pycom10g02850

ATP synthase B/B' CF(0)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
3197446 .. 3198054
609 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 516 bp
ATGTCAGACATCCGTCAGTTTTTCTTAAATATTAAAAAATTAAAAATAAATTTATTTTTTTATATAAAATTGTGGATCGATCCACCCTCACTCTCTCATTTCTCTCTCTATTCTCTCTCTAGGCACCTGCATCCCCAAAATTCCAAAACCCAGAAACCCTTCCCCCCCCTCCCCCCCCCCCCCCAACCTTCCTCCACCACCCTCTTTCTCTCCTCTCTCTCTCACACTCTTTCTTCTCTCTCTCTTTCTCTCTGGGCAACCTGCATCCCCAAAATCCCAAAACCCAGAATCCCATTACAAATCTCAAAACCAAAAATCCCATCAAACCTCCCAAAGCTCACAAAGCCCCAATTGGTATCCCTCTCCTTCTCTCTCTTCGCCATCGCCGCCGCCTCCCTGGCCTTAGTGCCACCGTCGTTGGCGGAGGAGTTCGAGAAGGTGGCCCTACTCGACTTCGACATCATCCTTTCTATCCAAATGGTGCAGGGATTAGAGAAAGAGGGGGAGTGTCTTTGA

Protein Analysis

172

Amino Acids

19.13

Weight (kDa)

9.58

Isoelectric Point (pI)

45.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80060 AT1G80060 AT1G80060 AT1G80060 AT1G80060
pyrus_communis pycom10g02850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 135
Acc36I ACCTGC 2 cut(s) 135, 269
AccB1I GGYRCC 1 cut(s) 123
AciI CCGC 3 cut(s) 387, 390, 422
AclWI GGATC 2 cut(s) 74, 83
AcsI RAATTY 2 cut(s) 49, 139
AjnI CCWGG 1 cut(s) 396
AluBI AGCT 1 cut(s) 337
AluI AGCT 1 cut(s) 337
AlwI GGATC 2 cut(s) 74, 83
AoxI GGCC 2 cut(s) 399, 441
ApoI RAATTY 2 cut(s) 49, 139
Asp700I GAANNNNTTC 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 442
BanI GGYRCC 1 cut(s) 123
BccI CCATC 2 cut(s) 328, 389
BciT130I CCWGG 1 cut(s) 398
BciVI GTATCC 1 cut(s) 367
BfaI CTAG 1 cut(s) 120
BfuAI ACCTGC 2 cut(s) 135, 269
BfuI GTATCC 1 cut(s) 367
BglI GCCNNNNNGGC 1 cut(s) 398
BisI GCNGC 2 cut(s) 387, 390
BlsI GCNGC 2 cut(s) 388, 391
Bme1390I CCNGG 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 442
BmiI GGNNCC 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 398
BmsI GCATC 2 cut(s) 139, 273
BoxI GACNNNNGTC 1 cut(s) 12
Bsa29I ATCGAT 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 396
BseBI CCWGG 1 cut(s) 398
BseCI ATCGAT 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 396
BseGI GGATG 4 cut(s) 9, 130, 264, 462
BseRI GAGGAG 2 cut(s) 202, 440
BsgI GTGCAG 1 cut(s) 503
BshFI GGCC 2 cut(s) 401, 443
BshNI GGYRCC 1 cut(s) 123
BshVI ATCGAT 1 cut(s) 78
BsnI GGCC 2 cut(s) 401, 443
Bsp143I GATC 2 cut(s) 75, 79
BspACI CCGC 3 cut(s) 387, 390, 422
BspANI GGCC 2 cut(s) 401, 443
BspDI ATCGAT 1 cut(s) 78
BspLI GGNNCC 1 cut(s) 125
BspMI ACCTGC 2 cut(s) 135, 269
BspPI GGATC 2 cut(s) 74, 83
BspT107I GGYRCC 1 cut(s) 123
BssECI CCNNGG 1 cut(s) 396
BssMI GATC 2 cut(s) 75, 79
Bst2UI CCWGG 1 cut(s) 398
Bst4CI ACNGT 1 cut(s) 414
Bst6I CTCTTC 1 cut(s) 380
BstDEI CTNAG 1 cut(s) 403
BstF5I GGATG 4 cut(s) 9, 130, 264, 462
BstKTI GATC 2 cut(s) 78, 82
BstMBI GATC 2 cut(s) 75, 79
BstMWI GCNNNNNNNGC 3 cut(s) 343, 386, 398
BstNI CCWGG 1 cut(s) 398
BstPAI GACNNNNGTC 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 396
Bsu15I ATCGAT 1 cut(s) 78
BsuI GTATCC 1 cut(s) 367
BsuRI GGCC 2 cut(s) 401, 443
BsuTUI ATCGAT 1 cut(s) 78
BtgZI GCGATG 1 cut(s) 367
BtsCI GGATG 4 cut(s) 9, 130, 264, 462
BveI ACCTGC 2 cut(s) 135, 269
Cfr13I GGNCC 1 cut(s) 442
ClaI ATCGAT 1 cut(s) 78
CspCI CAANNNNNGTGG 2 cut(s) 399, 434
CviJI RGCY 4 cut(s) 337, 346, 401, 443
CviKI_1 RGCY 4 cut(s) 337, 346, 401, 443
DdeI CTNAG 1 cut(s) 403
DpnI GATC 2 cut(s) 77, 81
DpnII GATC 2 cut(s) 75, 79
Eam1104I CTCTTC 1 cut(s) 380
EarI CTCTTC 1 cut(s) 380
EciI GGCGGA 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 396
FaiI YATR 2 cut(s) 63, 65
Fnu4HI GCNGC 2 cut(s) 387, 390
FokI GGATG 3 cut(s) 117, 251, 449
Fsp4HI GCNGC 2 cut(s) 387, 390
FspBI CTAG 1 cut(s) 120
GluI GCNGC 2 cut(s) 387, 390
HaeIII GGCC 2 cut(s) 401, 443
HinfI GANTC 1 cut(s) 288
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 433
Hpy99I CGWCG 1 cut(s) 418
HpyAV CCTTC 4 cut(s) 169, 198, 376, 430
HpyCH4III ACNGT 1 cut(s) 414
HpyCH4V TGCA 3 cut(s) 130, 264, 484
HpyF10VI GCNNNNNNNGC 3 cut(s) 343, 386, 398
HpyF3I CTNAG 1 cut(s) 403
Kzo9I GATC 2 cut(s) 75, 79
LpnPI CCDG 8 cut(s) 140, 164, 238, 274, 298, 383, 410, 470
LweI GCATC 2 cut(s) 139, 273
MaeI CTAG 1 cut(s) 120
MalI GATC 2 cut(s) 77, 81
MboI GATC 2 cut(s) 75, 79
MboII GAAGA 2 cut(s) 225, 367
MfeI CAATTG 1 cut(s) 350
MluCI AATT 5 cut(s) 38, 49, 68, 139, 350
MroXI GAANNNNTTC 1 cut(s) 158
MseI TTAA 3 cut(s) 26, 33, 41
MspR9I CCNGG 1 cut(s) 398
MunI CAATTG 1 cut(s) 350
MvaI CCWGG 1 cut(s) 398
MwoI GCNNNNNNNGC 3 cut(s) 343, 386, 398
NdeII GATC 2 cut(s) 75, 79
NlaIV GGNNCC 1 cut(s) 125
PaqCI CACCTGC 1 cut(s) 135
PdmI GAANNNNTTC 1 cut(s) 158
PfeI GAWTC 1 cut(s) 288
PkrI GCNGC 2 cut(s) 388, 391
PshAI GACNNNNGTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 396
PspGI CCWGG 1 cut(s) 396
PspN4I GGNNCC 1 cut(s) 125
PspPI GGNCC 1 cut(s) 442
SaqAI TTAA 3 cut(s) 26, 33, 41
SatI GCNGC 2 cut(s) 387, 390
Sau3AI GATC 2 cut(s) 75, 79
Sau96I GGNCC 1 cut(s) 442
ScrFI CCNGG 1 cut(s) 398
SetI ASST 6 cut(s) 129, 190, 263, 330, 339, 441
SfaNI GCATC 2 cut(s) 139, 273
Sse9I AATT 5 cut(s) 38, 49, 68, 139, 350
SsiI CCGC 3 cut(s) 387, 390, 422
SspI AATATT 1 cut(s) 31
SspMI CTAG 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 396
TaaI ACNGT 1 cut(s) 414
TaqI TCGA 4 cut(s) 78, 432, 450, 456
TasI AATT 5 cut(s) 38, 49, 68, 139, 350
TauI GCSGC 2 cut(s) 389, 392
TfiI GAWTC 1 cut(s) 288
Tru1I TTAA 3 cut(s) 26, 33, 41
Tru9I TTAA 3 cut(s) 26, 33, 41
XapI RAATTY 2 cut(s) 49, 139
XmnI GAANNNNTTC 1 cut(s) 158
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.