Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0028550

Physical Location & Seq

Genomic Coordinates Reverse (-)

19954 .. 20428

Gene Structure 475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAATAACGATTTTGTGACGCGTGCGATCCTCGACCGCTTCCTTCCTTATCCCCCGTCCCTCCTCACGTCATCTGGCAAACCTTCGTCCCTCTTCACCTTATCTAACACCATGAGCCGGAAGAGAGACAAACCTTACTTCTCCCGCCACGCCCCCTACTTCGGGTTGAAACACAGTCGTCCATTGCCTCCACGTTCGGAACCCAAACCCGAGCTCGACAAGCCCACTTACAAGCAACCTACCTTGCCGCCGACTCCGCTCAAGCCGCCATCGCTGCCTCTCTCGACCCATCATTCAGTATCACCATCGAATAAAAAAAACTACAGGTGCTTTGGCCGACAGACTCACTTGCCCAGTGGCGGAAGGGAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

125

Amino Acids

14.06

Weight (kDa)

10.41

Isoelectric Point (pI)

61.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028550)

Species	Orthologous Gene IDs
malus_domestica	MD16G1079600.v1.1
pyrus_communis	pycom10g00030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	259
AccII	CGCG	1 cut(s)	22
AciI	CCGC	6 cut(s)	37, 145, 248, 257, 266, 360
AclWI	GGATC	1 cut(s)	22
AcoI	YGGCCR	1 cut(s)	334
AfiI	CCNNNNNNNGG	4 cut(s)	117, 161, 162, 359
AflIII	ACRYGT	1 cut(s)	20
AgsI	TTSAA	1 cut(s)	169
AjiI	CACGTC	1 cut(s)	69
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	1 cut(s)	22
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	1 cut(s)	334
ApeKI	GCWGC	1 cut(s)	274
AsuHPI	GGTGA	2 cut(s)	88, 294
AvaI	CYCGRG	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	261
BccI	CCATC	3 cut(s)	277, 297, 313
BcoDI	GTCTC	1 cut(s)	120
BfmI	CTRYAG	1 cut(s)	322
BisI	GCNGC	3 cut(s)	248, 266, 275
BlsI	GCNGC	3 cut(s)	249, 267, 276
BmeT110I	CYCGRG	1 cut(s)	209
BmgBI	CACGTC	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	201
BmrI	ACTGGG	1 cut(s)	348
BmuI	ACTGGG	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	4 cut(s)	117, 161, 162, 359
Bse1I	ACTGG	1 cut(s)	354
Bse3DI	GCAATG	1 cut(s)	182
BseLI	CCNNNNNNNGG	4 cut(s)	117, 161, 162, 359
BseMI	GCAATG	1 cut(s)	182
BseNI	ACTGG	1 cut(s)	354
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	261
Bsh1236I	CGCG	1 cut(s)	22
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	1 cut(s)	336
BsiEI	CGRYCG	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	216
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	118
BslFI	GGGAC	2 cut(s)	43, 73
BslI	CCNNNNNNNGG	4 cut(s)	117, 161, 162, 359
BsmAI	GTCTC	1 cut(s)	120
BsmFI	GGGAC	2 cut(s)	43, 73
BsnI	GGCC	1 cut(s)	336
BsoBI	CYCGRG	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	27
BspACI	CCGC	6 cut(s)	37, 145, 248, 257, 266, 360
BspANI	GGCC	1 cut(s)	336
BspFNI	CGCG	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	201
BspPI	GGATC	1 cut(s)	22
BsrBI	CCGCTC	1 cut(s)	259
BsrDI	GCAATG	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	354
BssMI	GATC	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	176
Bst6I	CTCTTC	2 cut(s)	98, 116
BstC8I	GCNNGC	1 cut(s)	24
BstFNI	CGCG	1 cut(s)	22
BstKTI	GATC	1 cut(s)	30
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	27
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	5 cut(s)	220, 256, 265, 271, 274
BstSFI	CTRYAG	1 cut(s)	322
BstUI	CGCG	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	336
BtgZI	GCGATG	1 cut(s)	255
BtrI	CACGTC	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	24
CseI	GACGC	1 cut(s)	28
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	5 cut(s)	117, 214, 223, 265, 336
CviKI_1	RGCY	5 cut(s)	117, 214, 223, 265, 336
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
EaeI	YGGCCR	1 cut(s)	334
Eam1104I	CTCTTC	2 cut(s)	98, 116
EarI	CTCTTC	2 cut(s)	98, 116
EciI	GGCGGA	1 cut(s)	375
Ecl136II	GAGCTC	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	216
Eco53kI	GAGCTC	1 cut(s)	214
Eco88I	CYCGRG	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	214
EcoT38I	GRGCYC	1 cut(s)	216
FaeI	CATG	1 cut(s)	115
FaiI	YATR	1 cut(s)	113
FaqI	GGGAC	2 cut(s)	43, 73
FatI	CATG	1 cut(s)	111
FauI	CCCGC	1 cut(s)	152
Fnu4HI	GCNGC	3 cut(s)	248, 266, 275
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	3 cut(s)	248, 266, 275
GluI	GCNGC	3 cut(s)	248, 266, 275
HaeIII	GGCC	1 cut(s)	336
HapII	CCGG	1 cut(s)	118
HgaI	GACGC	1 cut(s)	28
Hin1II	CATG	1 cut(s)	115
HinfI	GANTC	2 cut(s)	253, 343
HpaII	CCGG	1 cut(s)	118
HphI	GGTGA	2 cut(s)	88, 294
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	1 cut(s)	283
HpyAV	CCTTC	3 cut(s)	53, 93, 357
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4IV	ACGT	2 cut(s)	68, 193
HpyF10VI	GCNNNNNNNGC	5 cut(s)	220, 256, 265, 271, 274
HpySE526I	ACGT	2 cut(s)	68, 193
Hsp92II	CATG	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	27
LpnPI	CCDG	4 cut(s)	60, 131, 310, 367
Lsp1109I	GCAGC	1 cut(s)	261
MaeII	ACGT	2 cut(s)	68, 193
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	1 cut(s)	29
MbiI	CCGCTC	1 cut(s)	259
MboI	GATC	1 cut(s)	27
MboII	GAAGA	2 cut(s)	85, 133
MhlI	GDGCHC	1 cut(s)	216
MluI	ACGCGT	1 cut(s)	20
MlyI	GAGTC	2 cut(s)	247, 337
MnlI	CCTC	6 cut(s)	41, 71, 74, 101, 198, 288
MspI	CCGG	1 cut(s)	118
MvnI	CGCG	1 cut(s)	22
MwoI	GCNNNNNNNGC	5 cut(s)	220, 256, 265, 271, 274
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	1 cut(s)	115
NlaIV	GGNNCC	1 cut(s)	201
NmuCI	GTSAC	1 cut(s)	16
PkrI	GCNGC	3 cut(s)	249, 267, 276
PleI	GAGTC	2 cut(s)	247, 337
PpsI	GAGTC	2 cut(s)	247, 337
Psp124BI	GAGCTC	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	201
SacI	GAGCTC	1 cut(s)	216
SatI	GCNGC	3 cut(s)	248, 266, 275
Sau3AI	GATC	1 cut(s)	27
SchI	GAGTC	2 cut(s)	247, 337
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	9 cut(s)	71, 85, 101, 136, 196, 216, 241, 245, 329
SfcI	CTRYAG	1 cut(s)	322
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SsiI	CCGC	6 cut(s)	37, 145, 248, 257, 266, 360
SstI	GAGCTC	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	176
TaiI	ACGT	2 cut(s)	71, 196
TaqI	TCGA	4 cut(s)	33, 216, 284, 308
TauI	GCSGC	2 cut(s)	250, 268
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	1 cut(s)	274
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.