Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0029370

Physical Location & Seq

Genomic Coordinates Reverse (-)

18610517 .. 18610846

Gene Structure 330 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGTCGAGGAGAATGGTGGTGGAGGGCCACCGTGAGACGGAGGATGAGTCGTCGAAAGACGGCGGCGAGGAGGAGGAAGAGTATGAGGTGCAGGATCGGAGGGACCGAATCAAATCGTCGCGCGGGAGCCAGTTCGATCTAATCAAGAACGAGTTAGGACTCGGCGACGGGTCTTCGACTTGGCGGCGGCGGTTCAGTCGTCAGAGCCTGATCGACGGCGTCAGAGGGCTCTCCAAAGGACTCGTCATTCATCCTGATAACTGGTACGACGCTTCCTCTTTCAGTTTCTTTTTCGTTTTATTTTTCCTTTTAAATATTGTGTCTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015271 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0033993 GO:0034220 GO:0042221 GO:0042391 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

110

Amino Acids

12.62

Weight (kDa)

5.2

Isoelectric Point (pI)

76.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029370)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g18010
rosa_multiflora	Rmu_sc0003579.1_g000004

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	121, 123
AciI	CCGC	5 cut(s)	63, 123, 184, 187, 190
AclWI	GGATC	1 cut(s)	102
AcyI	GRCGYC	1 cut(s)	219
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	37
Alw26I	GTCTC	1 cut(s)	29
AlwI	GGATC	1 cut(s)	102
AlwNI	CAGNNNCTG	1 cut(s)	208
AoxI	GGCC	1 cut(s)	25
ArsI	GACNNNNNNTTYG	2 cut(s)	228, 260
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	2 cut(s)	25, 103
AvaII	GGWCC	1 cut(s)	103
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	165
BceAI	ACGGC	2 cut(s)	76, 232
BcoDI	GTCTC	1 cut(s)	29
BisI	GCNGC	3 cut(s)	64, 185, 188
BlsI	GCNGC	3 cut(s)	65, 186, 189
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	2 cut(s)	25, 103
BmiI	GGNNCC	2 cut(s)	104, 128
BpiI	GAAGAC	1 cut(s)	165
BsaHI	GRCGYC	1 cut(s)	219
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 65, 95
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse1I	ACTGG	2 cut(s)	130, 266
BseGI	GGATG	2 cut(s)	49, 250
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseNI	ACTGG	2 cut(s)	130, 266
BseRI	GAGGAG	3 cut(s)	22, 83, 86
BsgI	GTGCAG	1 cut(s)	110
Bsh1236I	CGCG	2 cut(s)	121, 123
BshFI	GGCC	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	29
BsmBI	CGTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	94, 136, 210
BspACI	CCGC	5 cut(s)	63, 123, 184, 187, 190
BspANI	GGCC	1 cut(s)	27
BspFNI	CGCG	2 cut(s)	121, 123
BspLI	GGNNCC	2 cut(s)	104, 128
BspPI	GGATC	1 cut(s)	102
BsrI	ACTGG	2 cut(s)	130, 266
BssMI	GATC	3 cut(s)	94, 136, 210
BssNI	GRCGYC	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	32
Bst6I	CTCTTC	1 cut(s)	72
BstACI	GRCGYC	1 cut(s)	219
BstF5I	GGATG	2 cut(s)	49, 250
BstFNI	CGCG	2 cut(s)	121, 123
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	3 cut(s)	97, 139, 213
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	3 cut(s)	94, 136, 210
BstUI	CGCG	2 cut(s)	121, 123
BstV2I	GAAGAC	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	27
BtsCI	GGATG	2 cut(s)	49, 250
CaiI	CAGNNNCTG	1 cut(s)	208
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	2 cut(s)	25, 103
CseI	GACGC	2 cut(s)	208, 278
Csp6I	GTAC	1 cut(s)	265
CviJI	RGCY	4 cut(s)	27, 129, 207, 229
CviKI_1	RGCY	4 cut(s)	27, 129, 207, 229
CviQI	GTAC	1 cut(s)	265
DpnI	GATC	3 cut(s)	96, 138, 212
DpnII	GATC	3 cut(s)	94, 136, 210
DraI	TTTAAA	1 cut(s)	312
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	231
Esp3I	CGTCTC	1 cut(s)	29
FaiI	YATR	2 cut(s)	84, 328
FaqI	GGGAC	1 cut(s)	116
FauI	CCCGC	1 cut(s)	116
Fnu4HI	GCNGC	3 cut(s)	64, 185, 188
FokI	GGATG	2 cut(s)	56, 237
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	3 cut(s)	64, 185, 188
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	3 cut(s)	64, 185, 188
HaeIII	GGCC	1 cut(s)	27
HgaI	GACGC	2 cut(s)	208, 278
HhaI	GCGC	1 cut(s)	123
Hin1I	GRCGYC	1 cut(s)	219
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HinfI	GANTC	4 cut(s)	47, 108, 159, 240
Hpy188I	TCNGA	3 cut(s)	99, 204, 224
Hpy188III	TCNNGA	2 cut(s)	145, 254
Hpy99I	CGWCG	5 cut(s)	55, 121, 170, 218, 272
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4V	TGCA	1 cut(s)	91
Hsp92I	GRCGYC	1 cut(s)	219
HspAI	GCGC	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	94, 136, 210
LmnI	GCTCC	1 cut(s)	126
LpnPI	CCDG	5 cut(s)	77, 143, 221, 247, 267
MalI	GATC	3 cut(s)	96, 138, 212
MboI	GATC	3 cut(s)	94, 136, 210
MboII	GAAGA	2 cut(s)	89, 165
MhlI	GDGCHC	1 cut(s)	231
MlyI	GAGTC	3 cut(s)	56, 153, 234
MnlI	CCTC	9 cut(s)	16, 34, 61, 64, 67, 79, 93, 218, 286
MseI	TTAA	1 cut(s)	311
MvnI	CGCG	2 cut(s)	121, 123
NdeII	GATC	3 cut(s)	94, 136, 210
NlaIV	GGNNCC	2 cut(s)	104, 128
NmeAIII	GCCGAG	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	108
PflFI	GACNNNGTC	1 cut(s)	218
PkrI	GCNGC	3 cut(s)	65, 186, 189
PleI	GAGTC	3 cut(s)	55, 153, 234
PpsI	GAGTC	3 cut(s)	55, 153, 234
PspN4I	GGNNCC	2 cut(s)	104, 128
PspPI	GGNCC	2 cut(s)	25, 103
PstNI	CAGNNNCTG	1 cut(s)	208
PsyI	GACNNNGTC	1 cut(s)	218
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	3 cut(s)	64, 185, 188
Sau3AI	GATC	3 cut(s)	94, 136, 210
Sau96I	GGNCC	2 cut(s)	25, 103
SchI	GAGTC	3 cut(s)	56, 153, 234
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	1 cut(s)	90
SinI	GGWCC	1 cut(s)	103
SsiI	CCGC	5 cut(s)	63, 123, 184, 187, 190
SspI	AATATT	1 cut(s)	316
TaaI	ACNGT	1 cut(s)	32
TaqI	TCGA	5 cut(s)	5, 53, 135, 176, 213
TaqII	GACCGA	1 cut(s)	120
TauI	GCSGC	3 cut(s)	66, 187, 190
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TspDTI	ATGAA	1 cut(s)	239
TspGWI	ACGGA	1 cut(s)	53
Tth111I	GACNNNGTC	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.