Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0029364

Physical Location & Seq

Genomic Coordinates Reverse (-)

10239476 .. 10241602

Gene Structure 2127 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGCTTCATACAGGCCATTCCCGCCCCAATCGTCATTTGCGCCAGCACCGAATCAAAACCCTCTACCGCCAGCACCACCGCCACCGCAACAGCGAGGCAGTCAGTATAACCAGAATTGGGGGTATAATGCTAGTAGTGGTGGTTCTAGTGGCGGCGATGGGGCTGTGCCGGCGGCTCCTTCTTCGTATCCGCCAAATTACAATTACCAACATAGTAGTTATGGCCCTCCAAGAACTCAACACCCTCATCCACCACCACAATACAACTACCAACCACCGCCTCCGCCACCACCCGAGCCTTCATACCCACAGCCACCGCCCCCTCAAGCTCCTCCAGCAGCACAAAATAAAATGCCCTTACAGCCTCCACAAGCCCCTATATATTACCAGAATTCTCAGTTTTCACAGTATAGTCACCAGCCAATCCAGCCTTCGCAGCAGCCACCGCCTCCTCCCCCACCACCTTTGTCCCCCAATTCCTCGGTGCCACCACCACCTCCTCCCCCCGGTTCGCCTCCACCACCGCCTCCTCAAAGTAAGGACAGCGGGGTAGATAGGAGATCCCATGACAAAGGGGCTTCTAGGGAGGCATCAGTGTCCAGAAGGCGTGAACATGGGCATTTGAATCATGGGGTTCCTCCAAAACAGCAGAAGCCCCCAGTTCCTTCAGTGCCAGTGAAGAAAGCAAATGGGCCGCCAGGGAGAGTGGAAACAGAGGAAGAGAGGAGATTAAGGAAGAAGAGGGAGTTTGAAAAGCAAAGGCAAGAAGAGAAGCATAGGCAGCAGCTGAAGGATTCCCAAAACTCAGTTTTGCAGAAGACGCAAATGTTGTCTTCTGGCAAGGGACATGGATCCATTGTGGGGTCGCGAATGGGTGAAAGGAGAGCTACTCCATTCTTGAGTGGTGAGAGGACTGAAAATAGGCTAAAGAAGCCAACAACTTTCGTGTGCAAGTTGAAATTCCGGAATGAACTTCCAGATCCTAGTGCACAGCCAAAGCTTATGTCTTTGAAGAAAGAGAAAGATCAATATACAAAATACACAATAACGTCATTGGAGAAAACATACAAGCCCAAGCTTTTTGTTGAACCATCGATCTTGGGATTCCTCTTGACCTACTCGACCTCAGTGTATATAATCCTCCTCCTCCAAGTGTTAGACTACCACTCGCTGTGGAAGATGAGGAATTATTGCAGGATGATGTTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009909 GO:0009910 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0019538 GO:0030880 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051276 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

Paf1

Protein Analysis

404

Amino Acids

45.06

Weight (kDa)

9.94

Isoelectric Point (pI)

82.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Paf1	PF03985	315 - 363	3.2e-09	Paf1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029364)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g11980
rosa_multiflora	Rmu_co8481561.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	484
AccII	CGCG	1 cut(s)	868
AccIII	TCCGGA	1 cut(s)	963
AclWI	GGATC	4 cut(s)	555, 846, 859, 974
AcsI	RAATTY	2 cut(s)	391, 959
AcuI	CTGAAG	2 cut(s)	651, 809
AfiI	CCNNNNNNNGG	3 cut(s)	118, 506, 861
AgsI	TTSAA	5 cut(s)	625, 752, 958, 1012, 1088
AjnI	CCWGG	1 cut(s)	697
AjuI	GAANNNNNNNTTGG	2 cut(s)	415, 447
AluBI	AGCT	5 cut(s)	329, 787, 887, 1000, 1078
AluI	AGCT	5 cut(s)	329, 787, 887, 1000, 1078
Alw21I	GWGCWC	1 cut(s)	991
Alw44I	GTGCAC	1 cut(s)	987
AlwI	GGATC	4 cut(s)	555, 846, 859, 974
AlwNI	CAGNNNCTG	1 cut(s)	787
Ama87I	CYCGRG	1 cut(s)	293
Aor13HI	TCCGGA	1 cut(s)	963
AoxI	GGCC	3 cut(s)	14, 223, 692
ApaLI	GTGCAC	1 cut(s)	987
ApeKI	GCWGC	5 cut(s)	338, 436, 439, 781, 784
ApoI	RAATTY	2 cut(s)	391, 959
ArsI	GACNNNNNNTTYG	2 cut(s)	989, 1021
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	2 cut(s)	224, 692
AsuC2I	CCSGG	1 cut(s)	507
AsuHPI	GGTGA	3 cut(s)	407, 887, 917
AvaI	CYCGRG	1 cut(s)	293
BaeGI	GKGCMC	1 cut(s)	991
BamHI	GGATCC	1 cut(s)	851
BanI	GGYRCC	1 cut(s)	484
BbsI	GAAGAC	2 cut(s)	824, 825
Bbv12I	GWGCWC	1 cut(s)	991
BbvI	GCAGC	5 cut(s)	350, 448, 451, 793, 796
BccI	CCATC	2 cut(s)	152, 1099
BciT130I	CCWGG	1 cut(s)	699
BciVI	GTATCC	1 cut(s)	198
BcnI	CCSGG	1 cut(s)	507
BfaI	CTAG	4 cut(s)	132, 147, 582, 984
BfuI	GTATCC	1 cut(s)	198
BisI	GCNGC	8 cut(s)	154, 174, 339, 437, 440, 695, 782, 785
BlsI	GCNGC	8 cut(s)	155, 175, 340, 438, 441, 696, 783, 786
Bme1390I	CCNGG	2 cut(s)	507, 699
BmeT110I	CYCGRG	1 cut(s)	293
BmgT120I	GGNCC	2 cut(s)	224, 692
BmiI	GGNNCC	4 cut(s)	177, 486, 636, 853
BmrFI	CCNGG	2 cut(s)	507, 699
BmrI	ACTGGG	1 cut(s)	653
BmsI	GCATC	1 cut(s)	599
BmuI	ACTGGG	1 cut(s)	653
BpiI	GAAGAC	2 cut(s)	824, 825
BplI	GAGNNNNNCTC	2 cut(s)	874, 906
BpmI	CTGGAG	1 cut(s)	318
BpuEI	CTTGAG	2 cut(s)	309, 919
BpuMI	CCSGG	1 cut(s)	507
Bsa29I	ATCGAT	1 cut(s)	1094
BsaJI	CCNNGG	3 cut(s)	480, 505, 698
BsaWI	WCCGGW	1 cut(s)	963
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 506, 861
Bse118I	RCCGGY	1 cut(s)	169
Bse1I	ACTGG	2 cut(s)	659, 674
BseAI	TCCGGA	1 cut(s)	963
BseBI	CCWGG	1 cut(s)	699
BseCI	ATCGAT	1 cut(s)	1094
BseDI	CCNNGG	3 cut(s)	480, 505, 698
BseGI	GGATG	2 cut(s)	247, 1203
BseLI	CCNNNNNNNGG	3 cut(s)	118, 506, 861
BseMII	CTCAG	3 cut(s)	410, 819, 1140
BseNI	ACTGG	2 cut(s)	659, 674
BseRI	GAGGAG	7 cut(s)	321, 441, 489, 519, 739, 1133, 1136
BseSI	GKGCMC	1 cut(s)	991
BseXI	GCAGC	5 cut(s)	350, 448, 451, 793, 796
Bsh1236I	CGCG	1 cut(s)	868
BshFI	GGCC	3 cut(s)	16, 225, 694
BshNI	GGYRCC	1 cut(s)	484
BshVI	ATCGAT	1 cut(s)	1094
BsiHKAI	GWGCWC	1 cut(s)	991
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	3 cut(s)	170, 507, 964
BslFI	GGGAC	2 cut(s)	454, 858
BslI	CCNNNNNNNGG	3 cut(s)	118, 506, 861
BsmFI	GGGAC	2 cut(s)	454, 858
BsnI	GGCC	3 cut(s)	16, 225, 694
BsoBI	CYCGRG	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	991
Bsp13I	TCCGGA	1 cut(s)	963
Bsp143I	GATC	5 cut(s)	560, 851, 979, 1024, 1095
Bsp68I	TCGCGA	1 cut(s)	868
BspANI	GGCC	3 cut(s)	16, 225, 694
BspCNI	CTCAG	3 cut(s)	409, 818, 1139
BspDI	ATCGAT	1 cut(s)	1094
BspEI	TCCGGA	1 cut(s)	963
BspFNI	CGCG	1 cut(s)	868
BspLI	GGNNCC	4 cut(s)	177, 486, 636, 853
BspPI	GGATC	4 cut(s)	555, 846, 859, 974
BspT107I	GGYRCC	1 cut(s)	484
BsrFI	RCCGGY	1 cut(s)	169
BsrI	ACTGG	2 cut(s)	659, 674
BssAI	RCCGGY	1 cut(s)	169
BssECI	CCNNGG	3 cut(s)	480, 505, 698
BssMI	GATC	5 cut(s)	560, 851, 979, 1024, 1095
Bst2UI	CCWGG	1 cut(s)	699
Bst4CI	ACNGT	1 cut(s)	408
Bst6I	CTCTTC	3 cut(s)	714, 734, 762
BstC8I	GCNNGC	3 cut(s)	45, 72, 171
BstDEI	CTNAG	3 cut(s)	396, 805, 1126
BstF5I	GGATG	2 cut(s)	247, 1203
BstFNI	CGCG	1 cut(s)	868
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	5 cut(s)	563, 854, 982, 1027, 1098
BstMBI	GATC	5 cut(s)	560, 851, 979, 1024, 1095
BstNI	CCWGG	1 cut(s)	699
BstSCI	CCNGG	2 cut(s)	505, 697
BstSLI	GKGCMC	1 cut(s)	991
BstUI	CGCG	1 cut(s)	868
BstV1I	GCAGC	5 cut(s)	350, 448, 451, 793, 796
BstV2I	GAAGAC	2 cut(s)	824, 825
BstX2I	RGATCY	3 cut(s)	560, 851, 979
BstYI	RGATCY	3 cut(s)	560, 851, 979
Bsu15I	ATCGAT	1 cut(s)	1094
BsuI	GTATCC	1 cut(s)	198
BsuRI	GGCC	3 cut(s)	16, 225, 694
BsuTUI	ATCGAT	1 cut(s)	1094
BtgZI	GCGATG	1 cut(s)	171
BtsCI	GGATG	2 cut(s)	247, 1203
BtsIMutI	CAGTG	4 cut(s)	600, 675, 681, 1134
BtuMI	TCGCGA	1 cut(s)	868
Cac8I	GCNNGC	3 cut(s)	45, 72, 171
CaiI	CAGNNNCTG	1 cut(s)	787
CfoI	GCGC	1 cut(s)	43
Cfr10I	RCCGGY	1 cut(s)	169
Cfr13I	GGNCC	2 cut(s)	224, 692
ClaI	ATCGAT	1 cut(s)	1094
CseI	GACGC	1 cut(s)	829
CspCI	CAANNNNNGTGG	2 cut(s)	447, 482
CviAII	CATG	4 cut(s)	566, 614, 629, 848
DdeI	CTNAG	3 cut(s)	396, 805, 1126
DpnI	GATC	5 cut(s)	562, 853, 981, 1026, 1097
DpnII	GATC	5 cut(s)	560, 851, 979, 1024, 1095
Eam1104I	CTCTTC	3 cut(s)	714, 734, 762
EarI	CTCTTC	3 cut(s)	714, 734, 762
EciI	GGCGGA	2 cut(s)	180, 273
Eco57I	CTGAAG	2 cut(s)	651, 809
Eco88I	CYCGRG	1 cut(s)	293
EcoRI	GAATTC	1 cut(s)	391
EcoRII	CCWGG	1 cut(s)	697
FaeI	CATG	4 cut(s)	569, 617, 632, 851
FaqI	GGGAC	2 cut(s)	454, 858
FatI	CATG	4 cut(s)	565, 613, 628, 847
FauI	CCCGC	2 cut(s)	30, 539
Fnu4HI	GCNGC	8 cut(s)	154, 174, 339, 437, 440, 695, 782, 785
FokI	GGATG	1 cut(s)	234
Fsp4HI	GCNGC	8 cut(s)	154, 174, 339, 437, 440, 695, 782, 785
FspBI	CTAG	4 cut(s)	132, 147, 582, 984
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	8 cut(s)	154, 174, 339, 437, 440, 695, 782, 785
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	3 cut(s)	16, 225, 694
HapII	CCGG	3 cut(s)	170, 507, 964
HgaI	GACGC	1 cut(s)	829
HhaI	GCGC	1 cut(s)	43
Hin1II	CATG	4 cut(s)	569, 617, 632, 851
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HindIII	AAGCTT	2 cut(s)	998, 1076
HinfI	GANTC	4 cut(s)	52, 625, 794, 1104
HpaII	CCGG	3 cut(s)	170, 507, 964
HphI	GGTGA	3 cut(s)	407, 887, 917
Hpy166II	GTNNAC	2 cut(s)	611, 989
Hpy188III	TCNNGA	6 cut(s)	600, 867, 898, 964, 977, 1111
Hpy8I	GTNNAC	2 cut(s)	611, 989
HpyAV	CCTTC	6 cut(s)	189, 309, 441, 597, 675, 784
HpyCH4III	ACNGT	1 cut(s)	408
HpyCH4IV	ACGT	1 cut(s)	1049
HpyCH4V	TGCA	5 cut(s)	814, 951, 989, 1194, 1207
HpyF3I	CTNAG	3 cut(s)	396, 805, 1126
HpySE526I	ACGT	1 cut(s)	1049
Hsp92II	CATG	4 cut(s)	569, 617, 632, 851
HspAI	GCGC	1 cut(s)	41
Kpn2I	TCCGGA	1 cut(s)	963
KroI	GCCGGC	1 cut(s)	169
KroNI	GCCGGC	1 cut(s)	171
Kzo9I	GATC	5 cut(s)	560, 851, 979, 1024, 1095
LmnI	GCTCC	2 cut(s)	181, 334
Lsp1109I	GCAGC	5 cut(s)	350, 448, 451, 793, 796
LweI	GCATC	1 cut(s)	599
MaeI	CTAG	4 cut(s)	132, 147, 582, 984
MaeII	ACGT	1 cut(s)	1049
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	5 cut(s)	562, 853, 981, 1026, 1097
MboI	GATC	5 cut(s)	560, 851, 979, 1024, 1095
MflI	RGATCY	3 cut(s)	560, 851, 979
MhlI	GDGCHC	1 cut(s)	991
MluCI	AATT	7 cut(s)	115, 196, 202, 391, 475, 959, 1186
MroI	TCCGGA	1 cut(s)	963
MroNI	GCCGGC	1 cut(s)	169
MseI	TTAA	1 cut(s)	731
MspA1I	CMGCKG	2 cut(s)	546, 787
MspI	CCGG	3 cut(s)	170, 507, 964
MspR9I	CCNGG	2 cut(s)	507, 699
MvaI	CCWGG	1 cut(s)	699
MvnI	CGCG	1 cut(s)	868
NaeI	GCCGGC	1 cut(s)	171
NciI	CCSGG	1 cut(s)	507
NdeII	GATC	5 cut(s)	560, 851, 979, 1024, 1095
NgoMIV	GCCGGC	1 cut(s)	169
NlaIII	CATG	4 cut(s)	569, 617, 632, 851
NlaIV	GGNNCC	4 cut(s)	177, 486, 636, 853
NmuCI	GTSAC	1 cut(s)	413
NruI	TCGCGA	1 cut(s)	868
PdiI	GCCGGC	1 cut(s)	171
PfeI	GAWTC	4 cut(s)	52, 625, 794, 1104
PkrI	GCNGC	8 cut(s)	155, 175, 340, 438, 441, 696, 783, 786
Psp6I	CCWGG	1 cut(s)	697
PspGI	CCWGG	1 cut(s)	697
PspN4I	GGNNCC	4 cut(s)	177, 486, 636, 853
PspPI	GGNCC	2 cut(s)	224, 692
PsrI	GAACNNNNNNTAC	2 cut(s)	127, 159
PstNI	CAGNNNCTG	1 cut(s)	787
PsuI	RGATCY	3 cut(s)	560, 851, 979
PvuII	CAGCTG	1 cut(s)	787
RruI	TCGCGA	1 cut(s)	868
SaqAI	TTAA	1 cut(s)	731
SatI	GCNGC	8 cut(s)	154, 174, 339, 437, 440, 695, 782, 785
Sau3AI	GATC	5 cut(s)	560, 851, 979, 1024, 1095
Sau96I	GGNCC	2 cut(s)	224, 692
ScrFI	CCNGG	2 cut(s)	507, 699
SduI	GDGCHC	1 cut(s)	991
SfaNI	GCATC	1 cut(s)	599
SmlI	CTYRAG	2 cut(s)	324, 898
SmoI	CTYRAG	2 cut(s)	324, 898
Sse9I	AATT	7 cut(s)	115, 196, 202, 391, 475, 959, 1186
SspMI	CTAG	4 cut(s)	132, 147, 582, 984
StyD4I	CCNGG	2 cut(s)	505, 697
TaaI	ACNGT	1 cut(s)	408
TaiI	ACGT	1 cut(s)	1052
TaqI	TCGA	2 cut(s)	1094, 1121
TasI	AATT	7 cut(s)	115, 196, 202, 391, 475, 959, 1186
TauI	GCSGC	3 cut(s)	156, 176, 697
TfiI	GAWTC	4 cut(s)	52, 625, 794, 1104
Tru1I	TTAA	1 cut(s)	731
Tru9I	TTAA	1 cut(s)	731
TscAI	CASTG	4 cut(s)	600, 675, 681, 1134
TseFI	GTSAC	1 cut(s)	413
TseI	GCWGC	5 cut(s)	338, 436, 439, 781, 784
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	2 cut(s)	291, 984
TspRI	CASTG	4 cut(s)	600, 675, 681, 1134
VneI	GTGCAC	1 cut(s)	987
XapI	RAATTY	2 cut(s)	391, 959
XspI	CTAG	4 cut(s)	132, 147, 582, 984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.