Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0028162

Physical Location & Seq

Genomic Coordinates Reverse (-)

2040013 .. 2040576

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGATTGCAGGTTATGGAGTTAATGGAAAAGGAGGAGAAGCTTTAAAAGTATTTGATCGGATGGTCAAGCACTCAGCTGTCAAGCCTGATGATGTAGCATTTCTCTTGATTTTATCTGCCTGTAGCAATTCGGGTTTGGAGAGCTGGAAAAGGCCTTGGAAATTGTTGAGCGCTCCAAATCCTGCTGCGCCCAATGTTTGGGGAGCCTTGCTTGGTGTTTGCCGGATCCATAACAAAGCAAAGCTTGGAGAGGTTGCAGCGAAGAATCTTATCTGGTTAGATCCCAAACATGAGGGGCATTGCATTTTGCTCTCGAATATATACGCCATTGACAATAATTGGGAAAATATGGCAAATCTCAGGAATTTGATAAAGGAGAAGGGGTTAAAGGCGATGTCAGGGCAGAGCATGGTCAAGGCGGCAGTTGACGCAGTTGCTATTAAAATTGATGGTTCCGGTCGGCGCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

157

Amino Acids

16.9

Weight (kDa)

9.45

Isoelectric Point (pI)

31.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	77 - 138	7.7e-12	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028162)

Species	Orthologous Gene IDs
malus_domestica	MD10G1029300.v1.1
pyrus_communis	pycom10g01950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	198
AccII	CGCG	1 cut(s)	465
AciI	CCGC	1 cut(s)	419
AclWI	GGATC	3 cut(s)	220, 233, 275
AcsI	RAATTY	1 cut(s)	364
AfeI	AGCGCT	1 cut(s)	172
AfiI	CCNNNNNNNGG	1 cut(s)	198
AluBI	AGCT	4 cut(s)	41, 77, 144, 244
AluI	AGCT	4 cut(s)	41, 77, 144, 244
AlwI	GGATC	3 cut(s)	220, 233, 275
Aor51HI	AGCGCT	1 cut(s)	172
AoxI	GGCC	1 cut(s)	152
ApeKI	GCWGC	2 cut(s)	185, 257
ApoI	RAATTY	1 cut(s)	364
AspLEI	GCGC	3 cut(s)	173, 190, 465
BamHI	GGATCC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	172, 269
BccI	CCATC	2 cut(s)	55, 443
BfmI	CTRYAG	1 cut(s)	121
BfoI	RGCGCY	1 cut(s)	174
BisI	GCNGC	3 cut(s)	186, 258, 420
BlsI	GCNGC	3 cut(s)	187, 259, 421
BmiI	GGNNCC	3 cut(s)	205, 227, 454
BsaJI	CCNNGG	1 cut(s)	155
BsaWI	WCCGGW	1 cut(s)	455
BsaXI	ACNNNNNCTCC	2 cut(s)	368, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	298
BseDI	CCNNGG	1 cut(s)	155
BseGI	GGATG	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	198
BseMI	GCAATG	1 cut(s)	298
BseMII	CTCAG	2 cut(s)	87, 373
BseRI	GAGGAG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	172, 269
Bsh1236I	CGCG	1 cut(s)	465
Bsh1285I	CGRYCG	1 cut(s)	460
BshFI	GGCC	1 cut(s)	154
BsiEI	CGRYCG	1 cut(s)	460
BsiSI	CCGG	2 cut(s)	223, 456
BslI	CCNNNNNNNGG	1 cut(s)	198
BsnI	GGCC	1 cut(s)	154
Bsp143I	GATC	3 cut(s)	55, 225, 280
BspACI	CCGC	1 cut(s)	419
BspANI	GGCC	1 cut(s)	154
BspCNI	CTCAG	2 cut(s)	86, 372
BspFNI	CGCG	1 cut(s)	465
BspLI	GGNNCC	3 cut(s)	205, 227, 454
BspPI	GGATC	3 cut(s)	220, 233, 275
BsrDI	GCAATG	1 cut(s)	298
BssECI	CCNNGG	1 cut(s)	155
BssMI	GATC	3 cut(s)	55, 225, 280
BssT1I	CCWWGG	1 cut(s)	155
BstDEI	CTNAG	2 cut(s)	73, 359
BstF5I	GGATG	1 cut(s)	66
BstFNI	CGCG	1 cut(s)	465
BstH2I	RGCGCY	1 cut(s)	174
BstHHI	GCGC	3 cut(s)	173, 190, 465
BstKTI	GATC	3 cut(s)	58, 228, 283
BstMBI	GATC	3 cut(s)	55, 225, 280
BstMCI	CGRYCG	1 cut(s)	460
BstMWI	GCNNNNNNNGC	1 cut(s)	428
BstSFI	CTRYAG	1 cut(s)	121
BstUI	CGCG	1 cut(s)	465
BstV1I	GCAGC	2 cut(s)	172, 269
BstX2I	RGATCY	2 cut(s)	225, 280
BstYI	RGATCY	2 cut(s)	225, 280
BsuRI	GGCC	1 cut(s)	154
BtgZI	GCGATG	1 cut(s)	407
BtsCI	GGATG	1 cut(s)	66
CfoI	GCGC	3 cut(s)	173, 190, 465
CseI	GACGC	1 cut(s)	437
CviAII	CATG	2 cut(s)	290, 409
CviJI	RGCY	7 cut(s)	41, 77, 85, 144, 154, 206, 244
CviKI_1	RGCY	7 cut(s)	41, 77, 85, 144, 154, 206, 244
DdeI	CTNAG	2 cut(s)	73, 359
DpnI	GATC	3 cut(s)	57, 227, 282
DpnII	GATC	3 cut(s)	55, 225, 280
DraI	TTTAAA	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	155
Eco147I	AGGCCT	1 cut(s)	154
Eco47III	AGCGCT	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	155
ErhI	CCWWGG	1 cut(s)	155
FaeI	CATG	2 cut(s)	293, 412
FaiI	YATR	7 cut(s)	15, 231, 291, 320, 322, 350, 410
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FatI	CATG	2 cut(s)	289, 408
Fnu4HI	GCNGC	3 cut(s)	186, 258, 420
FokI	GGATG	1 cut(s)	73
Fsp4HI	GCNGC	3 cut(s)	186, 258, 420
GlaI	GCGC	3 cut(s)	172, 189, 464
GluI	GCNGC	3 cut(s)	186, 258, 420
HaeII	RGCGCY	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	154
HapII	CCGG	2 cut(s)	223, 456
HgaI	GACGC	1 cut(s)	437
HhaI	GCGC	3 cut(s)	173, 190, 465
Hin1II	CATG	2 cut(s)	293, 412
Hin6I	GCGC	3 cut(s)	171, 188, 463
HinP1I	GCGC	3 cut(s)	171, 188, 463
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HindIII	AAGCTT	2 cut(s)	39, 242
HinfI	GANTC	1 cut(s)	265
HpaII	CCGG	2 cut(s)	223, 456
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	3 cut(s)	106, 313, 361
Hpy8I	GTNNAC	1 cut(s)	427
HpyAV	CCTTC	1 cut(s)	373
HpyCH4V	TGCA	3 cut(s)	8, 257, 303
HpyF10VI	GCNNNNNNNGC	1 cut(s)	428
HpyF3I	CTNAG	2 cut(s)	73, 359
Hsp92II	CATG	2 cut(s)	293, 412
HspAI	GCGC	3 cut(s)	171, 188, 463
Kzo9I	GATC	3 cut(s)	55, 225, 280
LmnI	GCTCC	2 cut(s)	178, 203
LpnPI	CCDG	8 cut(s)	99, 130, 133, 195, 236, 259, 346, 384
Lsp1109I	GCAGC	2 cut(s)	172, 269
MalI	GATC	3 cut(s)	57, 227, 282
MboI	GATC	3 cut(s)	55, 225, 280
MboII	GAAGA	1 cut(s)	274
MflI	RGATCY	2 cut(s)	225, 280
MluCI	AATT	5 cut(s)	127, 161, 337, 364, 444
MnlI	CCTC	3 cut(s)	26, 244, 286
MseI	TTAA	4 cut(s)	21, 44, 386, 441
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	2 cut(s)	223, 456
MvnI	CGCG	1 cut(s)	465
MwoI	GCNNNNNNNGC	1 cut(s)	428
NdeII	GATC	3 cut(s)	55, 225, 280
NlaIII	CATG	2 cut(s)	293, 412
NlaIV	GGNNCC	3 cut(s)	205, 227, 454
PceI	AGGCCT	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	265
PflMI	CCANNNNNTGG	1 cut(s)	198
PkrI	GCNGC	3 cut(s)	187, 259, 421
PspN4I	GGNNCC	3 cut(s)	205, 227, 454
PsuI	RGATCY	2 cut(s)	225, 280
PvuII	CAGCTG	1 cut(s)	77
SaqAI	TTAA	4 cut(s)	21, 44, 386, 441
SatI	GCNGC	3 cut(s)	186, 258, 420
Sau3AI	GATC	3 cut(s)	55, 225, 280
SetI	ASST	6 cut(s)	13, 43, 79, 146, 246, 255
SfcI	CTRYAG	1 cut(s)	121
Sse9I	AATT	5 cut(s)	127, 161, 337, 364, 444
SseBI	AGGCCT	1 cut(s)	154
SsiI	CCGC	1 cut(s)	419
StuI	AGGCCT	1 cut(s)	154
StyI	CCWWGG	1 cut(s)	155
TaqI	TCGA	1 cut(s)	314
TasI	AATT	5 cut(s)	127, 161, 337, 364, 444
TauI	GCSGC	1 cut(s)	422
TfiI	GAWTC	1 cut(s)	265
Tru1I	TTAA	4 cut(s)	21, 44, 386, 441
Tru9I	TTAA	4 cut(s)	21, 44, 386, 441
TseI	GCWGC	2 cut(s)	185, 257
Van91I	CCANNNNNTGG	1 cut(s)	198
XapI	RAATTY	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.