Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8481561.1

Orthogroup ID

OG0029364

Physical Location & Seq

Genomic Coordinates Forward (+)

65 .. 2007

Gene Structure 1943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8481561.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

atggcttcttaccggccattcccgcctcaaccggcgtttccgccaccgccgccgaatcaaaaccccatagcgccgccgccacgtggcaatcagtataaccagaattggggttataatgccggtggcggcggcggcgatggggctgtgccggctgctccttcttcatacccccaaaactacattcaccaccctcatagtaattatggtcctcctagagctcagcatcctcacccaccaccgcaatactcgtacccgccgccaccgcctcctccgccggactcttcatacccacctccaccgcctcctcaagctcctcccgggaaaaatatgcccctacagcctccacaagccccaatgtactaccagtctaactctcaatatgctcagtatagtcaccaggcaatgcagccaccgccgcctctgccgccgcctttgtctcctagttcgtctattccaccgccacccccgcctccaaattctccaccacctcccccgccgccgcagagtagggagagggagagtggtttcgataaggggccagactacaaaggggcttccaaggatgtgggagcttctgctgccaagcgggaacatgggcattcgaaccatcatgggattccccataaacacaagccccctgttccgttggtgccggtgaagaagtctaatgggccgccggggagagtggagacggaggaagagaggaggttgaggaagaagagggagtttgagaagcaaagacaagaggagaagcataggcagcagctgaaggagtcccaaaattcagttttgcagaagacacatatgttgtcgtctgggaagggacatggatcgattgcagggtcacgaatgggggaaaggagggccactccattcttgagtggtgagagggctgaaaataggctaaagaagccaacaacatttgtgtgtaagttgaaattccggaacgaacttccagatccaagtgcacaacccaagctcatgtccatgaagaaagacaaagatcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009909 GO:0009910 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0019538 GO:0030880 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051276 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

Paf1

Protein Analysis

336

Amino Acids

36.97

Weight (kDa)

9.91

Isoelectric Point (pI)

76.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029364)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g11980
rosa_multiflora	Rmu_co8481561.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	114
AccB1I	GGYRCC	1 cut(s)	649
AccIII	TCCGGA	1 cut(s)	942
AclWI	GGATC	2 cut(s)	838, 953
AcoI	YGGCCR	1 cut(s)	14
AcsI	RAATTY	3 cut(s)	475, 781, 938
AcuI	CTGAAG	1 cut(s)	788
AcvI	CACGTG	1 cut(s)	83
AfaI	GTAC	2 cut(s)	251, 359
AfiI	CCNNNNNNNGG	2 cut(s)	83, 106
AgsI	TTSAA	1 cut(s)	937
AjnI	CCWGG	1 cut(s)	396
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
AluBI	AGCT	5 cut(s)	218, 311, 572, 766, 979
AluI	AGCT	5 cut(s)	218, 311, 572, 766, 979
Alw21I	GWGCWC	2 cut(s)	220, 970
Alw26I	GTCTC	2 cut(s)	441, 683
Alw44I	GTGCAC	1 cut(s)	966
AlwI	GGATC	2 cut(s)	838, 953
AlwNI	CAGNNNCTG	1 cut(s)	766
Ama87I	CYCGRG	1 cut(s)	317
Aor13HI	TCCGGA	1 cut(s)	942
AoxI	GGCC	4 cut(s)	14, 536, 671, 864
ApaLI	GTGCAC	1 cut(s)	966
ApeKI	GCWGC	5 cut(s)	152, 406, 578, 760, 763
ApoI	RAATTY	3 cut(s)	475, 781, 938
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	4 cut(s)	206, 536, 671, 864
AsuC2I	CCSGG	3 cut(s)	318, 319, 678
AsuHPI	GGTGA	5 cut(s)	176, 221, 386, 667, 896
AsuII	TTCGAA	1 cut(s)	602
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	206
BaeGI	GKGCMC	1 cut(s)	970
BanI	GGYRCC	1 cut(s)	649
BanII	GRGCYC	1 cut(s)	220
BbrPI	CACGTG	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	803
Bbv12I	GWGCWC	2 cut(s)	220, 970
BbvI	GCAGC	5 cut(s)	139, 418, 565, 772, 775
BccI	CCATC	2 cut(s)	131, 615
BciT130I	CCWGG	1 cut(s)	398
BcnI	CCSGG	3 cut(s)	318, 319, 678
BcoDI	GTCTC	2 cut(s)	441, 683
BfaI	CTAG	2 cut(s)	213, 441
BfmI	CTRYAG	1 cut(s)	335
BfoI	RGCGCY	1 cut(s)	74
BlpI	GCTNAGC	1 cut(s)	219
Bme1390I	CCNGG	4 cut(s)	318, 319, 398, 678
Bme18I	GGWCC	1 cut(s)	206
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	4 cut(s)	206, 536, 671, 864
BmiI	GGNNCC	2 cut(s)	537, 651
BmrFI	CCNGG	4 cut(s)	318, 319, 398, 678
BmsI	GCATC	1 cut(s)	232
BpiI	GAAGAC	1 cut(s)	803
BplI	GAGNNNNNCTC	2 cut(s)	853, 885
Bpu1102I	GCTNAGC	1 cut(s)	219
Bpu14I	TTCGAA	1 cut(s)	602
BpuEI	CTTGAG	2 cut(s)	291, 898
BpuMI	CCSGG	3 cut(s)	318, 319, 678
Bsa29I	ATCGAT	1 cut(s)	833
BsaAI	YACGTR	1 cut(s)	83
BsaJI	CCNNGG	3 cut(s)	317, 558, 677
BsaWI	WCCGGW	1 cut(s)	942
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 106
Bse118I	RCCGGY	5 cut(s)	12, 31, 119, 148, 652
Bse1I	ACTGG	1 cut(s)	364
Bse3DI	GCAATG	1 cut(s)	408
BseAI	TCCGGA	1 cut(s)	942
BseBI	CCWGG	1 cut(s)	398
BseCI	ATCGAT	1 cut(s)	833
BseDI	CCNNGG	3 cut(s)	317, 558, 677
BseGI	GGATG	2 cut(s)	223, 568
BseLI	CCNNNNNNNGG	2 cut(s)	83, 106
BseMI	GCAATG	1 cut(s)	408
BseMII	CTCAG	2 cut(s)	233, 398
BseNI	ACTGG	1 cut(s)	364
BseRI	GAGGAG	5 cut(s)	258, 294, 303, 718, 761
BseSI	GKGCMC	1 cut(s)	970
BseXI	GCAGC	5 cut(s)	139, 418, 565, 772, 775
BshFI	GGCC	4 cut(s)	16, 538, 673, 866
BshNI	GGYRCC	1 cut(s)	649
BshVI	ATCGAT	1 cut(s)	833
BsiHKAI	GWGCWC	2 cut(s)	220, 970
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	9 cut(s)	13, 32, 120, 149, 275, 318, 653, 677, 943
BslFI	GGGAC	2 cut(s)	760, 837
BslI	CCNNNNNNNGG	2 cut(s)	83, 106
BsmAI	GTCTC	2 cut(s)	441, 683
BsmBI	CGTCTC	1 cut(s)	683
BsmFI	GGGAC	2 cut(s)	760, 837
BsmI	GAATGC	1 cut(s)	598
BsnI	GGCC	4 cut(s)	16, 538, 673, 866
BsoBI	CYCGRG	1 cut(s)	317
Bsp119I	TTCGAA	1 cut(s)	602
Bsp1286I	GDGCHC	2 cut(s)	220, 970
Bsp13I	TCCGGA	1 cut(s)	942
Bsp143I	GATC	3 cut(s)	830, 958, 1003
Bsp1720I	GCTNAGC	1 cut(s)	219
BspANI	GGCC	4 cut(s)	16, 538, 673, 866
BspCNI	CTCAG	2 cut(s)	232, 397
BspDI	ATCGAT	1 cut(s)	833
BspEI	TCCGGA	1 cut(s)	942
BspLI	GGNNCC	2 cut(s)	537, 651
BspPI	GGATC	2 cut(s)	838, 953
BspT104I	TTCGAA	1 cut(s)	602
BspT107I	GGYRCC	1 cut(s)	649
BsrDI	GCAATG	1 cut(s)	408
BsrFI	RCCGGY	5 cut(s)	12, 31, 119, 148, 652
BsrI	ACTGG	1 cut(s)	364
BssAI	RCCGGY	5 cut(s)	12, 31, 119, 148, 652
BssECI	CCNNGG	3 cut(s)	317, 558, 677
BssMI	GATC	3 cut(s)	830, 958, 1003
BssT1I	CCWWGG	1 cut(s)	558
Bst2UI	CCWGG	1 cut(s)	398
Bst6I	CTCTTC	3 cut(s)	286, 693, 713
BstBAI	YACGTR	1 cut(s)	83
BstBI	TTCGAA	1 cut(s)	602
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	2 cut(s)	219, 384
BstF5I	GGATG	2 cut(s)	223, 568
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	3 cut(s)	833, 961, 1006
BstMAI	GTCTC	2 cut(s)	441, 683
BstMBI	GATC	3 cut(s)	830, 958, 1003
BstNI	CCWGG	1 cut(s)	398
BstSCI	CCNGG	4 cut(s)	316, 317, 396, 676
BstSFI	CTRYAG	1 cut(s)	335
BstSLI	GKGCMC	1 cut(s)	970
BstV1I	GCAGC	5 cut(s)	139, 418, 565, 772, 775
BstV2I	GAAGAC	1 cut(s)	803
BstX2I	RGATCY	1 cut(s)	958
BstXI	CCANNNNNNTGG	1 cut(s)	565
BstYI	RGATCY	1 cut(s)	958
Bsu15I	ATCGAT	1 cut(s)	833
BsuRI	GGCC	4 cut(s)	16, 538, 673, 866
BsuTUI	ATCGAT	1 cut(s)	833
BtgZI	GCGATG	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	223, 568
Cac8I	GCNNGC	1 cut(s)	150
CaiI	CAGNNNCTG	1 cut(s)	766
CfoI	GCGC	1 cut(s)	73
Cfr10I	RCCGGY	5 cut(s)	12, 31, 119, 148, 652
Cfr13I	GGNCC	4 cut(s)	206, 536, 671, 864
Cfr9I	CCCGGG	1 cut(s)	317
ClaI	ATCGAT	1 cut(s)	833
Csp6I	GTAC	2 cut(s)	250, 358
CviAII	CATG	5 cut(s)	593, 611, 827, 982, 988
CviQI	GTAC	2 cut(s)	250, 358
DdeI	CTNAG	2 cut(s)	219, 384
DpnI	GATC	3 cut(s)	832, 960, 1005
DpnII	GATC	3 cut(s)	830, 958, 1003
EaeI	YGGCCR	1 cut(s)	14
Eam1104I	CTCTTC	3 cut(s)	286, 693, 713
EarI	CTCTTC	3 cut(s)	286, 693, 713
EciI	GGCGGA	2 cut(s)	30, 261
Ecl136II	GAGCTC	1 cut(s)	218
Eco130I	CCWWGG	1 cut(s)	558
Eco24I	GRGCYC	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	206
Eco53kI	GAGCTC	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	788
Eco72I	CACGTG	1 cut(s)	83
Eco88I	CYCGRG	1 cut(s)	317
EcoICRI	GAGCTC	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	558
EcoT38I	GRGCYC	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	558
Esp3I	CGTCTC	1 cut(s)	683
FaeI	CATG	5 cut(s)	596, 614, 830, 985, 991
FaqI	GGGAC	2 cut(s)	760, 837
FatI	CATG	5 cut(s)	592, 610, 826, 981, 987
FauI	CCCGC	5 cut(s)	30, 261, 474, 501, 579
FauNDI	CATATG	1 cut(s)	804
FokI	GGATG	2 cut(s)	210, 575
FriOI	GRGCYC	1 cut(s)	220
FspBI	CTAG	2 cut(s)	213, 441
GlaI	GCGC	1 cut(s)	72
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	4 cut(s)	16, 538, 673, 866
HapII	CCGG	9 cut(s)	13, 32, 120, 149, 275, 318, 653, 677, 943
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	5 cut(s)	596, 614, 830, 985, 991
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	4 cut(s)	55, 278, 616, 773
HpaII	CCGG	9 cut(s)	13, 32, 120, 149, 275, 318, 653, 677, 943
HphI	GGTGA	5 cut(s)	176, 221, 386, 667, 896
Hpy166II	GTNNAC	1 cut(s)	968
Hpy188III	TCNNGA	4 cut(s)	846, 877, 943, 956
Hpy8I	GTNNAC	1 cut(s)	968
HpyAV	CCTTC	3 cut(s)	168, 763, 814
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	4 cut(s)	406, 793, 839, 968
HpyF3I	CTNAG	2 cut(s)	219, 384
HpySE526I	ACGT	1 cut(s)	82
Hsp92II	CATG	5 cut(s)	596, 614, 830, 985, 991
HspAI	GCGC	1 cut(s)	71
Kpn2I	TCCGGA	1 cut(s)	942
KroI	GCCGGC	1 cut(s)	148
KroNI	GCCGGC	1 cut(s)	150
Kzo9I	GATC	3 cut(s)	830, 958, 1003
LmnI	GCTCC	3 cut(s)	160, 316, 569
Lsp1109I	GCAGC	5 cut(s)	139, 418, 565, 772, 775
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	2 cut(s)	213, 441
MaeII	ACGT	1 cut(s)	82
MaeIII	GTNAC	2 cut(s)	392, 843
MalI	GATC	3 cut(s)	832, 960, 1005
MboI	GATC	3 cut(s)	830, 958, 1003
MboII	GAAGA	8 cut(s)	153, 273, 670, 710, 727, 730, 808, 1003
MflI	RGATCY	1 cut(s)	958
MhlI	GDGCHC	2 cut(s)	220, 970
MluCI	AATT	5 cut(s)	103, 199, 475, 781, 938
MlyI	GAGTC	2 cut(s)	272, 782
MroI	TCCGGA	1 cut(s)	942
MroNI	GCCGGC	1 cut(s)	148
MslI	CAYNNNNRTG	2 cut(s)	925, 986
MspA1I	CMGCKG	1 cut(s)	766
MspI	CCGG	9 cut(s)	13, 32, 120, 149, 275, 318, 653, 677, 943
MspR9I	CCNGG	4 cut(s)	318, 319, 398, 678
Mva1269I	GAATGC	1 cut(s)	598
MvaI	CCWGG	1 cut(s)	398
NaeI	GCCGGC	1 cut(s)	150
NciI	CCSGG	3 cut(s)	318, 319, 678
NdeI	CATATG	1 cut(s)	804
NdeII	GATC	3 cut(s)	830, 958, 1003
NgoMIV	GCCGGC	1 cut(s)	148
NlaIII	CATG	5 cut(s)	596, 614, 830, 985, 991
NlaIV	GGNNCC	2 cut(s)	537, 651
NmuCI	GTSAC	2 cut(s)	392, 843
NspV	TTCGAA	1 cut(s)	602
PctI	GAATGC	1 cut(s)	598
PdiI	GCCGGC	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	55, 616
PleI	GAGTC	2 cut(s)	272, 781
PmaCI	CACGTG	1 cut(s)	83
PmlI	CACGTG	1 cut(s)	83
PpsI	GAGTC	2 cut(s)	272, 781
Ppu21I	YACGTR	1 cut(s)	83
PsiI	TTATAA	1 cut(s)	114
Psp124BI	GAGCTC	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	396
PspCI	CACGTG	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	396
PspN4I	GGNNCC	2 cut(s)	537, 651
PspPI	GGNCC	4 cut(s)	206, 536, 671, 864
PstNI	CAGNNNCTG	1 cut(s)	766
PsuI	RGATCY	1 cut(s)	958
PvuII	CAGCTG	1 cut(s)	766
RsaI	GTAC	2 cut(s)	251, 359
RsaNI	GTAC	2 cut(s)	250, 358
RseI	CAYNNNNRTG	2 cut(s)	925, 986
SacI	GAGCTC	1 cut(s)	220
Sau3AI	GATC	3 cut(s)	830, 958, 1003
Sau96I	GGNCC	4 cut(s)	206, 536, 671, 864
SchI	GAGTC	2 cut(s)	272, 782
ScrFI	CCNGG	4 cut(s)	318, 319, 398, 678
SduI	GDGCHC	2 cut(s)	220, 970
SetI	ASST	9 cut(s)	85, 220, 295, 313, 490, 574, 710, 768, 981
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	1 cut(s)	335
SfuI	TTCGAA	1 cut(s)	602
SinI	GGWCC	1 cut(s)	206
SmaI	CCCGGG	1 cut(s)	319
SmiMI	CAYNNNNRTG	2 cut(s)	925, 986
SmlI	CTYRAG	2 cut(s)	306, 877
SmoI	CTYRAG	2 cut(s)	306, 877
Sse9I	AATT	5 cut(s)	103, 199, 475, 781, 938
SspMI	CTAG	2 cut(s)	213, 441
SstI	GAGCTC	1 cut(s)	220
StyD4I	CCNGG	4 cut(s)	316, 317, 396, 676
StyI	CCWWGG	1 cut(s)	558
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	3 cut(s)	528, 602, 833
TasI	AATT	5 cut(s)	103, 199, 475, 781, 938
TatI	WGTACW	1 cut(s)	357
TfiI	GAWTC	2 cut(s)	55, 616
TseFI	GTSAC	2 cut(s)	392, 843
TseI	GCWGC	5 cut(s)	152, 406, 578, 760, 763
Tsp45I	GTSAC	2 cut(s)	392, 843
TspDTI	ATGAA	3 cut(s)	153, 273, 1004
TspGWI	ACGGA	2 cut(s)	633, 707
TspMI	CCCGGG	1 cut(s)	317
VneI	GTGCAC	1 cut(s)	966
VpaK11BI	GGWCC	1 cut(s)	206
XapI	RAATTY	3 cut(s)	475, 781, 938
XmaI	CCCGGG	1 cut(s)	317
XspI	CTAG	2 cut(s)	213, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.