Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0029374

Physical Location & Seq

Genomic Coordinates Forward (+)

1796621 .. 1796989

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g01700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGCAGACGGTAGGGGAAAGAAAAAAAAGCAAAAGCCCACAACATCTGCAGCTGAAGCCGGGTTTTCTATTAGTAGGCTTGAAATCTGCGTTGGCCTTGTTACTAAAGCTGAGAAGCGTCCTGATGCTGATTCACTTTACGTGGCGGATACTGATGTTGGTGAAGGACAAACTAGAACAGTGGTTAGTGGACTAGTCAAATACACACCTCTCGGAAAAATGCAGGAAACTATGTGTTTTTTGCAATTTGAAGTCAGCAAACATGTGGGGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

92

Amino Acids

9.89

Weight (kDa)

8.95

Isoelectric Point (pI)

17.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029374)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g01700 pycom10g01720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	146
AcuI	CTGAAG	1 cut(s)	75
AflIII	ACRYGT	1 cut(s)	262
AgsI	TTSAA	2 cut(s)	83, 251
AhlI	ACTAGT	1 cut(s)	193
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AluBI	AGCT	2 cut(s)	53, 110
AluI	AGCT	2 cut(s)	53, 110
AoxI	GGCC	1 cut(s)	94
ApeKI	GCWGC	1 cut(s)	50
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	1 cut(s)	173
BaeI	ACNNNNGTAYC	2 cut(s)	141, 174
BbvI	GCAGC	1 cut(s)	62
BciVI	GTATCC	1 cut(s)	142
BcnI	CCSGG	1 cut(s)	61
BcuI	ACTAGT	1 cut(s)	193
BfaI	CTAG	2 cut(s)	174, 194
BfmI	CTRYAG	1 cut(s)	48
BfuI	GTATCC	1 cut(s)	142
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	61
BmsI	GCATC	1 cut(s)	115
BpuMI	CCSGG	1 cut(s)	61
BsaAI	YACGTR	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	62
BshFI	GGCC	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	60
BsnI	GGCC	1 cut(s)	96
BspACI	CCGC	1 cut(s)	146
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	1 cut(s)	103
BspMAI	CTGCAG	1 cut(s)	52
Bst4CI	ACNGT	2 cut(s)	11, 181
BstBAI	YACGTR	1 cut(s)	142
BstDEI	CTNAG	1 cut(s)	111
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNSI	RCATGY	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	59
BstSFI	CTRYAG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	62
BsuI	GTATCC	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	186
CseI	GACGC	1 cut(s)	107
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	6 cut(s)	37, 53, 59, 79, 96, 110
CviKI_1	RGCY	6 cut(s)	37, 53, 59, 79, 96, 110
DdeI	CTNAG	1 cut(s)	111
EciI	GGCGGA	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	75
FaeI	CATG	1 cut(s)	266
FaiI	YATR	2 cut(s)	233, 264
FatI	CATG	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	2 cut(s)	174, 194
GluI	GCNGC	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	1 cut(s)	60
HgaI	GACGC	1 cut(s)	107
Hin1II	CATG	1 cut(s)	266
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188I	TCNGA	1 cut(s)	215
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	1 cut(s)	191
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	2 cut(s)	11, 181
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	3 cut(s)	50, 223, 244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	1 cut(s)	111
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	266
LpnPI	CCDG	3 cut(s)	73, 135, 209
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	2 cut(s)	174, 194
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	100
MluCI	AATT	1 cut(s)	245
MnlI	CCTC	1 cut(s)	219
MseI	TTAA	1 cut(s)	274
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	61
MwoI	GCNNNNNNNGC	1 cut(s)	56
NciI	CCSGG	1 cut(s)	61
NlaIII	CATG	1 cut(s)	266
NspI	RCATGY	1 cut(s)	266
PciI	ACATGT	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	1 cut(s)	52
Ppu21I	YACGTR	1 cut(s)	142
PscI	ACATGT	1 cut(s)	262
PstI	CTGCAG	1 cut(s)	52
PvuII	CAGCTG	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	274
SatI	GCNGC	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	61
SetI	ASST	4 cut(s)	55, 112, 144, 211
SfaNI	GCATC	1 cut(s)	115
SfcI	CTRYAG	1 cut(s)	48
SpeI	ACTAGT	1 cut(s)	193
Sse9I	AATT	1 cut(s)	245
SsiI	CCGC	1 cut(s)	146
SspMI	CTAG	2 cut(s)	174, 194
StyD4I	CCNGG	1 cut(s)	59
TaaI	ACNGT	2 cut(s)	11, 181
TaiI	ACGT	1 cut(s)	144
TasI	AATT	1 cut(s)	245
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	274
Tru9I	TTAA	1 cut(s)	274
TscAI	CASTG	1 cut(s)	186
TseI	GCWGC	1 cut(s)	50
TspRI	CASTG	1 cut(s)	186
XceI	RCATGY	1 cut(s)	266
XspI	CTAG	2 cut(s)	174, 194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.