pycom09g17160

LisH domain and HEAT repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0029369
Physical Location & Seq
Reverse (-)
17583315 .. 17583581
267 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g17160.1

Sequence Viewer

Length: 267 bp
ATGAAGGACAGATCTGGTGGAACTTTCGACACTATCAGTAAGGTGATGGGGGCTGGGCTTGCATCATCCGTGAGTAGTTTCTTTGGTGAAGGTGGTCTACTGGGAAAGAAAGAAAGTCCTGAGCCACCACCGGAGCTGGTTGAGTCCCCGAAGGCTGCACCATTACCACCTGCAGAAGACACTAGATTAAGGCGAATCATGCGGGGAAATTTCACTGACATGCTGAGAGGCAAAGCAAAGGGACCAGAGGAAACTCAGAACCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.39

Weight (kDa)

8.07

Isoelectric Point (pI)

59.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029369)

Species Orthologous Gene IDs
pyrus_communis pycom09g17160
rosa_chinensis RchiOBHm_Chr3g0494131

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 178
Acc36I ACCTGC 1 cut(s) 178
AccI GTMKAC 1 cut(s) 97
AciI CCGC 1 cut(s) 202
AcsI RAATTY 1 cut(s) 208
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 2 cut(s) 55, 98
AvaII GGWCC 1 cut(s) 242
BarI GAAGNNNNNNTAC 2 cut(s) 81, 113
BbsI GAAGAC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 142
BccI CCATC 1 cut(s) 40
BfaI CTAG 1 cut(s) 183
BfmI CTRYAG 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 178
BglII AGATCT 1 cut(s) 11
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme18I GGWCC 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 243
BmrI ACTGGG 1 cut(s) 110
BmsI GCATC 1 cut(s) 71
BmuI ACTGGG 1 cut(s) 110
BpiI GAAGAC 1 cut(s) 183
Bpu10I CCTNAGC 1 cut(s) 120
BsaWI WCCGGW 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 65
BseMII CTCAG 2 cut(s) 111, 215
BseNI ACTGG 1 cut(s) 105
BseXI GCAGC 1 cut(s) 142
BseYI CCCAGC 1 cut(s) 53
BsgI GTGCAG 1 cut(s) 141
BsiSI CCGG 1 cut(s) 131
BslFI GGGAC 2 cut(s) 130, 255
BsmFI GGGAC 2 cut(s) 130, 255
Bsp143I GATC 1 cut(s) 11
BspACI CCGC 1 cut(s) 202
BspCNI CTCAG 2 cut(s) 112, 216
BspLI GGNNCC 1 cut(s) 243
BspMAI CTGCAG 1 cut(s) 175
BspMI ACCTGC 1 cut(s) 178
BsrI ACTGG 1 cut(s) 105
BssMI GATC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 3 cut(s) 120, 224, 255
BstF5I GGATG 1 cut(s) 65
BstKTI GATC 1 cut(s) 14
BstMBI GATC 1 cut(s) 11
BstMWI GCNNNNNNNGC 2 cut(s) 59, 199
BstNSI RCATGY 1 cut(s) 223
BstSFI CTRYAG 1 cut(s) 171
BstV1I GCAGC 1 cut(s) 142
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 11
BstYI RGATCY 1 cut(s) 11
BtsCI GGATG 1 cut(s) 65
BtsIMutI CAGTG 1 cut(s) 213
BveI ACCTGC 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 242
CviAII CATG 2 cut(s) 199, 220
CviJI RGCY 5 cut(s) 53, 58, 124, 136, 155
CviKI_1 RGCY 5 cut(s) 53, 58, 124, 136, 155
DdeI CTNAG 3 cut(s) 120, 224, 255
DpnI GATC 1 cut(s) 13
DpnII GATC 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 242
FaeI CATG 2 cut(s) 202, 223
FaiI YATR 2 cut(s) 200, 221
FaqI GGGAC 2 cut(s) 130, 255
FatI CATG 2 cut(s) 198, 219
FauI CCCGC 1 cut(s) 195
FblI GTMKAC 1 cut(s) 97
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 1 cut(s) 52
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 1 cut(s) 183
GluI GCNGC 1 cut(s) 156
GsaI CCCAGC 1 cut(s) 57
HapII CCGG 1 cut(s) 131
Hin1II CATG 2 cut(s) 202, 223
HinfI GANTC 2 cut(s) 143, 195
HpaII CCGG 1 cut(s) 131
HphI GGTGA 2 cut(s) 55, 98
Hpy166II GTNNAC 1 cut(s) 98
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 1 cut(s) 98
HpyAV CCTTC 2 cut(s) 83, 145
HpyCH4V TGCA 3 cut(s) 62, 158, 173
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 199
HpyF3I CTNAG 3 cut(s) 120, 224, 255
Hsp92II CATG 2 cut(s) 202, 223
Kzo9I GATC 1 cut(s) 11
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 7 cut(s) 39, 86, 122, 132, 144, 183, 258
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 1 cut(s) 71
MaeI CTAG 1 cut(s) 183
MalI GATC 1 cut(s) 13
MboI GATC 1 cut(s) 11
MboII GAAGA 1 cut(s) 188
MflI RGATCY 1 cut(s) 11
MluCI AATT 1 cut(s) 208
MlyI GAGTC 1 cut(s) 152
MnlI CCTC 2 cut(s) 221, 241
MseI TTAA 1 cut(s) 188
MslI CAYNNNNRTG 1 cut(s) 218
MspI CCGG 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 59, 199
NdeII GATC 1 cut(s) 11
NlaIII CATG 2 cut(s) 202, 223
NlaIV GGNNCC 1 cut(s) 243
NspI RCATGY 1 cut(s) 223
PaqCI CACCTGC 1 cut(s) 178
PfeI GAWTC 1 cut(s) 195
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
PspFI CCCAGC 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 243
PspPI GGNCC 1 cut(s) 242
PstI CTGCAG 1 cut(s) 175
PsuI RGATCY 1 cut(s) 11
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 1 cut(s) 188
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 1 cut(s) 11
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 1 cut(s) 152
SetI ASST 4 cut(s) 45, 94, 138, 172
SfaNI GCATC 1 cut(s) 71
SfcI CTRYAG 1 cut(s) 171
SinI GGWCC 1 cut(s) 242
SmiMI CAYNNNNRTG 1 cut(s) 218
Sse9I AATT 1 cut(s) 208
SsiI CCGC 1 cut(s) 202
SspMI CTAG 1 cut(s) 183
TaqI TCGA 1 cut(s) 27
TasI AATT 1 cut(s) 208
TfiI GAWTC 1 cut(s) 195
Tru1I TTAA 1 cut(s) 188
Tru9I TTAA 1 cut(s) 188
TscAI CASTG 1 cut(s) 220
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 58
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 242
XapI RAATTY 1 cut(s) 208
XceI RCATGY 1 cut(s) 223
XmiI GTMKAC 1 cut(s) 97
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.