTCCAGAAGGGATTTAGAAAGGATGGATTATTCAGTCAGTAGGCACCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGCCATGAGCCTGAGTTTGACTATCTGAAGAGTTTGGAAATAGAGGAGAAAATTAACAAAATCAGATGGTGCCAAACAGCAAATGGTGCCCTGTTTCTCCTATCTACTAATGACAAGACAATTAAATTTTGGAAGGTCCAAGAAAAGAAGGTCAAGAAAGTTTCTGAGATGAATGTGGATCCTTTGAAAACTGTAGCAAATGGCAGTGTTGCTAGTTCAAGCAGTTTGAGTAGTCCTAAAACGCATCTTGCAAATGGGGGATGCCAGTCTTTCAGTTCTCTTAGCAATGACATTTCATTTCCACCAGGGGGGATTCCTTCGCTGCGACTGCCACAGGTAGTAACTAGCCATGAGACTAGCCTGGTCGCTAGATGTCGAAGAGTATATGCTCATGCTCATGATTATCATATCAATTCAATTTCAAACAACAGTGATGGTGAAACTTTTATATCAGCTGATGATCTGCGAATAAATCTTTGGAACTTGGAAATTAGCAGTCAAAGTTTCAATATTGTTGATGTGAAGCCTACAAACATGGAAGATTTAACTGAGGTGATAACATCAGCAGAGTTCCACCCCACCCATTGCAATACGTTAGCCTATAGCAGTTCCAAAGGCTCAATTCGACTAATTGATTTGCGGCAGTCTGCTTTGTGTGATTCTCATGCTAAATTGTTTGAGGAACAGGAGGCACCTGGTGCTAGATCATTCTTCACAGAGATTATTGCTTCAATCTCAGATATTAAGTTTGCAAAGGATGGTAGATATATACTTAGCCGCGATTACATGACTCTTAAGGTTTGTCTCTTTTGTTTGCACTTTTACTTCATGTTGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000159 GO:0000278 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008287 GO:0009987 GO:0010921 GO:0016311 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0032502 GO:0032991 GO:0035303 GO:0035304 GO:0036211 GO:0043170 GO:0043412 GO:0043666 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0060255 GO:0065007 GO:0065009 GO:0070262 GO:0071704 GO:0080090 GO:0098772 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04151 ko04152 ko04261 ko04390 ko04391 ko04530 ko04728 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04151 map04152 map04261 map04390 map04391 map04530 map04728 map05142 map05160 map05165

Pfam Domains

Protein Families

WD40

Protein Analysis

382

Amino Acids

42.67

Weight (kDa)

5.74

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029363)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g11250
rosa_samantha	Rh2CG412500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	5 cut(s)	52, 276, 378, 395, 1000
AccII	CGCG	1 cut(s)	1089
AciI	CCGC	3 cut(s)	96, 949, 1087
AclWI	GGATC	2 cut(s)	482, 495
AcsI	RAATTY	3 cut(s)	68, 140, 434
AcuI	CTGAAG	1 cut(s)	356
AcyI	GRCGYC	1 cut(s)	53
AdeI	CACNNNGTG	1 cut(s)	1007
AfaI	GTAC	2 cut(s)	94, 111
AfiI	CCNNNNNNNGG	3 cut(s)	49, 240, 617
AflII	CTTAAG	1 cut(s)	1103
AgsI	TTSAA	7 cut(s)	140, 496, 528, 726, 732, 817, 1041
AjnI	CCWGG	3 cut(s)	613, 669, 1003
AjuI	GAANNNNNNNTTGG	2 cut(s)	769, 801
AluBI	AGCT	2 cut(s)	32, 764
AluI	AGCT	2 cut(s)	32, 764
Alw26I	GTCTC	2 cut(s)	656, 1118
AlwI	GGATC	2 cut(s)	482, 495
AoxI	GGCC	2 cut(s)	40, 184
ApaI	GGGCCC	1 cut(s)	44
ApeKI	GCWGC	3 cut(s)	26, 29, 631
ApoI	RAATTY	3 cut(s)	68, 140, 434
AspLEI	GCGC	1 cut(s)	55
AspS9I	GGNCC	4 cut(s)	40, 41, 184, 445
AsuC2I	CCSGG	2 cut(s)	36, 188
AsuHPI	GGTGA	4 cut(s)	113, 167, 758, 874
AvaII	GGWCC	1 cut(s)	445
BaeGI	GKGCMC	2 cut(s)	44, 400
BamHI	GGATCC	1 cut(s)	487
BanI	GGYRCC	5 cut(s)	52, 276, 378, 395, 1000
BanII	GRGCYC	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	73
BbvI	GCAGC	3 cut(s)	38, 41, 618
BccI	CCATC	5 cut(s)	168, 250, 369, 737, 1061
BciT130I	CCWGG	3 cut(s)	615, 671, 1005
BcnI	CCSGG	2 cut(s)	36, 188
BcoDI	GTCTC	2 cut(s)	656, 1118
BfaI	CTAG	5 cut(s)	522, 654, 666, 678, 1011
BfmI	CTRYAG	2 cut(s)	501, 910
BfoI	RGCGCY	1 cut(s)	56
BfrI	CTTAAG	1 cut(s)	1103
BisI	GCNGC	5 cut(s)	27, 30, 632, 950, 1087
BlsI	GCNGC	5 cut(s)	28, 31, 633, 951, 1088
Bme1390I	CCNGG	5 cut(s)	36, 188, 615, 671, 1005
Bme18I	GGWCC	1 cut(s)	445
BmgT120I	GGNCC	4 cut(s)	40, 41, 184, 445
BmrFI	CCNGG	5 cut(s)	36, 188, 615, 671, 1005
BmsI	GCATC	2 cut(s)	560, 562
BpiI	GAAGAC	1 cut(s)	73
BpmI	CTGGAG	1 cut(s)	220
BpuMI	CCSGG	2 cut(s)	36, 188
BsaHI	GRCGYC	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	35, 614
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 240, 617
Bse118I	RCCGGY	2 cut(s)	49, 98
Bse1I	ACTGG	3 cut(s)	157, 175, 574
Bse3DI	GCAATG	2 cut(s)	601, 892
BseBI	CCWGG	3 cut(s)	615, 671, 1005
BseDI	CCNNGG	2 cut(s)	35, 614
BseGI	GGATG	3 cut(s)	261, 575, 1072
BseLI	CCNNNNNNNGG	3 cut(s)	49, 240, 617
BseMI	GCAATG	2 cut(s)	601, 892
BseMII	CTCAG	6 cut(s)	89, 273, 312, 465, 849, 1059
BseNI	ACTGG	3 cut(s)	157, 175, 574
BseRI	GAGGAG	2 cut(s)	223, 368
BseSI	GKGCMC	2 cut(s)	44, 400
BseXI	GCAGC	3 cut(s)	38, 41, 618
Bsh1236I	CGCG	1 cut(s)	1089
BshFI	GGCC	2 cut(s)	42, 186
BshNI	GGYRCC	5 cut(s)	52, 276, 378, 395, 1000
BsiSI	CCGG	4 cut(s)	35, 50, 99, 187
BslI	CCNNNNNNNGG	3 cut(s)	49, 240, 617
BsmAI	GTCTC	2 cut(s)	656, 1118
BsnI	GGCC	2 cut(s)	42, 186
Bsp120I	GGGCCC	1 cut(s)	40
Bsp1286I	GDGCHC	2 cut(s)	44, 400
Bsp143I	GATC	4 cut(s)	220, 487, 769, 1013
BspACI	CCGC	3 cut(s)	96, 949, 1087
BspANI	GGCC	2 cut(s)	42, 186
BspCNI	CTCAG	6 cut(s)	88, 274, 313, 466, 850, 1058
BspFNI	CGCG	1 cut(s)	1089
BspHI	TCATGA	1 cut(s)	706
BspPI	GGATC	2 cut(s)	482, 495
BspT107I	GGYRCC	5 cut(s)	52, 276, 378, 395, 1000
BspTI	CTTAAG	1 cut(s)	1103
BsrDI	GCAATG	2 cut(s)	601, 892
BsrFI	RCCGGY	2 cut(s)	49, 98
BsrI	ACTGG	3 cut(s)	157, 175, 574
BssAI	RCCGGY	2 cut(s)	49, 98
BssECI	CCNNGG	2 cut(s)	35, 614
BssMI	GATC	4 cut(s)	220, 487, 769, 1013
BssNI	GRCGYC	1 cut(s)	53
Bst2UI	CCWGG	3 cut(s)	615, 671, 1005
Bst4CI	ACNGT	3 cut(s)	8, 502, 740
Bst6I	CTCTTC	2 cut(s)	332, 682
BstACI	GRCGYC	1 cut(s)	53
BstAFI	CTTAAG	1 cut(s)	1103
BstAPI	GCANNNNNTGC	2 cut(s)	395, 1007
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	8 cut(s)	75, 282, 321, 474, 590, 858, 1045, 1082
BstEII	GGTNACC	1 cut(s)	155
BstENI	CCTNNNNNAGG	1 cut(s)	238
BstF5I	GGATG	3 cut(s)	261, 575, 1072
BstFNI	CGCG	1 cut(s)	1089
BstH2I	RGCGCY	1 cut(s)	56
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	4 cut(s)	223, 490, 772, 1016
BstMAI	GTCTC	2 cut(s)	656, 1118
BstMBI	GATC	4 cut(s)	220, 487, 769, 1013
BstMWI	GCNNNNNNNGC	3 cut(s)	395, 637, 1007
BstNI	CCWGG	3 cut(s)	615, 671, 1005
BstPI	GGTNACC	1 cut(s)	155
BstSCI	CCNGG	5 cut(s)	34, 186, 613, 669, 1003
BstSFI	CTRYAG	2 cut(s)	501, 910
BstSLI	GKGCMC	2 cut(s)	44, 400
BstUI	CGCG	1 cut(s)	1089
BstV1I	GCAGC	3 cut(s)	38, 41, 618
BstV2I	GAAGAC	1 cut(s)	73
BstX2I	RGATCY	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	487
BsuRI	GGCC	2 cut(s)	42, 186
BtsCI	GGATG	3 cut(s)	261, 575, 1072
BtsI	GCAGTG	1 cut(s)	520
BtsIMutI	CAGTG	2 cut(s)	520, 745
Cac8I	GCNNGC	1 cut(s)	89
CciI	TCATGA	1 cut(s)	706
CfoI	GCGC	1 cut(s)	55
Cfr10I	RCCGGY	2 cut(s)	49, 98
Cfr13I	GGNCC	4 cut(s)	40, 41, 184, 445
CsiI	ACCWGGT	1 cut(s)	1003
Csp6I	GTAC	2 cut(s)	93, 110
CviAII	CATG	9 cut(s)	224, 314, 659, 701, 707, 844, 974, 1096, 1138
CviQI	GTAC	2 cut(s)	93, 110
DdeI	CTNAG	8 cut(s)	75, 282, 321, 474, 590, 858, 1045, 1082
DinI	GGCGCC	1 cut(s)	54
DpnI	GATC	4 cut(s)	222, 489, 771, 1015
DpnII	GATC	4 cut(s)	220, 487, 769, 1013
DraIII	CACNNNGTG	1 cut(s)	1007
Eam1104I	CTCTTC	2 cut(s)	332, 682
EarI	CTCTTC	2 cut(s)	332, 682
Eco24I	GRGCYC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	445
Eco57I	CTGAAG	1 cut(s)	356
Eco91I	GGTNACC	1 cut(s)	155
EcoNI	CCTNNNNNAGG	1 cut(s)	238
EcoO109I	RGGNCCY	2 cut(s)	40, 41
EcoO65I	GGTNACC	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	140
EcoRII	CCWGG	3 cut(s)	613, 669, 1003
EcoT38I	GRGCYC	1 cut(s)	44
EgeI	GGCGCC	1 cut(s)	54
EheI	GGCGCC	1 cut(s)	54
FaeI	CATG	9 cut(s)	227, 317, 662, 704, 710, 847, 977, 1099, 1141
FatI	CATG	9 cut(s)	223, 313, 658, 700, 706, 843, 973, 1095, 1137
Fnu4HI	GCNGC	5 cut(s)	27, 30, 632, 950, 1087
FokI	GGATG	3 cut(s)	268, 582, 1079
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	5 cut(s)	27, 30, 632, 950, 1087
FspBI	CTAG	5 cut(s)	522, 654, 666, 678, 1011
GlaI	GCGC	1 cut(s)	54
GluI	GCNGC	5 cut(s)	27, 30, 632, 950, 1087
GsuI	CTGGAG	1 cut(s)	220
HaeII	RGCGCY	1 cut(s)	56
HaeIII	GGCC	2 cut(s)	42, 186
HapII	CCGG	4 cut(s)	35, 50, 99, 187
HhaI	GCGC	1 cut(s)	55
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	9 cut(s)	227, 317, 662, 704, 710, 847, 977, 1099, 1141
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	3 cut(s)	622, 968, 1099
HpaII	CCGG	4 cut(s)	35, 50, 99, 187
HphI	GGTGA	4 cut(s)	113, 167, 758, 874
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	5 cut(s)	309, 336, 374, 475, 1048
Hpy188III	TCNNGA	4 cut(s)	59, 237, 463, 707
Hpy8I	GTNNAC	1 cut(s)	121
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	4 cut(s)	234, 436, 451, 636
HpyCH4III	ACNGT	3 cut(s)	8, 502, 740
HpyCH4IV	ACGT	1 cut(s)	902
HpyCH4V	TGCA	4 cut(s)	560, 897, 1061, 1126
HpyF10VI	GCNNNNNNNGC	3 cut(s)	395, 637, 1007
HpyF3I	CTNAG	8 cut(s)	75, 282, 321, 474, 590, 858, 1045, 1082
HpySE526I	ACGT	1 cut(s)	902
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	9 cut(s)	227, 317, 662, 704, 710, 847, 977, 1099, 1141
HspAI	GCGC	1 cut(s)	53
KasI	GGCGCC	1 cut(s)	52
Kzo9I	GATC	4 cut(s)	220, 487, 769, 1013
LmnI	GCTCC	2 cut(s)	37, 236
Lsp1109I	GCAGC	3 cut(s)	38, 41, 618
LweI	GCATC	2 cut(s)	560, 562
MabI	ACCWGGT	1 cut(s)	1003
MaeI	CTAG	5 cut(s)	522, 654, 666, 678, 1011
MaeII	ACGT	1 cut(s)	902
MaeIII	GTNAC	3 cut(s)	155, 290, 649
MalI	GATC	4 cut(s)	222, 489, 771, 1015
MboI	GATC	4 cut(s)	220, 487, 769, 1013
MboII	GAAGA	6 cut(s)	73, 116, 349, 699, 860, 1012
MflI	RGATCY	1 cut(s)	487
MhlI	GDGCHC	2 cut(s)	44, 400
Mly113I	GGCGCC	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	1093
MseI	TTAA	5 cut(s)	363, 432, 854, 1053, 1104
MslI	CAYNNNNRTG	1 cut(s)	705
MspA1I	CMGCKG	1 cut(s)	764
MspCI	CTTAAG	1 cut(s)	1103
MspI	CCGG	4 cut(s)	35, 50, 99, 187
MspR9I	CCNGG	5 cut(s)	36, 188, 615, 671, 1005
MvaI	CCWGG	3 cut(s)	615, 671, 1005
MvnI	CGCG	1 cut(s)	1089
MwoI	GCNNNNNNNGC	3 cut(s)	395, 637, 1007
NarI	GGCGCC	1 cut(s)	53
NciI	CCSGG	2 cut(s)	36, 188
NdeII	GATC	4 cut(s)	220, 487, 769, 1013
NlaIII	CATG	9 cut(s)	227, 317, 662, 704, 710, 847, 977, 1099, 1141
NmuCI	GTSAC	1 cut(s)	155
PagI	TCATGA	1 cut(s)	706
PfeI	GAWTC	2 cut(s)	622, 968
PkrI	GCNGC	5 cut(s)	28, 31, 633, 951, 1088
PleI	GAGTC	1 cut(s)	1093
PluTI	GGCGCC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	1093
Psp6I	CCWGG	3 cut(s)	613, 669, 1003
PspEI	GGTNACC	1 cut(s)	155
PspGI	CCWGG	3 cut(s)	613, 669, 1003
PspOMI	GGGCCC	1 cut(s)	40
PspPI	GGNCC	4 cut(s)	40, 41, 184, 445
PsuI	RGATCY	1 cut(s)	487
PvuII	CAGCTG	1 cut(s)	764
RsaI	GTAC	2 cut(s)	94, 111
RsaNI	GTAC	2 cut(s)	93, 110
RseI	CAYNNNNRTG	1 cut(s)	705
SaqAI	TTAA	5 cut(s)	363, 432, 854, 1053, 1104
SatI	GCNGC	5 cut(s)	27, 30, 632, 950, 1087
Sau3AI	GATC	4 cut(s)	220, 487, 769, 1013
Sau96I	GGNCC	4 cut(s)	40, 41, 184, 445
SchI	GAGTC	1 cut(s)	1093
ScrFI	CCNGG	5 cut(s)	36, 188, 615, 671, 1005
SduI	GDGCHC	2 cut(s)	44, 400
SexAI	ACCWGGT	1 cut(s)	1003
SfaNI	GCATC	2 cut(s)	560, 562
SfcI	CTRYAG	2 cut(s)	501, 910
SfoI	GGCGCC	1 cut(s)	54
SgrAI	CRCCGGYG	2 cut(s)	49, 98
SinI	GGWCC	1 cut(s)	445
SmiMI	CAYNNNNRTG	1 cut(s)	705
SmlI	CTYRAG	1 cut(s)	1103
SmoI	CTYRAG	1 cut(s)	1103
SsiI	CCGC	3 cut(s)	96, 949, 1087
SspDI	GGCGCC	1 cut(s)	52
SspI	AATATT	1 cut(s)	820
SspMI	CTAG	5 cut(s)	522, 654, 666, 678, 1011
StyD4I	CCNGG	5 cut(s)	34, 186, 613, 669, 1003
TaaI	ACNGT	3 cut(s)	8, 502, 740
TaiI	ACGT	1 cut(s)	905
TaqI	TCGA	4 cut(s)	60, 144, 685, 934
TatI	WGTACW	1 cut(s)	109
TauI	GCSGC	2 cut(s)	952, 1089
TfiI	GAWTC	2 cut(s)	622, 968
Tru1I	TTAA	5 cut(s)	363, 432, 854, 1053, 1104
Tru9I	TTAA	5 cut(s)	363, 432, 854, 1053, 1104
TscAI	CASTG	2 cut(s)	520, 745
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	3 cut(s)	26, 29, 631
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	4 cut(s)	17, 494, 594, 1126
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	2 cut(s)	520, 745
Vha464I	CTTAAG	1 cut(s)	1103
VpaK11BI	GGWCC	1 cut(s)	445
XagI	CCTNNNNNAGG	1 cut(s)	238
XapI	RAATTY	3 cut(s)	68, 140, 434
XcmI	CCANNNNNNNNNTGG	2 cut(s)	167, 389
XspI	CTAG	5 cut(s)	522, 654, 666, 678, 1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.