pycom09g12860

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0028450
Physical Location & Seq
Reverse (-)
11383004 .. 11383856
853 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 540 bp
ATGCCTCTGTTTTATTGGATTCTACTGAAGAAATGCTTTCTGAGAAAGATTCTCGATGTAATCGACACGATCAAGTCAGAGCTTGAAAAAGCATGTCCTGGAGTTGTTTGTTGTGCTGATGTTCTTACTCTGGCAGTAAGAGATTGTGTTGCATTGGCTGGTGGCCCGCATACTGGAACGAGAGACAGCACTCTTTCTTTCCGTGACCTTGCAACATATGCGCTTCCTTCTCCGGAAGATGATCTGCCGCAGACGCTTGCTTCCTTTGCATCAAGGGGATTTGATGAAAGAGAAACTGTCAGCCTCTTCGGTATTCATCCTGCTTTCGCTTTTCTGTACCGCATTGGAATGATCCACTGCCAATTCTTCAAAAACCATCTCTACAATTTTAGTGGTACTCATAAGCCTGACCCATCGTTGGATGTTGAATTCCTTCGCCTCATGAGATCAAGATGCAACAACAGTCACTCGGTACCTGCTTCAGCACAAAAACTTACGGATTTGTGTCATCAACGAGAGCACCATCCCAATTCCACATAA

Protein Analysis

180

Amino Acids

20.14

Weight (kDa)

7.1

Isoelectric Point (pI)

36.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 14 - 157 2.3e-30 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0028450)

Species Orthologous Gene IDs
malus_domestica MD09G1211000.v1.1
pyrus_communis pycom09g12860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 484
Acc65I GGTACC 1 cut(s) 472
AccB1I GGYRCC 1 cut(s) 472
AccIII TCCGGA 1 cut(s) 232
AciI CCGC 3 cut(s) 167, 248, 340
AclWI GGATC 1 cut(s) 346
AcsI RAATTY 1 cut(s) 428
AcuI CTGAAG 2 cut(s) 47, 465
AfaI GTAC 3 cut(s) 338, 397, 474
AfiI CCNNNNNNNGG 2 cut(s) 173, 418
AgsI TTSAA 3 cut(s) 86, 370, 428
AjnI CCWGG 1 cut(s) 97
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
Alw21I GWGCWC 1 cut(s) 522
Alw26I GTCTC 1 cut(s) 177
AlwI GGATC 1 cut(s) 346
Aor13HI TCCGGA 1 cut(s) 232
AoxI GGCC 1 cut(s) 163
ApoI RAATTY 1 cut(s) 428
Asp700I GAANNNNTTC 1 cut(s) 432
Asp718I GGTACC 1 cut(s) 472
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 164
BanI GGYRCC 1 cut(s) 472
Bbv12I GWGCWC 1 cut(s) 522
BccI CCATC 3 cut(s) 384, 421, 531
BciT130I CCWGG 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 177
BfuAI ACCTGC 1 cut(s) 484
BisI GCNGC 1 cut(s) 248
BlsI GCNGC 1 cut(s) 249
Bme1390I CCNGG 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 1 cut(s) 474
BmrFI CCNGG 1 cut(s) 99
BmsI GCATC 2 cut(s) 278, 443
BpmI CTGGAG 1 cut(s) 120
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 418
Bse1I ACTGG 1 cut(s) 178
BseAI TCCGGA 1 cut(s) 232
BseBI CCWGG 1 cut(s) 99
BseGI GGATG 3 cut(s) 316, 427, 523
BseLI CCNNNNNNNGG 2 cut(s) 173, 418
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 1 cut(s) 178
BshFI GGCC 1 cut(s) 165
BshNI GGYRCC 1 cut(s) 472
BsiHKAI GWGCWC 1 cut(s) 522
BsiSI CCGG 1 cut(s) 233
BslI CCNNNNNNNGG 2 cut(s) 173, 418
BsmAI GTCTC 1 cut(s) 177
BsnI GGCC 1 cut(s) 165
Bsp1286I GDGCHC 1 cut(s) 522
Bsp13I TCCGGA 1 cut(s) 232
Bsp143I GATC 4 cut(s) 69, 241, 351, 446
BspACI CCGC 3 cut(s) 167, 248, 340
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 1 cut(s) 33
BspEI TCCGGA 1 cut(s) 232
BspHI TCATGA 1 cut(s) 441
BspLI GGNNCC 1 cut(s) 474
BspMI ACCTGC 1 cut(s) 484
BspPI GGATC 1 cut(s) 346
BspT107I GGYRCC 1 cut(s) 472
BsrI ACTGG 1 cut(s) 178
BssMI GATC 4 cut(s) 69, 241, 351, 446
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 2 cut(s) 298, 464
Bst6I CTCTTC 1 cut(s) 311
BstAPI GCANNNNNTGC 1 cut(s) 218
BstC8I GCNNGC 2 cut(s) 167, 258
BstDEI CTNAG 1 cut(s) 41
BstF5I GGATG 3 cut(s) 316, 427, 523
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 4 cut(s) 72, 244, 354, 449
BstMAI GTCTC 1 cut(s) 177
BstMBI GATC 4 cut(s) 69, 241, 351, 446
BstMWI GCNNNNNNNGC 3 cut(s) 218, 253, 266
BstNI CCWGG 1 cut(s) 99
BstNSI RCATGY 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 97
BsuRI GGCC 1 cut(s) 165
BtsCI GGATG 3 cut(s) 316, 427, 523
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 1 cut(s) 355
BveI ACCTGC 1 cut(s) 484
Cac8I GCNNGC 2 cut(s) 167, 258
CciI TCATGA 1 cut(s) 441
CfoI GCGC 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 164
CseI GACGC 1 cut(s) 262
Csp6I GTAC 3 cut(s) 337, 396, 473
CspCI CAANNNNNGTGG 2 cut(s) 373, 408
CviAII CATG 2 cut(s) 93, 442
CviJI RGCY 5 cut(s) 82, 158, 165, 303, 406
CviKI_1 RGCY 5 cut(s) 82, 158, 165, 303, 406
CviQI GTAC 3 cut(s) 337, 396, 473
DdeI CTNAG 1 cut(s) 41
DpnI GATC 4 cut(s) 71, 243, 353, 448
DpnII GATC 4 cut(s) 69, 241, 351, 446
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Eco57I CTGAAG 2 cut(s) 47, 465
EcoRI GAATTC 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 97
FaeI CATG 2 cut(s) 96, 445
FaiI YATR 7 cut(s) 94, 171, 217, 219, 402, 443, 538
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FatI CATG 2 cut(s) 92, 441
FauI CCCGC 1 cut(s) 174
FauNDI CATATG 1 cut(s) 217
Fnu4HI GCNGC 1 cut(s) 248
FokI GGATG 3 cut(s) 303, 434, 510
Fsp4HI GCNGC 1 cut(s) 248
GlaI GCGC 1 cut(s) 222
GluI GCNGC 1 cut(s) 248
GsuI CTGGAG 1 cut(s) 120
HaeIII GGCC 1 cut(s) 165
HapII CCGG 1 cut(s) 233
HgaI GACGC 1 cut(s) 262
HhaI GCGC 1 cut(s) 223
Hin1II CATG 2 cut(s) 96, 445
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HinfI GANTC 2 cut(s) 19, 49
HpaII CCGG 1 cut(s) 233
Hpy188I TCNGA 2 cut(s) 42, 79
Hpy188III TCNNGA 4 cut(s) 53, 233, 442, 450
HpyAV CCTTC 2 cut(s) 237, 443
HpyCH4III ACNGT 2 cut(s) 298, 464
HpyCH4V TGCA 4 cut(s) 152, 212, 269, 456
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 253, 266
HpyF3I CTNAG 1 cut(s) 41
Hsp92II CATG 2 cut(s) 96, 445
HspAI GCGC 1 cut(s) 221
Kpn2I TCCGGA 1 cut(s) 232
KpnI GGTACC 1 cut(s) 476
Kzo9I GATC 4 cut(s) 69, 241, 351, 446
LpnPI CCDG 9 cut(s) 84, 111, 116, 144, 159, 246, 333, 420, 489
LweI GCATC 2 cut(s) 278, 443
MaeIII GTNAC 2 cut(s) 203, 464
MalI GATC 4 cut(s) 71, 243, 353, 448
MboI GATC 4 cut(s) 69, 241, 351, 446
MboII GAAGA 4 cut(s) 40, 248, 298, 358
MhlI GDGCHC 1 cut(s) 522
MluCI AATT 4 cut(s) 362, 385, 428, 529
MmeI TCCRAC 1 cut(s) 399
MnlI CCTC 3 cut(s) 15, 314, 449
MroI TCCGGA 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 432
MslI CAYNNNNRTG 1 cut(s) 347
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 99
MvaI CCWGG 1 cut(s) 99
MwoI GCNNNNNNNGC 3 cut(s) 218, 253, 266
NdeI CATATG 1 cut(s) 217
NdeII GATC 4 cut(s) 69, 241, 351, 446
NlaIII CATG 2 cut(s) 96, 445
NlaIV GGNNCC 1 cut(s) 474
NmuCI GTSAC 2 cut(s) 203, 464
NspI RCATGY 1 cut(s) 96
PagI TCATGA 1 cut(s) 441
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 432
PfeI GAWTC 2 cut(s) 19, 49
PfoI TCCNGGA 1 cut(s) 97
PkrI GCNGC 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PspN4I GGNNCC 1 cut(s) 474
PspPI GGNCC 1 cut(s) 164
RsaI GTAC 3 cut(s) 338, 397, 474
RsaNI GTAC 3 cut(s) 337, 396, 473
RseI CAYNNNNRTG 1 cut(s) 347
SatI GCNGC 1 cut(s) 248
Sau3AI GATC 4 cut(s) 69, 241, 351, 446
Sau96I GGNCC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 99
SduI GDGCHC 1 cut(s) 522
SetI ASST 3 cut(s) 84, 210, 478
SfaNI GCATC 2 cut(s) 278, 443
SmiMI CAYNNNNRTG 1 cut(s) 347
Sse9I AATT 4 cut(s) 362, 385, 428, 529
SsiI CCGC 3 cut(s) 167, 248, 340
StyD4I CCNGG 1 cut(s) 97
TaaI ACNGT 2 cut(s) 298, 464
TaqI TCGA 2 cut(s) 54, 63
TasI AATT 4 cut(s) 362, 385, 428, 529
TauI GCSGC 1 cut(s) 250
TfiI GAWTC 2 cut(s) 19, 49
TscAI CASTG 1 cut(s) 362
TseFI GTSAC 2 cut(s) 203, 464
Tsp45I GTSAC 2 cut(s) 203, 464
TspDTI ATGAA 2 cut(s) 300, 305
TspGWI ACGGA 2 cut(s) 191, 512
TspRI CASTG 1 cut(s) 362
XapI RAATTY 1 cut(s) 428
XceI RCATGY 1 cut(s) 96
XmnI GAANNNNTTC 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.