Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0029374

Physical Location & Seq

Genomic Coordinates Forward (+)

1811521 .. 1812940

Gene Structure 1420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGCTTGTCAAGTTATTTTTCAAGGTTGGAGCACTAGCCTTTGGTGTGGGGAACGGAAAAAACCAAGAGCCCACAACATCTGCAGCTGAAGCCGGGTTTTCTATTAGTAGGCTTGAAATTTGCGTTGGCCTCGTTACTAAAGCTGAGAAGCGTCCTGATGCTGATTCACTTTACGTGGCGGATACTGATTCAAATACACACCTCTCGGAAAAATGCAGGAAACTATGTGTTCTTTGCAATCTAAAGTCAGCAAACATGTGGGGTATTAAGTCACAAGCAGACGGTTCTTGCTGCTTCGAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

102

Amino Acids

10.86

Weight (kDa)

7.56

Isoelectric Point (pI)

12.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029374)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g01700 pycom10g01720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	179
AcsI	RAATTY	1 cut(s)	117
AcuI	CTGAAG	1 cut(s)	108
AflIII	ACRYGT	1 cut(s)	255
AgsI	TTSAA	3 cut(s)	22, 116, 192
AjuI	GAANNNNNNNTTGG	2 cut(s)	108, 140
AluBI	AGCT	2 cut(s)	86, 143
AluI	AGCT	2 cut(s)	86, 143
Alw21I	GWGCWC	1 cut(s)	34
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	2 cut(s)	83, 291
ApoI	RAATTY	1 cut(s)	117
AsuC2I	CCSGG	1 cut(s)	94
AsuII	TTCGAA	1 cut(s)	297
BanII	GRGCYC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	34
BbvI	GCAGC	2 cut(s)	95, 278
BciVI	GTATCC	1 cut(s)	175
BcnI	CCSGG	1 cut(s)	94
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	81
BfuI	GTATCC	1 cut(s)	175
BisI	GCNGC	2 cut(s)	84, 292
BlsI	GCNGC	2 cut(s)	85, 293
Bme1390I	CCNGG	1 cut(s)	94
BmrFI	CCNGG	1 cut(s)	94
BmsI	GCATC	1 cut(s)	148
Bpu14I	TTCGAA	1 cut(s)	297
BpuMI	CCSGG	1 cut(s)	94
BsaAI	YACGTR	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	135
BseXI	GCAGC	2 cut(s)	95, 278
BshFI	GGCC	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	93
BsnI	GGCC	1 cut(s)	129
Bsp119I	TTCGAA	1 cut(s)	297
Bsp1286I	GDGCHC	2 cut(s)	34, 72
BspACI	CCGC	1 cut(s)	179
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	136
BspMAI	CTGCAG	1 cut(s)	85
BspT104I	TTCGAA	1 cut(s)	297
Bst4CI	ACNGT	2 cut(s)	284, 303
BstBAI	YACGTR	1 cut(s)	175
BstBI	TTCGAA	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	144
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	1 cut(s)	92
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	95, 278
BsuI	GTATCC	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	129
CseI	GACGC	1 cut(s)	140
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	7 cut(s)	38, 70, 86, 92, 112, 129, 143
CviKI_1	RGCY	7 cut(s)	38, 70, 86, 92, 112, 129, 143
DdeI	CTNAG	1 cut(s)	144
EciI	GGCGGA	1 cut(s)	194
Eco24I	GRGCYC	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	72
FaeI	CATG	1 cut(s)	259
FaiI	YATR	2 cut(s)	226, 257
FatI	CATG	1 cut(s)	255
Fnu4HI	GCNGC	2 cut(s)	84, 292
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	2 cut(s)	84, 292
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	2 cut(s)	84, 292
HaeIII	GGCC	1 cut(s)	129
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	1 cut(s)	140
Hin1II	CATG	1 cut(s)	259
HinfI	GANTC	2 cut(s)	164, 188
HpaII	CCGG	1 cut(s)	93
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	1 cut(s)	155
HpyCH4III	ACNGT	2 cut(s)	284, 303
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	3 cut(s)	83, 216, 237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	1 cut(s)	144
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	1 cut(s)	259
LmnI	GCTCC	1 cut(s)	29
LpnPI	CCDG	3 cut(s)	106, 168, 202
Lsp1109I	GCAGC	2 cut(s)	95, 278
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	2 cut(s)	133, 270
MhlI	GDGCHC	2 cut(s)	34, 72
MluCI	AATT	1 cut(s)	117
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	2 cut(s)	140, 212
MseI	TTAA	1 cut(s)	267
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	89
NciI	CCSGG	1 cut(s)	94
NlaIII	CATG	1 cut(s)	259
NmuCI	GTSAC	1 cut(s)	270
NspI	RCATGY	1 cut(s)	259
NspV	TTCGAA	1 cut(s)	297
PciI	ACATGT	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	164, 188
PkrI	GCNGC	2 cut(s)	85, 293
Ppu21I	YACGTR	1 cut(s)	175
PscI	ACATGT	1 cut(s)	255
PstI	CTGCAG	1 cut(s)	85
PvuII	CAGCTG	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	2 cut(s)	84, 292
ScrFI	CCNGG	1 cut(s)	94
SduI	GDGCHC	2 cut(s)	34, 72
SetI	ASST	5 cut(s)	27, 88, 145, 177, 204
SfaNI	GCATC	1 cut(s)	148
SfcI	CTRYAG	1 cut(s)	81
SfuI	TTCGAA	1 cut(s)	297
Sse9I	AATT	1 cut(s)	117
SsiI	CCGC	1 cut(s)	179
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	92
TaaI	ACNGT	2 cut(s)	284, 303
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	1 cut(s)	297
TasI	AATT	1 cut(s)	117
TfiI	GAWTC	2 cut(s)	164, 188
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	270
TseI	GCWGC	2 cut(s)	83, 291
Tsp45I	GTSAC	1 cut(s)	270
TspGWI	ACGGA	1 cut(s)	69
XapI	RAATTY	1 cut(s)	117
XceI	RCATGY	1 cut(s)	259
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.