Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003579.1

Orthogroup ID

OG0029370

Physical Location & Seq

Genomic Coordinates Forward (+)

31306 .. 31689

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003579.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgcgtgggtatcataaacagaagaagaagggcaaaatgtcgaggagagtagtggaggacgaggacgtggacgaggttggggatgatgatgaggaggaagagaacgagtatgaggtgcaggatctgcgggaccggatcaagtcgtcacggggaagcagattcaatctgatatcgaacgatttggggctggatggatcgtcgacgtcgacgactgggaggagaatgaggaactacttgagccgagagagcgtcatcaatggcgtcaaaggcctctccaagggcatcggcgttattcatccagacaacaggtacccttttcactgctcttgtacctccttcaaccttttttttgggttaatttatcgaaaaaagaaacaaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015271 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0033993 GO:0034220 GO:0042221 GO:0042391 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

127

Amino Acids

14.67

Weight (kDa)

8.88

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029370)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g18010
rosa_multiflora	Rmu_sc0003579.1_g000004

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	206
Acc65I	GGTACC	1 cut(s)	309
AccB1I	GGYRCC	1 cut(s)	309
AccI	GTMKAC	2 cut(s)	200, 206
AciI	CCGC	1 cut(s)	127
AclWI	GGATC	3 cut(s)	129, 143, 202
AcyI	GRCGYC	2 cut(s)	203, 261
AfaI	GTAC	2 cut(s)	311, 331
AfiI	CCNNNNNNNGG	1 cut(s)	277
AgsI	TTSAA	2 cut(s)	163, 340
AjiI	CACGTC	1 cut(s)	67
AlwI	GGATC	3 cut(s)	129, 143, 202
AlwNI	CAGNNNCTG	1 cut(s)	124
AoxI	GGCC	1 cut(s)	268
Asp718I	GGTACC	1 cut(s)	309
AspS9I	GGNCC	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	130
BanI	GGYRCC	1 cut(s)	309
BccI	CCATC	1 cut(s)	185
Bme18I	GGWCC	1 cut(s)	130
BmgBI	CACGTC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	2 cut(s)	131, 311
BmrI	ACTGGG	1 cut(s)	222
BmsI	GCATC	1 cut(s)	291
BmuI	ACTGGG	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	256
BsaHI	GRCGYC	2 cut(s)	203, 261
BsaJI	CCNNGG	1 cut(s)	276
BsaWI	WCCGGW	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse1I	ACTGG	1 cut(s)	217
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	3 cut(s)	88, 196, 295
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseNI	ACTGG	1 cut(s)	217
BseRI	GAGGAG	3 cut(s)	58, 107, 232
BsgI	GTGCAG	1 cut(s)	137
BshFI	GGCC	1 cut(s)	270
BshNI	GGYRCC	1 cut(s)	309
BsiSI	CCGG	1 cut(s)	133
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	270
Bsp143I	GATC	3 cut(s)	121, 135, 194
BspACI	CCGC	1 cut(s)	127
BspANI	GGCC	1 cut(s)	270
BspLI	GGNNCC	2 cut(s)	131, 311
BspPI	GGATC	3 cut(s)	129, 143, 202
BspT107I	GGYRCC	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	3 cut(s)	121, 135, 194
BssNI	GRCGYC	2 cut(s)	203, 261
BssT1I	CCWWGG	1 cut(s)	276
Bst6I	CTCTTC	1 cut(s)	93
BstACI	GRCGYC	2 cut(s)	203, 261
BstAPI	GCANNNNNTGC	1 cut(s)	124
BstENI	CCTNNNNNAGG	1 cut(s)	275
BstF5I	GGATG	3 cut(s)	88, 196, 295
BstKTI	GATC	3 cut(s)	124, 138, 197
BstMBI	GATC	3 cut(s)	121, 135, 194
BstMWI	GCNNNNNNNGC	3 cut(s)	124, 246, 267
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	270
BtrI	CACGTC	1 cut(s)	67
BtsCI	GGATG	3 cut(s)	88, 196, 295
BtsI	GCAGTG	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	319
CaiI	CAGNNNCTG	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	130
CseI	GACGC	2 cut(s)	238, 250
Csp6I	GTAC	2 cut(s)	310, 330
CviJI	RGCY	3 cut(s)	187, 240, 270
CviKI_1	RGCY	3 cut(s)	187, 240, 270
CviQI	GTAC	2 cut(s)	310, 330
DpnI	GATC	3 cut(s)	123, 137, 196
DpnII	GATC	3 cut(s)	121, 135, 194
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	276
Eco147I	AGGCCT	1 cut(s)	270
Eco32I	GATATC	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	130
EcoNI	CCTNNNNNAGG	1 cut(s)	275
EcoRV	GATATC	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	276
FaiI	YATR	2 cut(s)	15, 111
FaqI	GGGAC	1 cut(s)	143
FauI	CCCGC	1 cut(s)	120
FblI	GTMKAC	2 cut(s)	200, 206
FokI	GGATG	3 cut(s)	95, 203, 282
HaeIII	GGCC	1 cut(s)	270
HapII	CCGG	1 cut(s)	133
HgaI	GACGC	2 cut(s)	238, 250
Hin1I	GRCGYC	2 cut(s)	203, 261
HincII	GTYRAC	2 cut(s)	201, 207
HindII	GTYRAC	2 cut(s)	201, 207
HinfI	GANTC	1 cut(s)	159
HpaII	CCGG	1 cut(s)	133
Hpy166II	GTNNAC	3 cut(s)	70, 201, 207
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	1 cut(s)	299
Hpy8I	GTNNAC	3 cut(s)	70, 201, 207
Hpy99I	CGWCG	4 cut(s)	202, 205, 208, 211
HpyAV	CCTTC	2 cut(s)	22, 346
HpyCH4IV	ACGT	2 cut(s)	66, 203
HpyCH4V	TGCA	1 cut(s)	118
HpyF10VI	GCNNNNNNNGC	3 cut(s)	124, 246, 267
HpySE526I	ACGT	2 cut(s)	66, 203
Hsp92I	GRCGYC	2 cut(s)	203, 261
KpnI	GGTACC	1 cut(s)	313
Kzo9I	GATC	3 cut(s)	121, 135, 194
LpnPI	CCDG	6 cut(s)	104, 146, 173, 198, 292, 312
LweI	GCATC	1 cut(s)	291
MaeII	ACGT	2 cut(s)	66, 203
MaeIII	GTNAC	1 cut(s)	144
MalI	GATC	3 cut(s)	123, 137, 196
MboI	GATC	3 cut(s)	121, 135, 194
MboII	GAAGA	3 cut(s)	34, 37, 110
MflI	RGATCY	1 cut(s)	121
MluCI	AATT	2 cut(s)	357, 379
MseI	TTAA	2 cut(s)	356, 382
MspI	CCGG	1 cut(s)	133
MwoI	GCNNNNNNNGC	3 cut(s)	124, 246, 267
NdeII	GATC	3 cut(s)	121, 135, 194
NlaIV	GGNNCC	2 cut(s)	131, 311
NmeAIII	GCCGAG	1 cut(s)	266
NmuCI	GTSAC	1 cut(s)	144
PceI	AGGCCT	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	2 cut(s)	203, 206
PfeI	GAWTC	1 cut(s)	159
PspN4I	GGNNCC	2 cut(s)	131, 311
PspPI	GGNCC	1 cut(s)	130
PstNI	CAGNNNCTG	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	2 cut(s)	311, 331
RsaNI	GTAC	2 cut(s)	310, 330
SalI	GTCGAC	2 cut(s)	199, 205
SaqAI	TTAA	2 cut(s)	356, 382
Sau3AI	GATC	3 cut(s)	121, 135, 194
Sau96I	GGNCC	1 cut(s)	130
SetI	ASST	7 cut(s)	69, 78, 117, 206, 311, 335, 345
SfaNI	GCATC	1 cut(s)	291
SgrDI	CGTCGACG	2 cut(s)	199, 205
SinI	GGWCC	1 cut(s)	130
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	2 cut(s)	357, 379
SseBI	AGGCCT	1 cut(s)	270
SsiI	CCGC	1 cut(s)	127
StuI	AGGCCT	1 cut(s)	270
StyI	CCWWGG	1 cut(s)	276
TaiI	ACGT	2 cut(s)	69, 206
TaqI	TCGA	5 cut(s)	41, 173, 200, 206, 364
TasI	AATT	2 cut(s)	357, 379
TfiI	GAWTC	1 cut(s)	159
Tru1I	TTAA	2 cut(s)	356, 382
Tru9I	TTAA	2 cut(s)	356, 382
TscAI	CASTG	1 cut(s)	326
TseFI	GTSAC	1 cut(s)	144
Tsp45I	GTSAC	1 cut(s)	144
TspDTI	ATGAA	1 cut(s)	284
TspRI	CASTG	1 cut(s)	326
VpaK11BI	GGWCC	1 cut(s)	130
XagI	CCTNNNNNAGG	1 cut(s)	275
XmiI	GTMKAC	2 cut(s)	200, 206
ZraI	GACGTC	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.